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output_nih_20101104_edit.csv
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output_nih_20101104_edit.csv
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Submission ID Description Project Lab Assay Data Type Experimental Factor Treatment Organism Cell Line Strain Tissue Stage/Treatment Date Data Submitted Release Date Status GFF Files GEO/SRA IDs
21 E0-12_BEAF 32 ChIP-chip White White ChIP-chip chromatin Target=BEAF-32;AbName=BEAF-32;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 8/15/08 1/26/09 released BEAF-32_1fdr.gff GSM409067
22 E0-12_CP190 ChIP-chip White White ChIP-chip chromatin Target=Cp190;AbName=CP190-VC;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 8/15/08 8/15/08 released CP190_1fdr.gff GSM409068
23 Embryo 0-12h GAF ChIP-chip White White ChIP-chip chromatin Target=Trl;AbName=GAF;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 8/15/08 1/26/09 released GAF_1fdr.gff GSM409071
24 Embryo 0-12h Mod(mdg4) ChIP-chip White White ChIP-chip chromatin Target=mod(mdg4);AbName=mod(mdg4);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 8/15/08 1/26/09 released Mod(mdg4)_1fdr.gff GSM409072
27 Embryo 0-12h SuHw ChIP-chip White White ChIP-chip chromatin Target=su(Hw);AbName=Su(Hw);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 8/15/08 1/26/09 released SuHw_1fdr.gff GSM409073
34 5' RACE (mixed-stage embryos) Celniker Celniker RACE gene model Reactions=686 Drosophila melanogaster y; cn bw sp early embryonic cell, blastoderm cell, gastrula cell embryo: cleavage stage, extended germ band stage, gastrula stage, pre-blastoderm stage 3/26/08 2/3/09 released 2008-03-26.1.gff
35 superseded by 2675 DMG1 gene models Celniker Brent Computational annotation gene model Drosophila melanogaster 3/27/08 3/4/09 replaced transcript_clusters/dm2_run1.gff3, models/DMG1.gff3
36 superseded by 2675 DMG2 gene models Celniker Brent Computational annotation gene model Drosophila arizonae, Drosophila sp., Drosophila simulans, Drosophila melanogaster 4/23/08 3/4/09 replaced transcript_clusters/dm3_run2.gff3, models/DMG2.gff3
37 superseded by 2675 DMG4 gene models Celniker Brent Computational annotation gene model Drosophila simulans, Drosophila arizonae, Drosophila sp., Drosophila melanogaster 6/26/08 3/5/09 replaced transcript_clusters/dm3_run4.gff3, models/DMG4.gff3
40 Dm_1182-4H_TotalRNA_p200_038-040-042_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster 1182-4H 3/26/08 1/27/09 released 1182-4H.bed.gff3 GSE16269, GSM409470, GSM409471, GSM409472
43 HTZ-1_N2_Mixed_Embryos (BK00001_HTZ1_N2_MXEMB) Lieb Lieb ChIP-chip chromatin Target=htz-1;AbName=HTZ-1;Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 9/10/08 2/11/10 released computed_peaks/HTZIP_chipotle_peaks_WS180.gff3 GSM257465
44 POL-2_N2_Mixed_Embryos (CVMMS126R_8WG16_N2_MXEMB) Lieb Lieb ChIP-chip chromatin Target=ama-1;AbName=8WG16;Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 9/10/08 2/17/10 released GSM257637
48 Dm_CME-L1_TotalRNA_p200_086-088-090_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME L1 3/26/08 1/27/09 released CME-L1.bed.gff3 GSE16270, GSM409473, GSM409474, GSM409475
49 Dm_CME-W1-Cl.8p_TotalRNA_p200_060-062-064_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 3/26/08 1/27/09 released CME-W1-Cl.8+.bed.gff3 GSE16271, GSM409476, GSM409477, GSM409478
50 Dm_GM2_TotalRNA_p200_008-010-012_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster GM2 3/26/08 1/27/09 released GM2.bed.gff3 GSE16272, GSM409479, GSM409479, GSM409480, GSM409481
51 Dm_Kc167_TotalRNA_p200_002-004-006_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 3/26/08 1/27/09 released Kc167.bed.gff3 GSE16273, GSM409482, GSM409483, GSM409484
52 Dm_ML-DmBG1-c2_TotalRNA_p200_116-118-120_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG1-c1 3/26/08 1/27/09 released ML-DmBG1-c1.bed.gff3 GSE16274, GSM409485, GSM409486, GSM409487
53 Dm_ML-DmBG3-c2_TotalRNA_p200_122-124-126_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 3/26/08 1/27/09 released ML-DmBG3-c2.bed.gff3 GSE16275, GSM409488, GSM409489, GSM409490
54 Dm_ML-DmD11_TotalRNA_p200_170-172-174_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD11 3/26/08 1/27/09 released ML-DmD11.bed.gff3 GSE16276, GSM409491, GSM409492, GSM409493
55 Dm_DmD17-c3_TotalRNA_p200_194-196-198_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD17-c3 3/26/08 1/27/09 released ML-DmD17-c3.bed.gff3 GSE16277, GSM409494, GSM409495, GSM409496
56 Dm_DmD20-c2_TotalRNA_p200_182-184-186_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD20-c2 3/26/08 1/27/09 released ML-DmD20-c2.bed.gff3 GSE16278, GSM409497, GSM409498, GSM409499
57 Dm_DmD20-c5_TotalRNA_p200_188-190-192_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD20-c5 3/26/08 1/27/09 released ML-DmD20-c5.bed.gff3 GSE16279, GSM409500, GSM409501, GSM409502
58 Dm_DmD21_TotalRNA_p200_050-052-054_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD21 3/26/08 1/27/09 released ML-DmD21.bed.gff3 GSE16280, GSM409503, GSM409504, GSM409505
59 Dm_DmD32_TotalRNA_p200_164-166-168_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD32 3/26/08 1/27/09 released ML-DmD32.bed.gff3 GSE16281, GSM409506, GSM409507, GSM409508
60 Dm_DmD4-c1_TotalRNA_p200_140-142-144_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD4-c1 3/26/08 1/27/09 released ML-DmD4-c1.bed.gff3 GSE16282, GSM409509, GSM409510, GSM409511
61 Dm_DmD8_TotalRNA_p200_206-208-210_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD8 3/26/08 1/27/09 released ML-DmD8.bed.gff3 GSE16283, GSM409512, GSM409513, GSM409514
62 Dm_DmD9_TotalRNA_p200_072-074-076_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD9 3/26/08 1/27/09 released ML-DmD9.bed.gff3 GSE16284, GSM409515, GSM409516, GSM409517
63 Dm_S1_TotalRNA_p200_026-028-030_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S1 3/26/08 1/27/09 released S1.bed.gff3 GSE16285, GSM409518, GSM409519, GSM409520
64 Dm_S2-DRSC_TotalRNA_p200_014-016-018_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 3/26/08 1/27/09 released S2-DRSC.bed.gff3 GSE16286, GSM409521, GSM409522, GSM409523
65 Dm_S2Rp_TotalRNA_p200_020-022-024_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2R+ 3/26/08 1/27/09 released S2R+.bed.gff3 GSE16287, GSM409524, GSM409525, GSM409526
66 Dm_S3_TotalRNA_p200_104-106-108_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S3 3/26/08 1/27/09 released S3.bed.gff3 GSE16288, GSM409527, GSM409528, GSM409529
67 Dm_Sg4_TotalRNA_p200_200-202-204_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Sg4 3/26/08 1/27/09 released Sg4.bed.gff3 GSE16289, GSM409530, GSM409531, GSM409532
69 Dm_DmD16-c3_TotalRNA_p200_138-136-138_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmD16-c3 3/26/08 1/27/09 released ML-DmD16-c3.bed.gff3 GSE16290, GSM409533, GSM409534, GSM409535
74 deprecated by 737 Lai_GSM240749 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S adult head adult: adult stage 9/17/09 6/13/08 replaced
75 deprecated by 738 Lai_GSM272653 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Kc167 9/17/09 6/13/08 replaced
76 deprecated by 739 Lai_GSM286602 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S abdomen, thorax adult: adult stage 9/17/09 3/31/09 replaced
77 deprecated by 740 Lai_GSM286605 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 9/17/09 6/12/09 replaced
78 deprecated by 517 Lai_GSM286611 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 11-13 9/17/09 4/8/09 replaced
79 deprecated by 741 Lai_GSM272651 Lai Lai RNA-seq RNA profiling Drosophila melanogaster mixed: S2-DRSC, Kc167 9/17/09 2/15/10 replaced
80 deprecated by 742 Lai_GSM275691 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S imaginal disc adult: adult stage 9/17/09 12/23/09 replaced
81 deprecated by 743 Lai_GSM286603 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism adult: adult stage 9/17/09 3/2/09 replaced
82 deprecated by 752 Lai_GSM286606 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 9/17/09 4/3/09 replaced
83 deprecated by 745 Lai_GSM286613 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 9/17/09 10/15/10 replaced
84 deprecated by 746 Lai_GSM272652 Lai Lai RNA-seq RNA profiling Drosophila melanogaster S2-DRSC 9/17/09 3/9/09 replaced
85 deprecated by 747 Lai_GSM286601 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S adult head adult: adult stage 9/17/09 6/16/09 replaced
87 deprecated by 518 Lai_GSM286607 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 11-13 9/17/09 4/3/09 replaced
90 DPY-27_N2_Mixed_Embryos (JL00001_DPY27_N2_MXEMB) Lieb Lieb ChIP-chip chromatin Target=dpy-27;AbName=DPY-27;Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 9/21/08 12/4/09 released computed_peaks/DPY27_peaks.gff GSM147959
91 deprecated by 519 Lai_GSM286604 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 9/17/09 4/6/09 replaced
92 deprecated by 763 Dm_y[1]cn[1] bw[1] sp[1]_embryo_6-8h_TotalRNA_p200_230-232_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: extended germ band stage, late extended germ band stage, embryonic stage 11-12 9/17/09 3/2/09 replaced
93 Dm_y[1]cn[1] bw[1] sp[1]_larval_L1_TotalRNA_p200_284-286-288_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage, larval stage 9/23/08 1/28/09 released Dro2_AS_Dm_L1_larvae_729.gff GSE16292, GSM409538, GSM409539, GSM409540
94 Dm_y[1]cn[1] bw[1] sp[1]_larval_L2_TotalRNA_p200_290-292-294_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism larva: larval stage, second instar larval stage 9/23/08 1/27/09 released Dro2_AS_Dm_L2_larvae_659.gff GSE16293, GSM409541, GSM409542, GSM409543
95 Dm_y[1]cn[1] bw[1] sp[1]_prepupa_WhitePrePupae_TotalRNA_p200_326-328-330_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism larva: prepupal stage, prepupal stage P1 9/23/08 1/27/09 released Dro2_AS_Dm_WPP_RW_788.gff GSE16294, GSM409544, GSM409545, GSM409546
96 Dm_y[1]cn[1] bw[1] sp[1]_adult_Female_1dayPostEclosion_TotalRNA_p200_374-376-378_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/23/08 1/27/09 released Dro2_AS_DroAdF-Ecl+1day_754.gff GSE16295, GSM409547, GSM409548, GSM409549
97 Dm_y[1]cn[1] bw[1] sp[1]_adult_Female_5dayPostEclosion_TotalRNA_p200_386-388-390_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/23/08 1/27/09 released Dro2_AS_DroAdF-Ecl+5day_755.gff GSE16296, GSM409550, GSM409551, GSM409552
98 Dm_y[1]cn[1] bw[1] sp[1]_adult_Male_1dayPostEclosion_TotalRNA_p200_368-370-372_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/23/08 1/28/09 released Dro2_AS_DroAdM-Ecl+1day_730.gff GSE16297, GSM409553, GSM409554, GSM409555
99 Dm_y[1]cn[1] bw[1] sp[1]_adult_Male_5dayPostEclosion_TotalRNA_p200_380-382-384_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/23/08 1/28/09 released Dro2_AS_DroAdM-Ecl+5day_756.gff GSE16298, GSM409556, GSM409557, GSM409558
100 Dm_y[1]cn[1] bw[1] sp[1]_larval_L3_gut_stage1_TotalRNA_p200_440-442-444_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism larva: larval stage, third instar larval stage 9/23/08 1/28/09 released Dro2_AS_L3-larvae-dark-blue_RW_789.gff GSE16299, GSM409559, GSM409560, GSM409561
101 Dm_y[1]cn[1] bw[1] sp[1]_embryo_0-2h_TotalRNA_p200_212-214-216_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, pre-blastoderm stage, embryonic stage 1-2 9/23/08 1/28/09 released Dro2_AS_Dm_emb_2h_578.gff GSE16300, GSM409562, GSM409563, GSM409564
102 Dm_y[1]cn[1] bw[1] sp[1]_embryo_0-2h_poly-Ap_p200_403-404-405_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, pre-blastoderm stage, embryonic stage 1-2 9/23/08 1/28/09 released Dro2_AS_Dm_emb_2h_RWP+_579.gff GSE16301, GSM409565, GSM409566, GSM409567
103 Dm_y[1]cn[1] bw[1] sp[1]_embryo_8-10h_TotalRNA_p200_236-238-240_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: late extended germ band stage, embryonic stage 12-13 9/23/08 1/29/09 released Dro2_AS_Dm_emb_10h_724.gff GSE16302, GSM409568, GSM409569, GSM409570
104 Dm_y[1]cn[1] bw[1] sp[1]_embryo_8-10h_poly-Ap_p200_415-416-417_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: late extended germ band stage, embryonic stage 12-13 9/23/08 1/29/09 released Dro2_AS_Dm_emb_10h_RW+_725.gff GSE16303, GSM409571, GSM409572, GSM409573
105 Dm_y[1]cn[1] bw[1] sp[1]_embryo_10-12h_TotalRNA_p200_242-244-246_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 13-15 9/23/08 1/28/09 released Dro2_AS_Dm_emb_12h_726.gff GSE16304, GSM409574, GSM409575, GSM409576
106 Dm_y[1]cn[1] bw[1] sp[1]_embryo_10-12h_poly-Ap_p200_418-419-420_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 13-15 9/23/08 1/27/09 released Dro2_AS_Dm_emb_12h_RW+_727.gff GSE16305, GSM409577, GSM409578, GSM409579
107 Dm_y[1]cn[1] bw[1] sp[1]_embryo_12-14h_TotalRNA_p200_248-250-252_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: dorsal closure stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 15-16 9/23/08 1/27/09 released Dro2_AS_Dm_emb_14h_722.gff GSE16306, GSM409580, GSM409581, GSM409582
108 Dm_y[1]cn[1] bw[1] sp[1]_embryo_12-14h_poly-Ap_p200_421-422-423_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: dorsal closure stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 15-16 9/23/08 9/23/08 released Dro2_AS_Dm_emb_14h_RW+_684.gff GSE16307, GSM409583, GSM409584, GSM409585
109 Dm_y[1]cn[1] bw[1] sp[1]_embryo_14-16h_TotalRNA_p200_254-256-258_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 16 9/23/08 1/29/09 released Dro2_AS_Dm_emb_16h_654.gff GSE16308, GSM409586, GSM409587, GSM409588
110 Dm_y[1]cn[1] bw[1] sp[1]_embryo_14-16h_poly-Ap_p200_424-425_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 16 9/23/08 3/2/09 released Dro2_AS_Dm_emb_16h_RW+_787.gff GSE16309, GSM409589, GSM409590
111 Dm_y[1]cn[1] bw[1] sp[1]_embryo_16-18h_TotalRNA_p200_260-262-264_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 17 9/23/08 1/31/09 released Dro2_AS_Dm_emb_18h_685.gff GSE16310, GSM409591, GSM409592, GSM409593
112 Dm_y[1]cn[1] bw[1] sp[1]_embryo_16-18h_poly-Ap_p200_427-428-429_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 17 9/23/08 1/29/09 released Dro2_AS_Dm_emb_18h_RW+_723.gff GSE16311, GSM409594, GSM409595, GSM409596
113 Dm_y[1]cn[1] bw[1] sp[1]_embryo_18-20h_TotalRNA_p200_266-268-270_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, late embryonic stage, embryonic stage 17 9/23/08 1/29/09 released Dro2_AS_Dm_emb_20h_686.gff GSE16312, GSM409597, GSM409598, GSM409599
114 Dm_y[1]cn[1] bw[1] sp[1]_embryo_18-20h_poly-Ap_p200_431-432_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, late embryonic stage, embryonic stage 17 9/23/08 3/2/09 released Dro2_AS_Dm_emb_20h_686.gff GSE16313, GSM409600, GSM409601
115 Dm_y[1]cn[1] bw[1] sp[1]_embryo_20-22h_poly-Ap_p200_433-434-435_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, embryonic stage 17 9/23/08 1/31/09 released Dro2_AS_Dm_emb_22h_RW+_689.gff GSE16314, GSM409602, GSM409603, GSM409604
116 Dm_y[1]cn[1] bw[1] sp[1]_embryo_20-22h_TotalRNA_p200_274-276_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, embryonic stage 17 9/23/08 3/2/09 released Dro2_AS_Dm_emb_22h_RW_728.gff GSE16315, GSM409605, GSM409606
117 Dm_y[1]cn[1] bw[1] sp[1]_embryo_22-24h_TotalRNA_p200_278-280-282_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, late embryonic stage, embryonic stage 17 9/23/08 1/29/09 released Dro2_AS_Dm_emb_24h_658.gff GSE16316, GSM409607, GSM409608, GSM409609
118 Dm_y[1]cn[1] bw[1] sp[1]_embryo_2-4h_TotalRNA_p200_218-220-222_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 9/23/08 1/31/09 released Dro2_AS_Dm_emb_4h_649.gff GSE16317, GSM409610, GSM409611, GSM409612
119 Dm_y[1]cn[1] bw[1] sp[1]_embryo_2-4h_poly-Ap_p200_406-407-408_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 9/23/08 1/29/09 released Dro2_AS_Dm_emb_4h_RWP+_650.gff GSE16318, GSM409613, GSM409614, GSM409615
120 Dm_y[1]cn[1] bw[1] sp[1]_embryo_4-6h_TotalRNA_p200_224-226-228_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 9/23/08 1/29/09 released Dro2_AS_Dm_emb_6h_651.gff GSE16319, GSM409616, GSM409617, GSM409618
121 Dm_y[1]cn[1] bw[1] sp[1]_embryo_4-6h_poly-Ap_p200_409-410-411_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 9/23/08 1/29/09 released Dro2_AS_Dm_emb_6h_RWP+_652.gff GSE23219, GSM571093, GSM571093, GSM571094, GSM571095
122 Dm_y[1]cn[1] bw[1] sp[1]_embryo_6-8h_poly-Ap_p200_412-413-414_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: extended germ band stage, late extended germ band stage, embryonic stage 11-12 9/23/08 1/29/09 released Dro2_AS_Dm_emb_8h_RWP+_653.gff GSE16320, GSM409619, GSM409620, GSM409621
127 SDC-3_N2_Mixed_Embryos_(JL00002_SDC3_N2_MXEMB) Lieb Lieb ChIP-chip chromatin Target=sdc-3;AbName=SDC-3;Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 9/30/08 12/4/09 released computed_peaks/SDC3_chrX_peaks.gff GSM147967
139 Dm_mbn2_TotalRNA_p200_044-046-048_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster mbn2 10/10/08 1/27/09 released Dro2_AS_mbn2_791.gff GSE16321, GSM409622, GSM409623, GSM409624
140 Dm_CME_W2_TotalRNA_p200_460-462-464_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W2 10/10/08 1/27/09 released Dro2_AS_CME-W2_786.gff GSE16322, GSM409625, GSM409626, GSM409627
146 superseded by 2675 MB5 Celniker Brent Computational annotation gene model Drosophila sp., Drosophila melanogaster 9/1/08 3/17/09 replaced transcript_clusters/dm3_run8.gff3, models/MB05.gff3
174 POL-2_CTD_Mixed_Embryos (ABAB5408_4H8_N2_MXEMB) Lieb Desai ChIP-chip chromatin Target=ama-1;AbName=ab5408;Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 6/2/08 2/15/10 released computed_peaks/ABAB5408_4H8_N2_MXEMB_peaks.gff , GSE22669, GSM562194, GSM562195, GSM562196, GSM562197, GSM562198, GSM562199
175 Histone_H3K36me3_from_N2_L3_larvae_(AB9050_H3K36ME3_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 1/4/09 2/16/10 released GSE22670, GSM562200, GSM562201, GSM562202
176 Histone_H3K4me3_from_N2_L3_larvae_(AR0169_H3K4me3_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 1/4/09 2/16/10 released GSE22697, GSM562582, GSM562583, GSM562584
179 Negative_control_antibody_from_N2_L3_larvae_(JA00002_IGG_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=none;AbName=JA00002_IGG;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 1/4/09 2/17/10 released GSE22698, GSM562585, GSM562586, GSM562587
188 Histone_H3K9me3_from_N2_L3_larvae_(UP07442_H3K9ME3_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 1/4/09 2/17/10 released GSE22699, GSM562588, GSM562589, GSM562590
194 HCP-3_CENP-A_Mixed_Embryos_(OD00001_HCP3_N2_MXEMB) Lieb Desai ChIP-chip chromatin Target=hcp-3;AbName=OD00001_HCP3;Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 1/4/09 2/17/10 released , GSE15064, GSM376935, GSM376936, GSM376937, GSM376938, GSM376939, GSM376940, GSM376941, GSM376942, GSM376943
195 MES-4_FLAG_Early_Embryos_(SGF3165_FLAG_MES4FLAG_EEMB) Lieb Strome ChIP-chip chromatin Target=FLAG;AbName=SGF3165_FLAG;Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans MES4FLAG whole organism embryo: blastula embryo, gastrulating embryo 1/4/09 2/2/09 released computed_peaks/SGF3165_FLAG_MES4FLAG_EEMB_peaks.gff , GSE16133, GSM403975, GSM403976, GSM403977, GSM403978, GSM403979, GSM403980, GSM403981, GSM403982, GSM403983
201 H4AcTetra.S2 Karpen Pirrotta ChIP-chip chromatin modification Target=H4AcTetra;AbName=H4AcTetra;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 8/15/08 4/8/09 released repset.3211344.smoothedM.clusters.gff3 GSE20759, GSM520775, GSM520775, GSM520776, GSM520777, GSM520778, GSM520779
202 NA_MES4FLAG_EEMB Lieb Strome ChIP-chip chromatin Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans MES4FLAG whole organism embryo: blastula embryo, gastrulating embryo 1/15/09 12/4/09 released , GSE22700, GSM562591, GSM562592, GSM562593, GSM562594, GSM562595, GSM562596
214 DMG1 RTPCR Celniker Brent RTPCR gene model Reactions=431 Drosophila melanogaster CME L1 4/23/08 4/23/08 released DMG1_RTPCR.gff
215 DMG2 RTPCR Celniker Brent RTPCR gene model Reactions=440 Drosophila melanogaster CME L1 6/3/08 6/3/08 released DMG2_RTPCR.gff3
266 superseded by 2675 DMG3 Celniker Brent Computational annotation gene model Drosophila sp., Drosophila arizonae, Drosophila simulans, Drosophila melanogaster 2/9/09 3/17/09 replaced transcript_clusters/dm3_run2.gff3, models/DMG3.gff3
267 Dm_Kc167_nuclearRNA_p200_475-476-477_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 2/10/09 4/21/09 released Dro2_AS_Kc167_RNu_881.gff GSE16323, GSM409628, GSM409629, GSM409630
268 Dm_Kc167_polyApRNA_p200_145-146-147_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 2/10/09 4/21/09 released Dro2_AS_Kc167_RWP+_731.gff GSE16324, GSM409631, GSM409632, GSM409633
274 BEAF-HB.S2 Karpen Pirrotta ChIP-chip chromatin Target=BEAF-32;AbName=BEAF-HB;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.4620885.smoothedM.clusters.gff3 GSE20760, GSM520780, GSM520780, GSM520781, GSM520782, GSM520783
275 Chro(Chriz)BR.BG3 Karpen Kuroda ChIP-chip chromatin Target=Chro;AbName=Chro(Chriz)BR;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4620431.smoothedM.clusters.gff3 GSE20761, GSM520784, GSM520784, GSM520785, GSM520786, GSM520787
276 Chro(Chriz)BR.Clone_8 Karpen Kuroda ChIP-chip chromatin Target=Chro;AbName=Chro(Chriz)BR;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 2/12/09 10/12/09 released repset.4620313.smoothedM.clusters.gff3 GSE20762, GSM520788, GSM520788, GSM520789, GSM520790, GSM520791
277 Chro(Chriz)BR.Kc Karpen Kuroda ChIP-chip chromatin Target=Chro;AbName=Chro(Chriz)BR;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 2/12/09 10/12/09 released repset.4620425.smoothedM.clusters.gff3 GSE20763, GSM520792, GSM520792, GSM520793, GSM520794, GSM520795
278 Chro(Chriz)BR.S2 Karpen Kuroda ChIP-chip chromatin Target=Chro;AbName=Chro(Chriz)BR;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3833938.smoothedM.clusters.gff3 GSE20764, GSM520796, GSM520796, GSM520797, GSM520798, GSM520799
279 Chro(Chriz)WR.S2 Karpen Kuroda ChIP-chip chromatin Target=Chro;AbName=Chro(Chriz)WR;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3833943.smoothedM.clusters.gff3 GSE20765, GSM520800, GSM520800, GSM520801, GSM520802, GSM520803
280 CP190-VC.S2 Karpen Pirrotta ChIP-chip chromatin Target=Cp190;AbName=CP190-VC;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.4621849.smoothedM.clusters.gff3 GSE20766, GSM520804, GSM520804, GSM520805, GSM520806, GSM520807
282 CTCF-VC.BG3 Karpen Pirrotta ChIP-chip chromatin Target=CTCF;AbName=CTCF-VC;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4621686.smoothedM.clusters.gff3 GSE20767, GSM520808, GSM520808, GSM520809, GSM520810, GSM520811
283 CTCF-VC.S2 Karpen Pirrotta ChIP-chip chromatin Target=CTCF;AbName=CTCF-VC;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.4621693.smoothedM.clusters.gff3 GSE20768, GSM520812, GSM520812, GSM520813, GSM520814, GSM520815
284 Ez.S2 Karpen Pirrotta ChIP-chip chromatin Target=E(z);AbName=Ez;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3506179.smoothedM.clusters.gff3 GSE20769, GSM520816, GSM520816, GSM520817, GSM520818, GSM520819, GSM520820, GSM520821
285 GAF.S2 Karpen Pirrotta ChIP-chip chromatin Target=Trl;AbName=GAF;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3211334.smoothedM.clusters.gff3 GSE20770, GSM520822, GSM520822, GSM520823, GSM520824, GSM520825
288 H2B-ubiq (NRO3).BG3 Karpen Kuroda ChIP-chip chromatin modification Target=H2BUbiq;AbName=H2BUbiq NRO3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4620886.smoothedM.clusters.gff3 GSE20771, GSM520826, GSM520826, GSM520827, GSM520828, GSM520829
289 H2B-ubiq (NRO3).Kc Karpen Kuroda ChIP-chip chromatin modification Target=H2BUbiq;AbName=H2BUbiq NRO3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 2/12/09 10/12/09 released repset.4621049.smoothedM.clusters.gff3 GSE20772, GSM520830, GSM520830, GSM520831, GSM520832, GSM520833
290 H2B-ubiq (NRO3).S2 Karpen Kuroda ChIP-chip chromatin modification Target=H2BUbiq;AbName=H2BUbiq NRO3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.4162649.smoothedM.clusters.gff3 GSE20773, GSM520834, GSM520834, GSM520835, GSM520836, GSM520837
291 H3K18ac.BG3 Karpen Elgin ChIP-chip chromatin modification Target=H3K18Ac;AbName=H3K18Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4162513.smoothedM.clusters.gff3 GSE20774, GSM520838, GSM520838, GSM520839, GSM520840, GSM520841
292 H3K18ac.S2 Karpen Elgin ChIP-chip chromatin modification Target=H3K18Ac;AbName=H3K18Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3506196.smoothedM.clusters.gff3 GSE20775, GSM520842, GSM520842, GSM520843, GSM520844, GSM520845
293 H3K23ac.BG3 Karpen Elgin ChIP-chip chromatin modification Target=H3K23Ac;AbName=H3K23Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4620312.smoothedM.clusters.gff3 GSE20776, GSM520846, GSM520846, GSM520847, GSM520848, GSM520849
294 H3K23ac.S2 Karpen Elgin ChIP-chip chromatin modification Target=H3K23Ac;AbName=H3K23Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3506195.smoothedM.clusters.gff3 GSE20777, GSM520850, GSM520850, GSM520851, GSM520852, GSM520853, GSM520854
295 H3K27Ac.BG3 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4162469.smoothedM.clusters.gff3 GSE20778, GSM520855, GSM520855, GSM520856, GSM520857, GSM520858
