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Currently, when using mne-bids-pipeline with interactive=True, there are several key plots that would be valuable to include for more comprehensive data inspection and quality control. I propose the following enhancements:
Add raw.plot() before preprocessing/_01_data_quality:
Allow for checking and marking bad channels early in the pipeline.
Include ica.plot_components(), ica.plot_sources(), and ica.plot_scores() after preprocessing/_06a2_find_ica_artifacts:
Enable review and modification of automatic ICA selection if necessary.
Add epochs.plot() after preprocessing/_09_ptp_reject:
Facilitate visualization and manual rejection of epochs.
Additionally, it would be beneficial to allow users to specify which plots they want to see in interactive mode. For example:
interactive = ['raw', 'ica', 'epochs']
This customization would give users more control over the interactive process while maintaining efficiency for those who don't need all plots.
The text was updated successfully, but these errors were encountered:
Personally I don't use the diagnostic plots and just inspect reports so I don't have a lot of first-hand insight here. But what you suggest adding seems to make sense, both in terms of additional plots and in terms of how to subselect different interactive sections/levels! So I would say yes if you're up for implementing these a PR would be great.
Currently, when using
mne-bids-pipeline
withinteractive=True
, there are several key plots that would be valuable to include for more comprehensive data inspection and quality control. I propose the following enhancements:raw.plot()
beforepreprocessing/_01_data_quality
:ica.plot_components()
,ica.plot_sources()
, andica.plot_scores()
afterpreprocessing/_06a2_find_ica_artifacts
:epochs.plot()
afterpreprocessing/_09_ptp_reject
:Additionally, it would be beneficial to allow users to specify which plots they want to see in interactive mode. For example:
This customization would give users more control over the interactive process while maintaining efficiency for those who don't need all plots.
The text was updated successfully, but these errors were encountered: