linux_conda.yml

name: 'linux / conda'
concurrency:
  group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }}
  cancel-in-progress: true
on:
  push:
    branches:
      - '*'
  pull_request:
    branches:
      - '*'

jobs:
  # Linux
  job:
    timeout-minutes: 90
    name: 'py3.9'
    runs-on: ubuntu-20.04
    defaults:
      run:
        shell: bash -el {0}
    env:
      CONDA_ENV: 'environment.yml'
      DISPLAY: ':99.0'
      MNE_LOGGING_LEVEL: 'warning'
      MKL_NUM_THREADS: '1'
      PYTHONUNBUFFERED: '1'
      PYTHON_VERSION: '3.9'
    steps:
      - uses: actions/checkout@v4
      - uses: pyvista/setup-headless-display-action@main
        with:
          qt: true
          pyvista: false
      - uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: ${{ env.CONDA_ENV }}
          create-args: >- # beware the >- instead of |, we don't split on newlines but on spaces
            python=${{ env.PYTHON_VERSION }}
      - run: |
          curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/get_minimal_commands.sh -o get_minimal_commands.sh
          chmod +x get_minimal_commands.sh
          source ./get_minimal_commands.sh
          pip install .[test]
        name: 'Install dependencies'
      - run: pip install git+https://github.com/mne-tools/mne-python@main
      - run: pip install -e .
      - run: |
          which mne
          mne sys_info -pd
          python -c "import numpy; numpy.show_config()"
        name: 'Show infos'
      - name: Run pytest
        run: python -m pytest . --cov=mne_connectivity --cov-report=xml --cov-config=pyproject.toml --verbose --ignore mne-python
      - uses: codecov/codecov-action@v3