296 H3K27Ac.S2 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 5/29/09 released repset.3211339.smoothedM.clusters.gff3 GSE20779, GSM520859, GSM520859, GSM520860, GSM520861, GSM520862
297 H3K27Me3 (Abcam2).BG3 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Abcam2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4162470.smoothedM.clusters.gff3 GSE20780, GSM520863, GSM520863, GSM520864, GSM520865, GSM520866
298 H3K27me3 (Abcam2).S2 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Abcam2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.4621697.smoothedM.clusters.gff3 GSE20781, GSM520867, GSM520867, GSM520868, GSM520869, GSM520870
299 H3K36me1.BG3 Karpen Kuroda ChIP-chip chromatin modification Target=H3K36Me1;AbName=H3K36Me1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4621048.smoothedM.clusters.gff3 GSE20782, GSM520871, GSM520871, GSM520872, GSM520873, GSM520874
301 H3K36me3.BG3 Karpen Kuroda ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4621052.smoothedM.clusters.gff3 GSE20783, GSM520875, GSM520875, GSM520876, GSM520877, GSM520878
302 H3K36me3.Kc Karpen Kuroda ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 2/12/09 10/12/09 released repset.4621046.smoothedM.clusters.gff3 GSE20784, GSM520879, GSM520879, GSM520880, GSM520881, GSM520882
303 H3K36me3.S2 Karpen Kuroda ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3211313.smoothedM.clusters.gff3 GSE20785, GSM520883, GSM520883, GSM520884, GSM520885, GSM520886
304 H3K4me1.S2 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3211335.smoothedM.clusters.gff3 GSE20786, GSM520887, GSM520887, GSM520888, GSM520889, GSM520890, GSM520891, GSM520892
305 H3K4Me3(LP).S2 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3 LP;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3211336.smoothedM.clusters.gff3 GSE20787, GSM520893, GSM520893, GSM520894, GSM520895, GSM520896, GSM520897, GSM520898
306 H3K79Me2.BG3 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K79Me2;AbName=H3K79Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4162473.smoothedM.clusters.gff3 GSE20788, GSM520899, GSM520899, GSM520900, GSM520901, GSM520902
307 H3K79Me2.S2 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K79Me2;AbName=H3K79Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3211314.smoothedM.clusters.gff3 GSE20789, GSM520903, GSM520903, GSM520904, GSM520905, GSM520906
309 H3K9ac.S2 Karpen Elgin ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3506200.smoothedM.clusters.gff3 GSE20790, GSM520907, GSM520907, GSM520908, GSM520909, GSM520910
310 H3K9me2-Ab2 (new lot).BG3 Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4620569.smoothedM.clusters.gff3 GSE20791, GSM520911, GSM520911, GSM520912, GSM520913, GSM520914
311 H3K9me2 antibody2.S2 Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/15/09 released repset.3506197.smoothedM.clusters.gff3 GSE20792, GSM520915, GSM520915, GSM520916, GSM520917, GSM520918
312 H3K9me3 (new lot).BG3 Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4620432.smoothedM.clusters.gff3 GSE20793, GSM520919, GSM520919, GSM520920, GSM520921, GSM520922
313 H3K9me3.S2 Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3506194.smoothedM.clusters.gff3 GSE20794, GSM520923, GSM520923, GSM520924, GSM520925, GSM520926
316 H4K16ac(L).BG3 Karpen Kuroda ChIP-chip chromatin modification Target=H4K16Ac;AbName=H4K16Ac L;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4620430.smoothedM.clusters.gff3 GSE20795, GSM520927, GSM520927, GSM520928, GSM520929, GSM520930
317 H4K16ac(L).Clone_8 Karpen Kuroda ChIP-chip chromatin modification Target=H4K16Ac;AbName=H4K16Ac L;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 2/12/09 10/12/09 released repset.4621692.smoothedM.clusters.gff3 GSE20796, GSM520931, GSM520931, GSM520932, GSM520933, GSM520934
318 H4K16ac(L).Kc Karpen Kuroda ChIP-chip chromatin modification Target=H4K16Ac;AbName=H4K16Ac L;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 2/12/09 10/12/09 released repset.4620427.smoothedM.clusters.gff3 GSE20797, GSM520935, GSM520935, GSM520936, GSM520937, GSM520938
319 H4K16ac(L).S2 Karpen Kuroda ChIP-chip chromatin modification Target=H4K16Ac;AbName=H4K16Ac L;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3833937.smoothedM.clusters.gff3 GSE20798, GSM520939, GSM520939, GSM520940, GSM520941, GSM520942
320 H4K16ac(M).S2 Karpen Kuroda ChIP-chip chromatin modification Target=H4K16Ac;AbName=H4K16Ac M;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3833941.smoothedM.clusters.gff3 GSE20799, GSM520943, GSM520943, GSM520944, GSM520945, GSM520946
321 H4K5ac.S2 Karpen Kuroda ChIP-chip chromatin modification Target=H4K5Ac;AbName=H4K5Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3211333.smoothedM.clusters.gff3 GSE20800, GSM520947, GSM520947, GSM520948, GSM520949, GSM520950
322 H4K8ac.S2 Karpen Kuroda ChIP-chip chromatin modification Target=H4K8Ac;AbName=H4K8Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3833940.smoothedM.clusters.gff3 GSE20801, GSM520951, GSM520951, GSM520952, GSM520953, GSM520954
324 mod2.2-VC.BG3 Karpen Pirrotta ChIP-chip chromatin Target=mod(mdg4);AbName=mod2.2-VC;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4621691.smoothedM.clusters.gff3 GSE20802, GSM520955, GSM520955, GSM520956, GSM520957, GSM520958
325 Pc.BG3 Karpen Pirrotta ChIP-chip chromatin Target=Pc;AbName=Pc;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 2/12/09 10/12/09 released repset.4162467.smoothedM.clusters.gff3 GSE20803, GSM520959, GSM520959, GSM520960, GSM520961, GSM520962
326 Pc.S2 Karpen Pirrotta ChIP-chip chromatin Target=Pc;AbName=Pc;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3211340.smoothedM.clusters.gff3 GSE20804, GSM520963, GSM520963, GSM520964, GSM520965, GSM520966
327 RNA pol II (ALG).Clone_8 Karpen Kuroda ChIP-chip chromatin Target=RpII215;AbName=RNA pol II (ALG);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 2/12/09 10/12/09 released repset.4621053.smoothedM.clusters.gff3 GSE20805, GSM520967, GSM520967, GSM520968, GSM520969, GSM520970
328 RNA pol II (ALG).Kc Karpen Kuroda ChIP-chip chromatin Target=RpII215;AbName=RNA pol II (ALG);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 2/12/09 10/12/09 released repset.4621047.smoothedM.clusters.gff3 GSE20806, GSM520971, GSM520971, GSM520972, GSM520973, GSM520974
329 RNA pol II (ALG).S2 Karpen Kuroda ChIP-chip chromatin Target=RpII215;AbName=RNA pol II (ALG);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.4162648.smoothedM.clusters.gff3 GSE20807, GSM520975, GSM520975, GSM520976, GSM520977, GSM520978
330 SU(HW)-HB.S2 Karpen Pirrotta ChIP-chip chromatin Target=su(Hw);AbName=SU(HW)-HB;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.4621225.smoothedM.clusters.gff3 GSE20808, GSM520979, GSM520979, GSM520980, GSM520981, GSM520982
331 Su(Hw)-VC.S2 Karpen Pirrotta ChIP-chip chromatin Target=su(Hw);AbName=Su(Hw)-VC;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.4621850.smoothedM.clusters.gff3 GSE20809, GSM520983, GSM520983, GSM520984, GSM520985, GSM520986
332 Trx-C.S2 Karpen Pirrotta ChIP-chip chromatin Target=trx;AbName=Trx-C;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 2/12/09 10/12/09 released repset.3211337.smoothedM.clusters.gff3 GSE20810, GSM520987, GSM520987, GSM520988, GSM520989, GSM520990
333 deprecated by 642 mid_L2_20dC_14hrs_post_L1 Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: L2 larva 3/5/09 11/19/09 replaced
334 DPY-26_N2_Mixed_Embryos_(JL00003_DPY26_N2_MXEMB) Lieb Lieb ChIP-chip chromatin Target=dpy-26;AbName=JL00003_DPY26;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 2/17/09 3/17/09 released GSE16132, GSM403972, GSM403972, GSM403973, GSM403974
336 MIX-1_N2_Mixed_Embryos_(JL00004_MIX1_N2_MXEMB) Lieb Lieb ChIP-chip chromatin Target=mix-1;AbName=JL0004_MIX1;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 2/19/09 3/22/09 released GSE16268, GSM409467, GSM409467, GSM409468, GSM409469
337 Dm_ML-DmBG2-c2_TotalRNA_p200_470-472-474_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG2-c2 2/18/09 2/18/09 released Dro2_AS_ML-DmBG2-c2_882.gff GSE16325, GSM409634, GSM409635, GSM409636
338 SDC-2_N2_Mixed_Embryos (JL00005_SDC2_N2_MXEMB) Lieb Lieb ChIP-chip chromatin Target=sdc-2;AbName=JL0005_SDC2;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 2/24/09 3/24/09 released computed_peaks/JL00005_SDC2_N2_MXEMB_peaks.gff , GSE22701, GSM562597, GSM562598, GSM562599
339 DMG3 RTPCR Celniker Brent RTPCR gene model Reactions=224 Drosophila melanogaster CME L1 2/27/09 3/23/09 released DMG3_RTPCR.gff3
340 DMG4 RTPCR Celniker Brent RTPCR gene model Reactions=312 Drosophila melanogaster CME L1 2/27/09 3/22/09 released DMG4_RTPCR.gff3
342 Dm Kc167 Poly-Ap p200 467 C-tailed RNA-Seq Nexalign Celniker Gingeras RNA-seq transcription Drosophila melanogaster Kc167 2/27/08 9/29/09 released GSM451119
343 Dm embryo 16-18h C-tailed RNA-Seq NexAlign Celniker Gingeras RNA-seq transcription Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 17 2/27/08 9/23/09 released GSM439966
346 Adult_Female_H3K27Me3 White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/3/09 4/8/09 released AdultFemale_K27Me3.dcc.gff
358 L3_H3K9me3 White White ChIP-chip chromatin modification Target=H3K9Me3,His3:CG33806;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 3/6/09 7/6/09 released L3_K9Me3.dcc.gff
359 L3_H3K27Me3 White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 3/6/09 7/24/09 released L3_K27Me3.dcc.gff GSM385341
360 Dm Kc167 m200 Tap RiboM C-tailed RNA-Seq NexAlign Celniker Gingeras RNA-seq transcription Drosophila melanogaster Kc167 2/27/08 9/23/09 released GSM451044
362 Dm S2-DRSC m200 Tap RiboM C-tailed RNA-Seq NexAlign Celniker Gingeras RNA-seq transcription Drosophila melanogaster S2-DRSC 2/27/08 9/23/09 released GSM451127
364 Dm Cl.8 m200 Tap RiboM C-tailed RNA-Seq NexAlign Celniker Gingeras RNA-seq transcription Drosophila melanogaster CME W1 Cl.8+ 2/27/08 9/23/09 released GSM451031
366 Dm BG3-c2 m200 Tap RiboM C-tailed RNA-Seq NexAlign Celniker Gingeras RNA-seq transcription Drosophila melanogaster ML-DmBG3-c2 2/27/08 9/23/09 released GSM450972
370 E20_24_H3K27me3 ChIP-chip White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage 3/8/09 10/15/09 released E20-24_K27Me3.dcc.gff GSM384807
371 L2_H3K27me3 White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 3/8/09 10/12/09 released L2_K27Me3.dcc.gff
372 AdultMale-H3K27me3 White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/8/09 7/29/09 released AdultMale_K27Me3.dcc.gff
373 L1_H3K27Me3 White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 3/8/09 7/29/09 released L1_K27Me3.dcc.gff GSM384817
374 L1_H3K9Me3 White White ChIP-chip chromatin modification Target=H3K9Me3,His3:CG33806;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 3/8/09 7/29/09 released L1_K9Me3.dcc.gff GSM384750
375 L2_H3K9Me3 White White ChIP-chip chromatin modification Target=H3K9Me3,His3:CG33806;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 3/8/09 7/29/09 released L2_K9Me3.dcc.gff GSM384760
376 E-16-20h_H3K27Me3 White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/8/09 7/29/09 released E16-20_K27Me3.dcc.gff GSM384797
377 E-20-24h-H3K9Me3 White White ChIP-chip chromatin modification Target=H3K9Me3,His3:CG33806;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/8/09 7/29/09 released E20-24_K9Me3.dcc.gff GSM384741
381 Pupae_H3K9Ac White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 3/9/09 8/25/09 released Pupae_H3K9Ac_merged_dcc.gff
382 Pupae_H3K4me3 White White ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 3/9/09 10/12/09 released Pupae_H3K4Me3_merged_dcc.gff
383 Pupae_H3K4me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 3/9/09 10/12/09 released Pupae_H3K4Me1_merged_dcc.gff
384 Pupae_H3K27ac White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 3/9/09 10/12/09 released Pupae_H3K27Ac_merged_dcc.gff
386 L3_H3K9ac White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 3/9/09 10/12/09 released L3_H3K9Ac_agilent_dmel3_merged_dcc.gff
387 L3_H3K4me3 White White ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 3/9/09 10/12/09 released L3_H3K4Me3_merged_dcc.gff
388 L3_H3K4me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 3/9/09 10/12/09 released L3_H3K4Me1_merged_dcc.gff
389 L3_H3K27ac White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 3/9/09 10/12/09 released L3_H3K27Ac_merged_dcc.gff
391 L2-H3K9AC White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 3/9/09 7/29/09 released L2_K9Ac_agilent_dmel3_merged_dcc.gff GSM386158
392 L2-H3K4Me3 White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 3/9/09 7/29/09 released L2_K4Me3_agilent_dmel3_merged_dcc.gff GSM386125
