Running your pipeline on my data

[fi1d18]

Hi

I am too new with bioinformatics; I need your help please

I have whole exome sequencing on tumour only samples. I have created sorted bam files. Now, I want to call somatic mutations where I found you page; Having a lot of bash scripts here, could you please help me to figure out how to run your scripts on my bam files?

Thank you in advance