393 L2_H3K4me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 3/9/09 10/12/09 released L2_H3K4Me1_merged_dcc.gff
394 L2_H3K27ac White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 3/9/09 10/12/09 released L2_H3K27Ac_merged_dcc.gff
396 L1-H3K9AC White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 3/9/09 7/29/09 released L1_K9AC_agilent_dmel3_merged_dcc.gff GSM386148
397 L1-H3K4Me3 White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 3/9/09 7/29/09 released L1_K4Me3_agilent_dmel3_merged_dcc.gff GSM386115
398 L1_H3K4me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 3/9/09 10/12/09 released L1_H3K4Me1_merged_dcc.gff
399 L1_H3K27ac White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 3/9/09 3/9/09 released L1_H3K27Ac_merged_dcc.gff
401 E4-8_H3K9ac White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 3/9/09 10/12/09 released E4-8_H3K9Ac_merged_dcc.gff
402 E-4-8h-H3K4Me3 White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 3/9/09 7/29/09 released E4-8-K4Me3_agilent_dmel3_merged_dcc.gff GSM386088
403 E-4-8h-H3K4Me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 3/9/09 10/12/09 released E4-8-K4Me1_agilent_dmel3_merged_dcc.gff
404 E-4-8h-H3K27AC White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 3/9/09 3/9/09 released E4-8-K27Ac_agilent_dmel3_merged_dcc.gff
406 E20-24_H3K9ac White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/9/09 10/12/09 released E20-24_H3K9Ac_merged_dcc.gff
407 E-20-24h-H3K4Me3 White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/9/09 7/29/09 released E20-24_K4Me3_agilent_dmel3_merged_dcc.gff GSM386106
408 E-20-24h-H3K4Me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/9/09 7/29/09 released E20-24_K4Me1_agilent_dmel3_merged_dcc.gff GSM386069
409 E20-24_H3K27ac White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/9/09 10/12/09 released E20-24_H3K27Ac_merged_dcc.gff
410 E16-20_H3K9me3 White White ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/9/09 10/12/09 released E16-20_K9Me3.dcc.gff
411 E16-20_H3K9Ac ChIP-chip White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/9/09 3/9/09 released E16-20_H3K9Ac_merged_dcc.gff
412 E-16-20h-H3K4Me3 White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/9/09 7/29/09 released E16-20_K4Me3_agilent_dmel3_merged_dcc.gff GSM386097
413 E-16-20h-H3K4Me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/9/09 3/9/09 released E16-20_K4Me_agilent_dmel3_merged_dcc.gff GSM386060
414 E16-20_H3K27ac White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 3/9/09 10/12/09 released E16-20_H3K27Ac_merged_dcc.gff
415 E12-16_H3K9me3 White White ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 3/9/09 10/12/09 released E12-16_K9Me3.dcc.gff
416 E-12-16h-H3K9AC White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 3/9/09 7/29/09 released E12-16-K9Ac_agilent_dmel3_merged_dcc.gff GSM386138
417 E-12-16h-H3K4Me3 White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 3/9/09 7/29/09 released E12-16_K4Me3.dcc.gff GSM385397
418 E-12-16h-H3K4Me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 3/9/09 7/29/09 released E12-16_K4Me1_agilent_dmel3_merged_dcc.gff GSM386051
419 E12-16_H3K27ac White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 3/9/09 10/12/09 released E12-16_H3K27Ac_merged_dcc.gff
420 E0-4_H3K9me3 White White ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 3/9/09 10/12/09 released E0-4_K9Me3.dcc.gff
421 E0-4_H3K9ac White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 3/9/09 10/12/09 released E0-4_H3K9Ac_merged_dcc.gff
422 E0-4_H3K4me3 White White ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 3/9/09 10/12/09 released E0-4_H3K4Me3_merged_dcc.gff
423 E-0-4h-H3K4Me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 3/9/09 10/12/09 released E0-4_K4Me1_agilent_dmel3_merged_dcc.gff
424 E-0-4h-H3K27Ac ChIP-chip White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 3/9/09 10/15/09 released E0-4_H3K27Ac_merged_dcc.gff
425 AdMale_H3K9me3 White White ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/9/09 10/12/09 released AdultMale_K9Me3.dcc.gff
426 AdMale_H3K9ac White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/9/09 10/12/09 released AdultMale_H3K9Ac_merged_dcc.gff
427 AdultMale H3K4Me3 ChIP-chip White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/9/09 7/29/09 released male-h3k4me3_agilent_dmel3_merged_dcc.gff GSM386996
428 AdultMale-H3K4Me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/9/09 3/9/09 released AdultMale_K4Me1_agilent_dmel3_merged_dcc.gff
429 AdFem_H3K9me3 White White ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/9/09 3/9/09 released AdultFemale_K9Me3.dcc.gff
430 AdultFemale-H3K9AC White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/9/09 3/9/09 released AdultFemale_K9Ac_agilent_dmel3_merged_dcc.gff
431 AdFem_H3K4me3 White White ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/9/09 10/12/09 released AdultFemale_K4Me3_merged_dcc.gff
432 AdFem_H3K4me1 White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 3/9/09 10/12/09 released AdultFemale_H3K4Me1_merged_dcc.gff
433 deprecated by 2354 Young_Adult_25dC_46hrs_post-L1 RNAseq Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 3/9/09 11/16/09 replaced
444 deprecated by 2502 Salt_Extracted_Pellet Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2 3/16/09 3/22/09 replaced GSM333864
445 C. elegans Intron Identification.set.20090106.2_3_2_2_3_2_2_2_2 Waterston Green RTPCR gene model Reactions=1020;Features=1411 Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, all stages, dauer larva, embryo 12/2/08 1/25/09 released set.20090106.2_3_2_2_3_2_2_2_2.gff
446 C. elegans Intron Identification set.20090106.2_3_2_2_4_4_3_2_2 Waterston Green RTPCR gene model Reactions=26;Features=31 Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, all stages, dauer larva, embryo 12/2/08 1/25/09 released set.20090106.2_3_2_2_4_4_3_2_2.gff
447 C. elegans Intron Identification set.20090106.2_3_2_2_5_3_3_2_2 Waterston Green RTPCR gene model Reactions=108;Features=187 Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, all stages, dauer larva, embryo 12/2/08 1/31/09 released set.20090106.2_3_2_2_5_3_3_2_2.gff
448 C. elegans Intron Identification set.20090106.2_3_2_2_4_3_3_2_2 Waterston Green RTPCR gene model Reactions=4781;Features=7374 Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, all stages, dauer larva, embryo 12/8/08 1/25/09 released set.20090106.2_3_2_2_4_3_3_2_2.gff
455 embryo panneural tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NW1229 neuron embryo: embryo 3/23/09 11/4/09 released emb-panneural_tars_maxgap30_minrun100_thresh8.26.gff3 GSE23245, GSM571416, GSM571416, GSM571417, GSM571418
456 embryo all cells reference tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 embryonic cell, organism embryo: embryo 3/23/09 11/4/09 released emb-reference_tars_maxgap30_minrun100_thresh8.60.gff3 GSE23246, GSM571419, GSM571419, GSM571420, GSM571421
457 embryo intestine tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans JR1130 intestinal cell embryo: embryo 3/23/09 11/4/09 released emb-intestine_tars_maxgap30_minrun100_thresh6.96.gff3 GSE23247, GSM571422, GSM571422, GSM571423, GSM571424
458 embryo coelomocytes tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans TV1112 coelomocyte embryo: embryo 3/23/09 11/4/09 released emb-coelomocytes_tars_maxgap30_minrun100_thresh7.60.gff3 GSE23248, GSM571425, GSM571425, GSM571426, GSM571427
459 embryo AVA neurons tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC1749 AVA embryo: embryo 3/23/09 11/4/09 released emb-AVA_tars_maxgap30_minrun100_thresh9.17.gff3 GSE23249, GSM571428, GSM571428, GSM571429, GSM571430
460 L3-L4 PVD & OLL neurons tiling array Waterston Miller tiling array: RNA transcription Target=ser-2;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC1021 PVD, OLL larva: L3-L4 molt 3/23/09 11/19/09 released L3-L4-PVD_OLL_tars_maxgap30_minrun100_thresh7.00.gff3 GSE23250, GSM571431, GSM571431, GSM571432, GSM571433
461 L2 reference (mockIP) tiling array Waterston Miller tiling array: RNA transcription Target=FLAG;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 organism larva: L2 larva 3/23/09 11/19/09 released L2-reference_tars_maxgap30_minrun100_thresh9.34.gff3 GSE23251, GSM571434, GSM571434, GSM571435, GSM571436
462 L2 panneural tiling array Waterston Miller tiling array: RNA transcription Target=F25B3.3;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans SD1241 neuron larva: L2 larva 3/23/09 11/19/09 released L2-panneural_tars_maxgap30_minrun100_thresh6.42.gff3 GSE23252, GSM571437, GSM571437, GSM571438, GSM571439
463 L2 intestine tiling array Waterston Miller tiling array: RNA transcription Target=ges-1;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans SD1084 intestine larva: L2 larva 3/23/09 11/19/09 released L2-intestine_tars_maxgap30_minrun100_thresh7.88.gff3 GSE23253, GSM571440, GSM571440, GSM571441, GSM571442
464 L2 excretory cell tiling array Waterston Miller tiling array: RNA transcription Target=clh-4;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC1598 excretory cell larva: L2 larva 3/23/09 11/19/09 released L2-excretory_cell_tars_maxgap30_minrun100_thresh9.16.gff3 GSE23254, GSM571443, GSM571443, GSM571444, GSM571445
465 L2 body wall muscle tiling array Waterston Miller tiling array: RNA transcription Target=myo-3;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans SD1075 body wall muscle cell larva: L2 larva 3/23/09 11/19/09 released L2-bwm_tars_maxgap30_minrun100_thresh7.60.gff3 GSE23255, GSM571446, GSM571446, GSM571447, GSM571448
466 L2 GABA neurons tiling array Waterston Miller tiling array: RNA transcription Target=C04G2.1;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC1627 AVL, DVB, RME, RIS, DD1, DD2, DD3, DD4, DD5, DD6, VD1, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 larva: L2 larva 3/23/09 11/19/09 released L2-GABA_neurons_tars_maxgap30_minrun100_thresh9.50.gff3 GSE23256, GSM571449, GSM571449, GSM571450, GSM571451
467 embryo dopaminergic neurons tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans BY200 ADE, CEP, dopaminergic neuron embryo: embryo 3/23/09 11/4/09 released emb-dop_tars_maxgap30_minrun100_thresh9.17.gff3 GSE23257, GSM571452, GSM571452, GSM571453, GSM571454
468 embryo GABA motor neurons tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans CZ1200 GABAergic neuron, DD neuron, RME, RIS, AVL embryo: embryo 3/23/09 11/4/09 released emb-GABA_tars_maxgap30_minrun100_thresh9.37.gff3 GSE23258, GSM571455, GSM571455, GSM571456, GSM571457
469 L2 A-class neuron tiling array Waterston Miller tiling array: RNA transcription Target=unc-119;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC694 DA neuron, VA neuron, SAB, AVF, pharyngeal neuron, I5 larva: L2 larva 3/23/09 11/19/09 released L2-A-class_tars_maxgap30_minrun100_thresh9.25.gff3 GSE23259, GSM571458, GSM571458, GSM571459, GSM571460
470 embryo body wall muscle tiling array (v2) Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans PD4251 body wall muscle cell embryo: embryo 3/23/09 3/23/09 released emb-bwm-v2_tars_maxgap30_minrun100_thresh8.65.gff3 GSE23260, GSM571461, GSM571461, GSM571462, GSM571463
472 L2 25dC 14hrs post-L1 N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 whole organism larva: L2 larva 3/23/09 8/3/09 released L2_tars_maxgap30_minrun100_thresh5.59.gff3 GSE23261, GSM571464, GSM571464, GSM571465, GSM571466
473 L4 25dC 36hrs post-L1 N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 whole organism larva: L4 larva 3/23/09 8/3/09 released L4_tars_maxgap30_minrun100_thresh5.75.gff3 GSE23262, GSM571467, GSM571467, GSM571468, GSM571469
474 L3 25dC 25hrs post-L1 N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 whole organism larva: L3 larva 3/23/09 8/3/09 released L3_tars_maxgap30_minrun100_thresh5.82.gff3 GSE23263, GSM571470, GSM571470, GSM571471, GSM571472
475 young adult 25dC 42hrs post-L1 N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 3/23/09 8/3/09 released YA_tars_maxgap30_minrun100_thresh5.95.gff3 GSE23264, GSM571473, GSM571473, GSM571474, GSM571475
476 early embryo 20dC 0-4hrs post-fertilization N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 3/23/09 8/3/09 released N2EE_tars_maxgap30_minrun100_thresh6.26.gff3 GSE23265, GSM571476, GSM571476, GSM571477, GSM571478
477 L2 polyA enriched 20dC 14hrs post-L1 N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 whole organism larva: L2 larva 3/23/09 8/3/09 released L2poA_tars_maxgap30_minrun100_thresh9.12.gff3 GSE23266, GSM571479, GSM571479, GSM571480
478 male L4 25dC 36hrs post-L1 CB4689 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans CB4689 whole organism larva: L4 larva male 3/23/09 8/3/09 released MALE_tars_maxgap30_minrun100_thresh6.46.gff3 GSE23267, GSM571481, GSM571481, GSM571482, GSM571483
479 late embryo 20dC 6-12hrs post-fertilization N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 whole organism embryo: elongating embryo, enclosing embryo, fully-elongated embryo, late cleavage stage embryo 3/23/09 8/3/09 released N2LE_tars_maxgap30_minrun100_thresh6.48.gff3 GSE23268, GSM571484, GSM571484, GSM571485, GSM571486
480 deprecated by 484 Reinke_L1 Waterston Reinke tiling array: RNA transcription DNAseTreatment=no;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 whole organism larva: L1 larva 9/23/09 3/24/09 replaced
481 gonad from young adult 20dC 42hrs post-L1 N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 hermaphrodite gonad larva: newly molted young adult hermaphrodite 3/23/09 8/3/09 released GON_tars_maxgap30_minrun100_thresh7.11.gff3 GSE23269, GSM571487, GSM571487, GSM571488, GSM571489
482 deprecated by 485 Reinke_JKL4 Waterston Reinke tiling array: RNA transcription DNAseTreatment=no;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans JK1107 whole organism larva: L4 larva 9/23/09 3/24/09 replaced
484 L1 20dC 0hrs post-L1 N2 tiling array Waterston Reinke tiling array: RNA transcription DNAseTreatment=no;Array=25 base pairs;ArrayPlatform=Affymetrix;Version=2 Caenorhabditis elegans N2 whole organism larva: L1 larva 3/23/09 3/24/09 released L1-NDT_tars_maxgap30_minrun100_thresh7.64.gff3 GSE23270, GSM571490, GSM571490, GSM571491, GSM571492
485 soma-only mid-L4 25dC 36hrs post-L1 JK1107 tiling array Waterston Reinke tiling array: RNA transcription DNAseTreatment=no;Array=25 base pairs;ArrayPlatform=Affymetrix;Version=2 Caenorhabditis elegans JK1107 whole organism larva: L4 larva 3/23/09 3/24/09 released JKL4-NDT_tars_maxgap30_minrun100_thresh5.39.gff3 GSE23271, GSM571493, GSM571493, GSM571494, GSM571495
486 pathogen Pluminscens 25dC 24hr exposure post-adulthood N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix EnvironmentalTreatment=food:P. luminescens (Hb) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 3/23/09 8/3/09 released Pl-24_tars_maxgap30_minrun100_thresh7.08.gff3 GSE23272, GSM571496, GSM571496, GSM571497, GSM571498
487 pathogen Efaecalis 25dC 24hr exposure post-adulthood N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix EnvironmentalTreatment=food:E. faecalis (OG1RF) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 3/23/09 8/3/09 released Ef-24_tars_maxgap30_minrun100_thresh7.13.gff3 GSE23273, GSM571499, GSM571499, GSM571500
488 pathogen Smarcescens 25dC 48hr exposure post-adulthood N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix EnvironmentalTreatment=food:S. marcescens (Db11) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 3/23/09 8/3/09 released Db-48_tars_maxgap30_minrun100_thresh7.33.gff3 GSE23274, GSM571501, GSM571501, GSM571502, GSM571503
489 pathogen Smarcescens 25dC 24hr exposure post-adulthood N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix EnvironmentalTreatment=food:S. marcescens (Db11) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 3/23/09 8/3/09 released Db-24_tars_maxgap30_minrun100_thresh5.95.gff3 GSE23275, GSM571504, GSM571504, GSM571505, GSM571506
490 pathogen control OP50 25dC 48hr exposure post-adulthood N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix EnvironmentalTreatment=food:E. coli (OP50) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 3/23/09 8/3/09 released OP50-48_tars_maxgap30_minrun100_thresh6.06.gff3 GSE23276, GSM571507, GSM571507, GSM571508, GSM571509
491 pathogen control OP50 25dC 24hr exposure post-adulthood N2 tiling array Waterston Reinke tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix EnvironmentalTreatment=food:E. coli (OP50) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 3/23/09 8/3/09 released OP50-24_tars_maxgap30_minrun100_thresh5.57.gff3 GSE23277, GSM571510, GSM571510, GSM571511, GSM571512
512 deprecated by 650 S2_DRSC_PE_RNA_Seq Celniker Gravely RNA-seq RNA profiling Drosophila melanogaster S2-DRSC 9/17/09 7/15/09 replaced
513 Dm_OregonR_embryo_2-4h_totalRNA_p200_127-128-129_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 4/14/09 4/30/09 released Dro2_AS_Dm_emb_4h_OR_656.gff GSE16326, GSM409637, GSM409638, GSM409639
514 Dm_OregonR_embryo_14-16h_totalRNA_p200_130-131-132_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 16 4/15/09 4/21/09 released Dro2_AS_Dm_emb_16h_OR_657.gff GSE16327, GSM409640, GSM409641, GSM409642
515 3'UTRome CEUP1 sequences, alignments, annotation Piano Piano RACE gene model Reactions=2694 Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, embryo, larva 4/21/09 5/13/09 released UTRome_ABI.WS180.CEUP1.20090422.gff3
517 deprecated by 753 Lai_GSM286611 Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 11-13 9/17/09 4/8/09 replaced
518 deprecated by 754 Lai_GSM286607 Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 11-13 9/17/09 4/3/09 replaced
519 deprecated by 755 Lai_GSM286604 Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 9/17/09 4/6/09 replaced
526 Dm Dcr-2[L811fsX] Ovary smallRNA RNA-Seq Lai Hannon RNA-seq RNA profiling Drosophila melanogaster Dcr-2[L811fsX] ovary adult: adult stage 11/8/08 2/3/10 released GSM280083
530 deprecated by 772 Lai_GSM280085_adult_testes Lai Hannon RNA-seq RNA profiling Drosophila melanogaster Oregon-R-modENCODE testis adult: adult stage 9/17/09 9/29/09 replaced
536 deprecated by 2517 80mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster mixed: S2, S2-DRSC 4/27/09 5/3/09 replaced GSM333846
538 Dro2_AS_Dm_L3-12hr_larvae Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism larva: larval stage, third instar larval stage 4/29/09 5/28/09 released Dro2_AS_Dm_L3-12hr_larvae_875.gff GSE23220, GSM571096, GSM571096, GSM571097, GSM571098
539 Dro2_AS_L3-larvae-clear Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism larva: larval stage 4/29/09 5/28/09 released Dro2_AS_L3-larvae-clear_802.gff GSE23221, GSM571099, GSM571099, GSM571100, GSM571101
540 Dro2_AS_L3-larvae-light-blue Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism larva: larval stage, third instar larval stage 4/29/09 5/28/09 released Dro2_AS_L3-larvae-light-blue_790.gff GSE23222, GSM571102, GSM571102, GSM571103, GSM571104
541 Dro2_AS_Dm_WPP+2days Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism pupae: pharate adult stage, pharate adult stage P8 4/29/09 5/18/09 released Dro2_AS_Dm_WPP+2days_804.gff GSE23223, GSM571105, GSM571105, GSM571106, GSM571107
542 Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep3day_TotalRNA_p200_350-352-354_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism pupae: pharate adult stage, pharate adult stage P9 4/29/09 4/30/09 released Dro2_AS_Dm_WPP+3days_878.gff GSE16328, GSM409643, GSM409644, GSM409645
543 Dro2_AS_Dm_WPP+4days Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism pupae: pharate adult stage, pharate adult stage P15, pharate adult stage P15(i) 4/29/09 4/30/09 released Dro2_AS_Dm_WPP+4days_879.gff GSE16329, GSM409646, GSM409647, GSM409648
544 Dm_y[1]cn[1] bw[1] sp[1]_prepupa_WhitePrePupap12h_TotalRNA_p200_332-334-336_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism larva: prepupal stage, prepupal stage P4, prepupal stage P4(i), prepupal stage P4(ii) 4/29/09 4/30/09 released Dro2_AS_Dm_WPP+12hr_876.gff GSE23224, GSM571108, GSM571108, GSM571109, GSM571110
545 Dro2_AS_Dm_WPP+24hr Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage, pupal stage P6 4/29/09 4/30/09 released Dro2_AS_Dm_WPP+24hr_877.gff GSE16330, GSM409649, GSM409650, GSM409651
553 SDC-3_N2_MXEMB_1A_(JL00002_SDC3_N2_MXEMB_1_A) Lieb Lieb ChIP-chip chromatin Target=sdc-3;AbName=JL00002_SDC3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 5/5/09 5/29/09 released , GSE22702, GSM562600
555 Cell line Total RNA samples Celniker Cherbas Sample creation (metadata only) Drosophila melanogaster mixed 5/5/09 5/27/09 released
559 Cell line Nuclear RNA samples Celniker Cherbas Sample creation (metadata only) Drosophila melanogaster mixed 5/5/09 5/28/09 released
560 Cell line polyA RNA samples Celniker Cherbas Sample creation (metadata only) Drosophila melanogaster mixed 5/5/09 5/27/09 released
574 Dev Timecourse TotalRNA isolation Celniker Cherbas Sample creation (metadata only) Drosophila melanogaster Oregon-R-modENCODE, y; cn bw sp whole organism mixed: embryonic stage 1-2, adult stage, cleavage stage, dorsal closure stage, early extended germ band stage, egg stage, embryonic stage, extended germ band stage, fertilized egg stage, first instar larval stage, gastrula stage, larval stage, late embryonic stage, late extended germ band stage, pharate adult stage, pharate adult stage P15, pharate adult stage P15(i), pharate adult stage P8, pharate adult stage P9, pre-blastoderm stage, prepupal stage, prepupal stage P1, prepupal stage P4, prepupal stage P4(i), prepupal stage P4(ii), pupal stage, pupal stage P6, second instar larval stage, third instar larval stage, unfertilized egg stage, embryonic stage 5-17 5/6/09 5/28/09 released
575 SDC-3_N2_MXEMB_1B_(JL00002_SDC3_N2_MXEMB_1_B) Lieb Lieb ChIP-chip chromatin Target=sdc-3;AbName=JL00002_SDC3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 5/6/09 5/29/09 released , GSE22703, GSM562601
577 Dev Timecourse polyA RNA samples Celniker Cherbas Sample creation (metadata only) Drosophila melanogaster y; cn bw sp early embryonic cell, blastoderm cell, gastrula cell embryo: embryonic stage 1-2, cleavage stage, dorsal closure stage, early extended germ band stage, egg stage, embryonic stage, extended germ band stage, fertilized egg stage, gastrula stage, late embryonic stage, late extended germ band stage, pre-blastoderm stage, unfertilized egg stage, embryonic stage 5-17 5/6/09 5/27/09 released
578 DPY-27_N2_MXEMB_1A_(JL00001_DPY27_N2_MXEMB_1_A) Lieb Lieb ChIP-chip chromatin Target=dpy-27;AbName=JL00001_DPY27;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 5/7/09 5/29/09 released , GSE22704, GSM562602
581 AdFem_H3K9ac White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 5/7/09 5/7/09 released AdultFemale_H3K9Ac_merged_dcc.gff
582 Snyder_PHA4_GFP_emb Snyder Snyder ChIP-seq chromatin Target=pha-4;AbName=eGFP Caenorhabditis elegans OP37 whole organism embryo: embryo 5/27/09 5/28/09 released Snyder_PHA4_GFP_emb_combined_peaks.GFF3 GSM363861
584 Snyder_PHA4_StarvedL1_GFP Snyder Snyder ChIP-seq chromatin Target=pha-4;AbName=eGFP Caenorhabditis elegans OP37 whole organism larva: L1 larva 5/27/09 6/2/09 released Snyder_PHA4_GFP_Starved-L1_combined_peaks.GFF3 GSM363863
585 Snyder_PHA4_GFP_FedL1 Snyder Snyder ChIP-seq chromatin Target=pha-4;AbName=eGFP Caenorhabditis elegans OP37 whole organism larva: L1 larva 5/27/09 6/2/09 released Snyder_PHA4_GFP_FedL1_combined_peaks.GFF3
586 Snyder_PHA4_POLII_emb Snyder Snyder ChIP-seq chromatin Target=pha-4;AbName=RNA Polymerase II Caenorhabditis elegans OP37 whole organism embryo: embryo 5/27/09 6/2/09 released Snyder_PHA4_POLII_emb_combined_peaks.GFF3 GSM363861
587 Snyder_PHA4_POLII_FedL1 Snyder Snyder ChIP-seq chromatin Target=pha-4;AbName=RNA Polymerase II Caenorhabditis elegans OP37 whole organism larva: L1 larva 5/27/09 6/2/09 released Snyder_PHA4_POLII_FedL1_combined_peaks.GFF3
588 Snyder_PHA4_StarvedL1_POLII Snyder Snyder ChIP-seq chromatin Target=pha-4;AbName=RNA Polymerase II Caenorhabditis elegans OP37 whole organism larva: L1 larva 5/27/09 6/2/09 released Snyder_PHA4_POLII_Starved-L1_combined_peaks.GFF3 GSM363863
589 Snyder_AMA1_GFP_L4YA Snyder Snyder ChIP-seq chromatin Target=ama-1;AbName=eGFP Caenorhabditis elegans OP34 whole organism larva: L4 larva, L4-adult molt, newly molted young adult hermaphrodite 5/27/09 5/29/09 released Snyder_AMA1_GFP_L4YA_combined_peaks.GFF3 GSM389310
590 Snyder_AMA1_POLII_L4YA Snyder Snyder ChIP-seq chromatin Target=ama-1;AbName=RNA Polymerase II Caenorhabditis elegans OP34 whole organism larva: L4 larva, L4-adult molt, newly molted young adult hermaphrodite 5/27/09 5/29/09 released Snyder_AMA1_POLII_L4YA_combined_peaks.GFF3 GSM389310
591 Snyder_DAF16_GFP_L4YA Snyder Snyder ChIP-seq chromatin Target=daf-16;AbName=eGFP Caenorhabditis elegans TJ356 whole organism larva: L4 larva, L4-adult molt, newly molted young adult hermaphrodite 5/27/09 6/2/09 released Snyder_DAF16_GFP_L4YA_combined_peaks.GFF3 GSM389648
592 Snyder_DAF16_POLII_L4YA Snyder Snyder ChIP-seq chromatin Target=daf-16;AbName=RNA Polymerase II Caenorhabditis elegans TJ356 whole organism larva: L4 larva, L4-adult molt, newly molted young adult hermaphrodite 5/27/09 6/2/09 released Snyder_DAF16_POLII_L4YA_combined_peaks.GFF3 GSM389648
593 Snyder_MAB5_GFP_L3 Snyder Snyder ChIP-seq chromatin Target=mab-5;AbName=eGFP Caenorhabditis elegans OP26 whole organism larva: L3 larva 5/27/09 5/29/09 released Snyder_MAB5_GFP_L3_combined_peaks.GFF3 GSM391227
594 Snyder_MAB5_POLII_L3 Snyder Snyder ChIP-seq chromatin Target=mab-5;AbName=RNA Polymerase II Caenorhabditis elegans OP26 whole organism larva: L3 larva 5/27/09 5/29/09 released Snyder_MAB5_POLII_L3_combined_peaks.GFF3
597 E0-12 GROAviva ChIP-chip White White ChIP-chip chromatin Target=gro;AbName=KW0:GRO;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 5/31/09 10/16/09 released data/GROAviva_analysis/MAT_GROAviva.bed_dcc.gff GSM400373
598 deprecated by 2521 80-150_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster mixed: S2, S2-DRSC 6/8/09 6/16/09 replaced GSM333859
599 POL-2_N2_L4_(CVMMS126R_8WG16_N2_L4) Lieb Lieb ChIP-chip chromatin Target=ama-1;AbName=8WG16;Array=86bp40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L4 larva 6/8/09 7/24/09 released , GSE22705, GSM562603, GSM562604, GSM562605, GSM562606, GSM562607
601 Pupae-snr1 ChIP-chip White White ChIP-chip chromatin Target=Snr1;AbName=AD:snr1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 6/9/09 10/15/09 released data/snr1_Pupae_analysis/MAT_snr1_Pupae.bed_dcc.gff GSM400394
602 pupae-brm ChIP-chip White White ChIP-chip chromatin Target=brm;AbName=AD:brm;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 6/9/09 10/16/09 released data/brm_pupae_analysis/MAT_brm_pupae.bed_dcc.gff GSM400395
603 Embryo 3-8h UBX7701 ChIP-chip White White ChIP-chip chromatin Target=Ubx;AbName=KW0:UBX-7701;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: extended germ band stage, embryonic stage 8-12 6/9/09 10/6/09 released data/UBX7701_E3-8h_analysis/MAT_UBX7701_E3-8h.bed_dcc.gff GSM400392
604 Embryo 0-12h ZFH1 ChIP-chip White White ChIP-chip chromatin Target=zfh1;AbName=KW0:ZFH1-7684;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 6/9/09 10/8/09 released data/ZFH1_E-0-12h_analysis/MAT_ZFH1_E-0-12h.bed_dcc.gff GSM400372
605 E-0-12h-INV7657 White White ChIP-chip chromatin Target=inv;AbName=KW0:INV-7657;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/INV7657_E-0-12h_analysis/MAT_INV7657_E-0-12h.bed_dcc.gff GSM400364
606 E-0-12h-dll White White ChIP-chip chromatin Target=Dll;AbName=dll;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/dll_E-0-12h_analysis/MAT_dll_E-0-12h.bed_dcc.gff GSM400202
607 E-0-12h-dCtBP7667 White White ChIP-chip chromatin Target=CtBP;AbName=dCtBP-7667;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/dCtBP7667_E-0-12h_analysis/MAT_dCtBP7667_E-0-12h.bed_dcc.gff GSM400192
608 Embryo 0-12h chinmo ChIP-chip White White ChIP-chip chromatin Target=chinmo;AbName=chinmo 70850;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 6/9/09 6/9/09 released data/chinmo_E-0-12h_analysis/chinmo_E-0-12h_dcc.gff GSM400173
609 E-0-12h-bks White White ChIP-chip chromatin Target=sbb;AbName=bks;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/bks_E-0-12h_analysis/MAT_bks_E-0-12h.bed_dcc.gff GSM400172
610 Embryo 7-24h gsbnpurif ChIP-chip White White ChIP-chip chromatin Target=gsb-n;AbName=FM:gsbn(purif);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-17 6/9/09 10/6/09 released data/gsbnpurif_E7-24h_analysis/MAT_gsbnpurif_E7-24h.bed_dcc.gff GSM402169
611 Embryo 7-24h end300 ChIP-chip White White ChIP-chip chromatin Target=en;AbName=en-d300;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-17 6/9/09 10/6/09 released data/end300_E7-24h_analysis/MAT_end300_E7-24h.bed_dcc.gff GSM400393
612 Embryo 3-8h UBX2 ChIP-chip White White ChIP-chip chromatin Target=Ubx;AbName=UBX2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: extended germ band stage, embryonic stage 8-12 6/9/09 10/6/09 released data/UBX2_E3-8h_analysis/MAT_UBX2_E3-8h.bed_dcc.gff GSM400391
613 Embryo 3-8h UBX1 ChIP-chip White White ChIP-chip chromatin Target=Ubx;AbName=UBX1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: extended germ band stage, embryonic stage 8-12 6/9/09 10/6/09 released data/UBX1_E3-8h_analysis/MAT_UBX1_E3-8h.bed_dcc.gff GSM400390
614 E0-12h-UBX7701 White White ChIP-chip chromatin Target=Ubx;AbName=KW0:UBX-7701;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/UBX7701_E0-12h_analysis/MAT_UBX7701_E0-12h.bed_dcc.gff GSM400371
615 E0-12h-TTK White White ChIP-chip chromatin Target=ttk;AbName=KW0:TTK-7691;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/TTK_E0-12h_analysis/MAT_TTK_E0-12h.bed_dcc.gff GSM400369
616 E0-12h-Stat92E White White ChIP-chip chromatin Target=Stat92E;AbName=Rabbit Stat92E (s1189-1);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/Stat92E_E0-12h_analysis/MAT_Stat92E_E0-12h.bed_dcc.gff GSM400368
617 E0-12h-RUN7659 White White ChIP-chip chromatin Target=run;AbName=KW0:RUN-7659;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/RUN7659_E0-12h_analysis/MAT_RUN7659_E0-12h.bed_dcc.gff GSM400367
618 E0-12h-KN White White ChIP-chip chromatin Target=kn;AbName=KW0:KN-7697;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/KN_E0-12h_analysis/MAT_KN_E0-12h.bed_dcc.gff GSM400366
619 Embryo 0-12h INV-GFP ChIP-chip White White ChIP-chip chromatin Target=inv;AbName=INV-GFP;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster INV-GFP whole organism embryo: embryonic stage 1-15 6/9/09 10/6/09 released data/INVGFP_E0-12h_analysis/MAT_INVGFP_E0-12h.bed_dcc.gff GSM400365
620 E0-12h-H3K36me3 White White ChIP-chip chromatin modification Target=H3K36Me3,His3:CG33806;AbName=H3K36Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/H3K36me3_E0-12h_analysis/MAT_H3K36me3_E0-12h.bed_dcc.gff GSM400361
621 E0-12h-H3K9me3 White White ChIP-chip chromatin modification Target=H3K9Me3,His3:CG33806;AbName=H3K9Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/H3K9me3_E0-12h_analysis/MAT_H3K9me3_E0-12h.bed_dcc.gff GSM400363
622 E0-12h-H3K4me3 White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/H3K4me3_E0-12h_analysis/MAT_H3K4me3_E0-12h.bed_dcc.gff GSM409075
623 E0-12h-Gro3 White White ChIP-chip chromatin Target=gro;AbName=KW0:Aviva_GRO3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/Gro3_E0-12h_analysis/MAT_Gro3_E0-12h.bed_dcc.gff GSM400360
624 E0-12h-FTZ-F1 White White ChIP-chip chromatin Target=ftz-f1;AbName=FTZ-F1-sc-27222;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/FTZ-F1_E0-12h_analysis/MAT_FTZ-F1_E0-12h.bed_dcc.gff GSM400204
625 E0-12h-ENserum White White ChIP-chip chromatin Target=en;AbName=EN(serum);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 6/9/09 released data/ENserum_E0-12h_analysis/MAT_ENserum_E0-12h.bed_dcc.gff GSM400203
626 E0-12h-D White White ChIP-chip chromatin Target=D;AbName=KW0-D;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/D_E0-12h_analysis/MAT_D_E0-12h.bed_dcc.gff GSM399633
627 E0-12h-CNC White White ChIP-chip chromatin Target=cnc;AbName=KW0-CNC;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/CNC_E0-12h_analysis/MAT_CNC_E0-12h.bed_dcc.gff GSM399627
628 E0-12h-bab1 White White ChIP-chip chromatin Target=bab1;AbName=bab-1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp embryo embryo: embryonic stage 6/9/09 10/6/09 released data/bab1_E0-12h_analysis/MAT_bab1_E0-12h.bed_dcc.gff GSM399407
630 DPY-27_N2_L4(JL00001_DPY27_N2_L4) Lieb Lieb ChIP-chip chromatin Target=dpy-27;AbName=JL00001_DPY27;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L4 larva 6/11/09 7/24/09 released , GSE22706, GSM562608, GSM562609, GSM562610, GSM562611
633 Dm Kc167 polyA 002-004 PE RNA-Seq Bowtie Celniker Graveley RNA-seq RNA profiling Drosophila melanogaster Kc167 6/15/09 7/9/09 released GSM390059
634 small RNA N2 embryos RNA-seq Waterston Slack RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism embryo: embryo 6/15/09 6/23/09 released GSM336052
635 small RNA N2 mid-L1 RNA-seq Waterston Slack RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: L1 larva 6/15/09 6/23/09 released GSM336055
636 small RNA N2 mid-L2 RNA-seq Waterston Slack RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: L2 larva 6/15/09 6/23/09 released GSM336056
637 small RNA N2 mid-L3 RNA-seq Waterston Slack RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: L3 larva 6/15/09 6/23/09 released GSM336058
638 small RNA N2 mid-L4 RNA-seq Waterston Slack RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: L4 larva 6/15/09 6/23/09 released GSM336059
639 small RNA N2 young adult RNA-seq Waterston Slack RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 6/15/09 6/23/09 released GSM336060
640 small RNA him-8 males RNA-seq Waterston Slack RNA-seq RNA profiling Caenorhabditis elegans CB4689 whole organism adult: adult male 6/15/09 6/23/09 released GSM336086
642 deprecated by 2351 mid-L2 20dC 14hrs post-L1 RNASeq Waterston Waterston RNA-seq RNA profiling Version=2 Caenorhabditis elegans N2 whole organism larva: L2 larva 9/17/09 11/19/09 replaced
643 E-20-24h-CBP White White ChIP-chip chromatin Target=nejire;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 6/16/09 10/13/09 released E20-24h-CBP_agilent_dmel3_merged_dcc.gff
644 DPY-28_N2_MXEMB_(JL00012_DPY28_N2_MXEMB) Lieb Lieb ChIP-chip chromatin Target=dpy-28;AbName=JL00012_DPY28;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 6/16/09 8/31/09 released , GSE22708, GSM562684, GSM562685
645 SDC-2_N2_MXEMB_(SDQ3146_SDC2_N2_MXEMB) Lieb Lieb ChIP-chip chromatin Target=sdc-2;AbName=SDQ3146_SDC2, SDQ3148_SDC2;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 6/17/09 8/4/09 released , GSE22709, GSM562686, GSM562687, GSM562688
650 Dm S2-DRSC polyA 014-016 PE RNA-Seq Bowtie Celniker Graveley RNA-seq RNA profiling Version=2 Drosophila melanogaster S2-DRSC 6/22/09 7/15/09 released GSM390063
651 Dm ML-DmBG3-c2 polyA 122-124 PE RNA-Seq Bowtie Celniker Graveley RNA-seq RNA profiling Drosophila melanogaster ML-DmBG3-c2 6/22/09 7/15/09 released GSM390065
652 Dm CME_W1_Cl.8+ polyA 060-062 PE RNA-Seq Bowtie Celniker Graveley RNA-seq RNA profiling Drosophila melanogaster CME W1 Cl.8+ 6/22/09 7/15/09 released GSM390061
654 embryo A-class motor neurons tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC300 DA neuron, SAB, I5 embryo: embryo 6/22/09 11/4/09 released emb-A-class_tars_maxgap30_minrun100_thresh8.81.gff3 GSE23278, GSM571513, GSM571513, GSM571514, GSM571515
655 L3-L4 dopaminergic neuron tiling array Waterston Miller tiling array: RNA transcription Target=dat-1;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC1700 dopaminergic neuron larva: L3-L4 molt 6/22/09 11/19/09 released L3-L4-dop_tars_maxgap30_minrun100_thresh10.14.gff3 GSE23279, GSM571516, GSM571516, GSM571517, GSM571518
656 Young Adult reference (mockIP) tiling array Waterston Miller tiling array: RNA transcription Target=FLAG;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 organism larva: newly molted young adult hermaphrodite 6/22/09 11/19/09 released YA-ref_tars_maxgap30_minrun100_thresh9.66.gff3 GSE23280, GSM571519, GSM571519, GSM571520, GSM571521
657 L2 coelomocytes tiling array Waterston Miller tiling array: RNA transcription Target=unc-122;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC1668 coelomocyte larva: L2 larva 6/22/09 11/19/09 released L2-coelomocytes_tars_maxgap30_minrun100_thresh9.13.gff3 GSE23281, GSM571522, GSM571522, GSM571523, GSM571524
658 L2 glutamate receptor expressing neurons tiling array Waterston Miller tiling array: RNA transcription Target=glr-1;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC1842 RMD, SMD, URY, AIB, AVA, AVB, AVD, AVE, AVG, PVC, PVQ, RIM larva: L2 larva 6/22/09 11/19/09 released L2-glr_tars_maxgap30_minrun100_thresh9.98.gff3 GSE23282, GSM571525, GSM571525, GSM571526, GSM571527
659 L3-L4 reference (mockIP) tiling array Waterston Miller tiling array: RNA transcription Target=FLAG;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans N2 organism larva: L3-L4 molt 6/22/09 11/19/09 released L3-L4-reference_tars_maxgap30_minrun100_thresh8.52.gff3 GSE23283, GSM571528, GSM571528, GSM571529, GSM571530
660 Young Adult Cephalic sheath (CEPsh) tiling array Waterston Miller tiling array: RNA transcription Target=hlh-17;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans OS3991 CEPshDR, CEPshVR, CEPshVL larva: newly molted young adult hermaphrodite 6/22/09 11/19/09 released YA-CEPsh_tars_maxgap30_minrun100_thresh8.38.gff3 GSE23284, GSM571531, GSM571531, GSM571532, GSM571533
661 embryo germline precursor cells tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans SS747 germ line precursor cell embryo: embryo 6/22/09 11/4/09 released emb-GLP_tars_maxgap30_minrun100_thresh7.83.gff3 GSE23285, GSM571534, GSM571534, GSM571535, GSM571536
662 embryo hypodermal cells tiling array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans DM8001 hypodermal cell embryo: embryo 6/22/09 11/4/09 released emb-hypodermis_tars_maxgap30_minrun100_thresh7.75.gff3 GSE23286, GSM571537, GSM571537, GSM571538, GSM571539
663 Pol_II_CTD_N2_EEMB_(ABAB817_8WG16_N2_EEMB) Lieb Strome ChIP-chip chromatin Target=ama-1;AbName=ABAB817_8WG16;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 6/26/09 2/17/10 released , GSE22710, GSM562689, GSM562690, GSM562691
666 Ellen's Test Project Stein Stein 3/5/10 reviewing
668 Kc167 Replication Timing MacAlpine MacAlpine tiling array: DNA replication timing Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster Kc167 6/30/09 6/30/09 released GSE17279, GSM432694, GSM432695, GSM432696
669 S2 Replication Timing MacAlpine MacAlpine tiling array: DNA replication timing Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster S2-DRSC 6/30/09 6/30/09 released GSE17280, GSM432697, GSM432698, GSM432699
670 Bg3 Replication Timing MacAlpine MacAlpine tiling array: DNA replication timing Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster ML-DmBG3-c2 6/30/09 6/30/09 released GSE17281, GSM432701, GSM432702, GSM432703
674 pre-RC complexes ORC Kc MacAlpine MacAlpine ChIP-chip replication factors Target=Orc2;AbName=dORC2;Array=112bp;ArrayPlatform=Agilent Drosophila melanogaster Kc167 6/30/09 6/30/09 released orc_meta_peaks.gff GSE17282, GSM432704, GSM432705, GSM432706, GSM432707, GSM432708, GSM432709, GSM432710, GSM432711
675 pre-RC complexes MCM_cycE Kc MacAlpine MacAlpine ChIP-chip replication factors Target=MCM2-7 complex;AbName=Pan MCM2-7 body;Array=112bp;ArrayPlatform=Agilent Drosophila melanogaster Kc167 6/30/09 6/30/09 released mcm_meta_peaks.gff GSE17283, GSM432712, GSM432713, GSM432714, GSM432715, GSM432716, GSM432717, GSM432718, GSM432719
691 Histone_H3K9me3_N2_EEMB_1_(UP07442_H3K9ME3_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 7/6/09 2/17/10 released , GSE22711, GSM562692, GSM562693, GSM562694
693 DPY27_11DH(I;X)_MXEMB(JL00001_DPY27_11DH_MXEMB) Lieb Lieb ChIP-chip chromatin Target=dpy-27;AbName=JL00001_DPY27;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans YPT40 whole organism embryo: proliferating embryo 7/8/09 2/17/10 released , GSE22712, GSM562695, GSM562696
695 DPY27_YPT41(II;X)_MXEMB(JL00001_DPY27_YPT41_MXEMB) Lieb Lieb ChIP-chip chromatin Target=dpy-27;AbName=JL00001_DPY27;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans YPT41 whole organism embryo: proliferating embryo 7/8/09 2/17/10 released , GSE22713, GSM562697, GSM562698
696 DPY27_YPT47(V;X)_MXEMB(JL00001_DPY27_YPT47_MXEMB) Lieb Lieb ChIP-chip chromatin Target=dpy-27;AbName=JL00001_DPY27;Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans YPT47 whole organism embryo: proliferating embryo 7/9/09 8/4/09 released , GSE22714, GSM562699, GSM562700, GSM562701
701 SDC3_YPT47(V;X)_MXEMB(JL00002_SDC3_YPT47_MXEMB) Lieb Lieb ChIP-chip chromatin Target=sdc-3;AbName=JL00002_SDC3;Array=86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans YPT47 whole organism embryo: proliferating embryo 7/10/09 8/4/09 released , GSE22715, GSM562702, GSM562703
709 Kc167 Replication Origins MacAlpine MacAlpine tiling array: DNA origins of replication Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster Kc167 7/13/09 7/13/09 released early_origins/Kc/MA2C_Output/Kc_early_origins_peaks.gff GSE17285, GSM432725, GSM432726, GSM432727, GSM432728
710 S2 Replication Origins MacAlpine MacAlpine tiling array: DNA origins of replication Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster S2-DRSC 7/13/09 7/13/09 released early_origins/S2/MA2C_Output/S2_early_origins_peaks.gff GSE17286, GSM432729, GSM432730, GSM432731
711 Bg3 Replication Origins MacAlpine MacAlpine tiling array: DNA origins of replication Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster ML-DmBG3-c2 7/13/09 7/13/09 released early_origins/Bg3/MA2C_Output/Bg3_early_origins_peaks.gff GSE17287, GSM432732, GSM432733, GSM432734
712 Dm Dm adult whole_fly 057 RNASeq Bowtie Celniker Brent RNA-seq transcription Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 7/14/09 7/16/09 released GSM339263
713 Dm_ML_BG3-c2_polyApRNA_p200_485-486-487_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 7/14/09 8/3/09 released Dro2_AS_MLDmBG3-c2_PolyA+_899.gff GSE23225, GSM571111, GSM571111, GSM571112, GSM571113
715 Dm_S2-DRSC_nuclearRNA_p200_482-483-484_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 7/14/09 8/3/09 released Dro2_AS_S2-DRSC_nuclear_898.gff GSE23226, GSM571114, GSM571114, GSM571115, GSM571116
716 Dm_Bg3-c2_nuclearRNA_p200_488_489_490_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 7/14/09 8/3/09 released Dro2_AS_MLDmBG3-c2_nuclear_926.gff GSE23227, GSM571117, GSM571117, GSM571118, GSM571119
717 Dm_C1.8_polyApRNA_p200_491_492_493_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 7/14/09 8/3/09 released Dro2_AS_C1.8_PolyA+_927.gff GSE23228, GSM571120, GSM571120, GSM571121, GSM571122
718 Dm_S2-DRSC_polyApRNA_p200_479-480-481_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 7/15/09 8/3/09 released Dro2_AS_S2-DRSC_PolyA+_897.gff GSE23229, GSM571123, GSM571123, GSM571124, GSM571125
720 deprecated by 2383 CGH Salivary Y cn bw sp MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp larval salivary gland embryo: cleavage stage, early extended germ band stage, embryonic stage, pre-blastoderm stage, embryonic stage 1-9 7/17/09 7/17/09 replaced salivary_244_trough_peaks.gff GSE17288, GSM432735
725 CGH S2-DRSC MacAlpine MacAlpine tiling array: DNA chromatin modification Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster S2-DRSC 7/20/09 7/20/09 released GSE17292, GSM432743, GSM432744
727 deprecated by 2384 CGH Follicle OregonR-mod MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster Oregon-R-modENCODE oocyte associated follicle cell embryo: cleavage stage, early extended germ band stage, embryonic stage, pre-blastoderm stage, embryonic stage 1-9 7/20/09 7/20/09 replaced follicle_244_peaks.gff
728 deprecated by 2385 CGH Follicle Cells Orr-Weaver MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=616;ArrayPlatform=Agilent Drosophila melanogaster Oregon-R_Orr-Weaver oocyte associated follicle cell embryo: cleavage stage, early extended germ band stage, embryonic stage, pre-blastoderm stage, embryonic stage 1-9 7/20/09 7/20/09 replaced follicle_188_peaks.gff
729 deprecated by 2386 CGH Salivary OregonR-Orr-Weaver MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=616;ArrayPlatform=Agilent Drosophila melanogaster Oregon-R_Orr-Weaver larval salivary gland embryo: cleavage stage, early extended germ band stage, embryonic stage, pre-blastoderm stage, embryonic stage 1-9 7/20/09 7/20/09 replaced salivary_188_trough_peaks.gff
734 Snyder_CEH-14_GFP_L2 Snyder Snyder ChIP-seq chromatin Target=eGFP;AbName=eGFP Caenorhabditis elegans OP73 whole organism larva: L2 larva 7/20/09 11/28/09 released Snyder_CEH-14_GFP_L2_combined_peaks.GFF3 GSM435293
737 Dm Canton-S Adult Female Head smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S adult head adult: adult stage 6/13/08 6/13/08 released GSM240749
738 Kc167 smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Kc167 6/13/08 6/13/08 released GSM272653
739 Dm Canton-S Adult Male Body smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S abdomen, thorax adult: adult stage 6/13/08 3/31/09 released GSM286602
740 Dm Canton-S Embryo 2-6h smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 6/13/08 6/12/09 released GSM286605
741 S2/Kc167 + Ecdysone exposure smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster mixed: S2-DRSC, Kc167 9/17/09 2/15/10 released GSM272651
742 Dm Canton-S Imaginal Disk smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S imaginal disc adult: adult stage 9/17/09 12/23/09 released GSM275691
743 Dm Canton-S Adult Female Body smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S abdomen, thorax adult: adult stage 6/13/08 3/2/09 released GSM286603
744 superseded by 2675 MB7 gene models Celniker Brent Computational annotation gene model Drosophila melanogaster 8/3/09 8/20/09 replaced models/MB07.gff3, transcript_clusters/dm3_run11.gff3
745 Dm Canton-S Embryo 0-1h smallRNA RNA-Seq (2) Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 9/17/09 10/15/10 released GSM286613
746 S2-DRSC smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster S2-GMR 6/13/08 3/9/09 released GSM272652
747 Dm Canton-S Adult Male Head smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S adult head adult: adult stage 9/19/08 6/16/09 released GSM286601
748 Dm Canton-S 3rd Instar Larvae smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism larva: third instar larval stage 10/9/08 3/2/09 released GSM322208
749 Dm Canton-S 3rd Instar Larvae smallRNA RNA-Seq (2) Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism larva: third instar larval stage 10/9/08 3/31/09 released GSM322245
750 Dm Canton-S Adult Female Head smallRNA RNA-Seq (2) Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S adult head adult: adult stage 10/9/08 4/6/09 released GSM322533
751 Dm Canton-S Adult Male Head smallRNA RNA-Seq (2) Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S adult head adult: adult stage 10/9/08 4/6/09 released GSM322543
752 Dm Canton-S Embryo 2-6h smallRNA RNA-Seq (2) Lai Lai RNA-seq RNA profiling Version=2 Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 6/13/08 4/3/09 released GSM286606
753 Dm Canton-S Embryo 6-10h smallRNA RNA-Seq (2) Lai Lai RNA-seq RNA profiling Version=3 Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 11-13 6/13/08 4/8/09 released GSM286611
754 Dm Canton-S Embryo 6-10h smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=3 Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 11-13 6/13/08 4/3/09 released GSM286607
755 Dm Canton-S Embryo 0-1h smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Version=3 Drosophila melanogaster Canton-S whole organism embryo: embryonic stage 6/13/08 4/6/09 released GSM286604
756 deprecated by 773 Lai_GSM280082 Lai Lai RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp ovary adult: adult stage 3/6/09 9/29/09 replaced
757 Dm Canton-S Pupae 2-4d smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism pupae: pharate adult stage P10, pharate adult stage P11, pharate adult stage P12, pharate adult stage P13, pharate adult stage P14, pharate adult stage P15, pharate adult stage P8, pharate adult stage P9 10/9/08 3/24/09 released GSM322219
758 Dm Canton-S Pupae 2-4d smallRNA RNA-Seq (2) Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism pupae: pharate adult stage P10, pharate adult stage P11, pharate adult stage P12, pharate adult stage P13, pharate adult stage P14, pharate adult stage P15, pharate adult stage P8, pharate adult stage P9 10/9/08 4/3/09 released GSM322338
762 Dm Canton-S 1st Instar Larvae smallRNA RNA-Seq Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism larva: first instar larval stage 7/2/09 7/2/09 released GSM360256
763 Dm_y[1]cn[1] bw[1] sp[1]_embryo_6-8h_TotalRNA_p200_230-232_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix;Version=2 Drosophila melanogaster y; cn bw sp whole organism embryo: extended germ band stage, late extended germ band stage, embryonic stage 11-12 8/4/08 3/2/09 released Dro2_AS_Dm_emb_8h_760.gff GSE23230, GSM571126, GSM571126, GSM571127
764 E4-8_H3K9Me3 White White ChIP-chip chromatin modification Target=H3K9Me3,His3:CG33806;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 3/6/09 5/4/09 released E4-8_K9Me3.dcc.gff GSM384723
765 Pupae_H3K9Me3 White White ChIP-chip chromatin modification Target=H3K9Me3,His3:CG33806;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 5/4/09 released Pupae_K9Me3.dcc.gff
767 E12-16_H3K27Me3 White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 3/8/09 4/8/09 released E12-16_K27Me3.dcc.gff GSM384787
768 E4-8_H3K27Me3 White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 2/2/09 4/8/09 released E4-8_K27Me3.dcc.gff GSM384778
769 E0-12_dCTCF C-term ChIP-chip White White ChIP-chip chromatin Target=CTCF;AbName=CTCF-C;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 9/4/09 1/27/09 released CTCF_C_1fdr.gff GSM409069
770 E0-12_dCTCF N-term ChIP-chip White White ChIP-chip chromatin Target=CTCF;AbName=CTCF-N;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 9/4/09 1/27/09 released CTCF_N_1fdr.gff GSM409070
771 E0-4_H3K4me3 new White White ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 8/11/08 8/11/08 released E0-4_H3K4Me3_merged_dcc.gff
772 Dm Oregon-R Adult Male Testis smallRNA RNA-Seq Lai Hannon RNA-seq RNA profiling Version=2 Drosophila melanogaster Oregon-R-modENCODE testis adult: adult stage 7/2/08 9/29/09 released GSM280085
773 Dm y[1]; cn[1] bw[1] sp[1] Ovary smallRNA RNA-Seq Lai Hannon RNA-seq RNA profiling Version=2 Drosophila melanogaster y; cn bw sp ovary adult: adult stage 11/8/08 9/29/09 released GSM280082
774 Dm Loqs[f00791] Ovary smallRNA RNA-Seq Lai Hannon RNA-seq RNA profiling Drosophila melanogaster w[1118]; PBac{w[+mC]=WH}loqs[f00791]/CyO ovary adult: adult stage 11/8/08 9/29/09 released GSM280084
777 E0-4_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/14/09 released E0-4_H3K4Me1_input__tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401409
778 E4-8_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/12/09 released E4-8_H3K4Me1__input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401406
779 E8-12_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/15/09 released E8-12_H3K4Me1_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432593
780 E12-16_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 10/7/09 released E12-16_H3K4Me1_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432591
781 E16-20_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/12/09 released E16-20_H3K4Me1_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401403
782 E20-24_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/14/09 released E20-24_H3K4Me1_density.bed.gff3 GSM439464
783 L1_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/4/09 10/12/09 released L1_H3K4Me1_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432588
784 L2_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 10/12/09 released L2_H3K4Me1_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401421
785 L3_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 10/12/09 released L3_H3K4Me1_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401418
786 Pupae_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 10/12/09 released Pupae_H3K4Me1_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401415
787 AdultFemale_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/13/09 released AdultFemale_H3K4Me1_density.bed.gff3 GSM439465
788 AdultMale_H3K4Me1_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1 Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/12/09 released AdultMale_H3K4Me1_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401411
789 E0-4_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/12/09 released E0-4_H3K4Me3_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM400656
790 E4-8_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/13/09 released E4-8_H3K4Me3_input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM400674
791 E8-12_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/15/09 released E8-12_H3K4Me3_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432585
792 E12-16_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 10/13/09 released E12-16_H3K4Me3_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432580
793 E16-20_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/13/09 released E16-20_H3K4Me3_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM400658
794 E20-24_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/13/09 released E20-24_H3K4Me3_input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM400672
795 L1_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/4/09 10/13/09 released L1_H3K4Me3_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM400662
796 L2_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 10/13/09 released L2_H3K4Me3_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM400668
797 L3_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 10/13/09 released L3_H3K4Me3_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM400660
798 Pupae_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 10/13/09 released Pupae_H3K4Me3_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM400664
799 AdultFemale_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/7/09 released AdultFemale_H3K4Me3_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM400670
800 AdultMale_H3K4Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K4Me3;AbName=H3K4Me3 Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/7/09 released AdultMale_H3K4Me3_Input_tag36_mfold4_250_peaks.bed.gff3 GSM400666
801 E0-4_H3K9Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K9Me3;AbName=H3K9Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/13/09 released E0-4_H3K9Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439457
802 E4-8_H3K9Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K9Me3;AbName=H3K9Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/13/09 released E4-8_H3K9Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439456
803 E8-12_H3K9Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K9Me3;AbName=H3K9Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/15/09 released E8-12_H3K9Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439455
804 E12-16_H3K9Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K9Me3;AbName=H3K9Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 10/13/09 released E12-16_H3K9Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439454
805 E16-20_H3K9Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K9Me3;AbName=H3K9Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/13/09 released E16-20_H3K9Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439453
806 E20-24_H3K9Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K9Me3;AbName=H3K9Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/13/09 released E20-24_H3K9Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439452
807 L1_H3K9Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K9Me3;AbName=H3K9Me3 Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/4/09 10/13/09 released L1_H3K9Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439451
808 L2_H3K9Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K9Me3;AbName=H3K9Me3 Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 10/13/09 released L2_H3K9Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439450
809 Pupae_H3K9Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K9Me3;AbName=H3K9Me3 Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 10/13/09 released Pupae_H3K9Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439449
810 E0-4_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/14/09 released E0-4_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439448
811 E4-8_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/13/09 released E4-8_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439447
812 E8-12_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/15/09 released E8-12_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439446
813 E12-16_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 10/14/09 released E12-16_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439445
814 E16-20_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/13/09 released E16-20_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439444
815 E20-24_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/14/09 released E20-24_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439443
816 L1_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/4/09 10/13/09 released L1_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439442
817 L2_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 10/15/09 released L2_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439441
818 L3_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 10/13/09 released L3_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439440
819 Pupae_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 10/13/09 released Pupae_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439439
820 AdultMale_H3K27Me3_chip-seq White White ChIP-seq chromatin modification Target=H3K27Me3;AbName=H3K27Me3 Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/12/09 released AdultMale_H3K27Me3.merged.bed.wig.final.bed.trim.bed.significant.bed.gff3 GSM439438
821 E0-4_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/12/09 released E0-4_H3K9Ac_input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401408
822 E4-8_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/13/09 released E4-8_H3K9Ac_input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401405
823 E8-12_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/15/09 released E8-12_H3K9Ac_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432592
824 E12-16_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 10/14/09 released E12-16_H3K9Ac_density.bed.gff3 GSM439458
825 E16-20_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/13/09 released E16-20_H3K9Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401402
826 E20-24_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/13/09 released E20-24_H3K9Ac_input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401424
827 L1_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/4/09 10/13/09 released L1_H3K9Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401422
828 L2_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 10/13/09 released L2_H3K9Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401420
829 L3_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 10/13/09 released L3_H3K9Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401417
830 Pupae_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 10/13/09 released Pupae_H3K9Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401414
831 AdultFemale_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/13/09 released AdultFemale_H3K9Ac_density.bed.gff3 GSM439459
832 AdultMale_H3K9Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K9Ac;AbName=H3K9Ac Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/12/09 released AdultMale_H3K9Ac_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432579
834 E0-4_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 9/4/09 released E0-4_H3K27Ac_input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401407
835 E4-8_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 9/4/09 released E4-8_H3K27Ac_input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401404
836 E8-12_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/14/09 released E8-12_H3K27Ac_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432583
837 E12-16_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 10/13/09 released E12-16_H3K27Ac_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432582
838 E16-20_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/12/09 released E16-20_H3K27Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401401
839 E20-24_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/12/09 released E20-24_H3K27Ac_input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401423
840 L1_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/4/09 10/13/09 released L1_H3K27Ac_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432581
841 L2_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 9/4/09 released L2_H3K27Acs6_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401419
842 L3_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 10/13/09 released L3_H3K27Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401416
843 Pupae_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 10/13/09 released Pupae_H3K27Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401413
844 AdultFemale_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/15/09 released AdultFemale_H3K27Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401412
845 AdultMale_H3K27Ac_chip-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/12/09 released AdultMale_H3K27Ac_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401410
846 E4-8_PolII_chip-seq White White ChIP-seq chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/13/09 released E4-8_PolII_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432578
847 E8-12_PolII_chip-seq White White ChIP-seq chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/12/09 released E8-12_PolII_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432594
848 E12-16_PolII_chip-seq White White ChIP-seq chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 10/14/09 released E12-16_PolII_density.bed.gff3 GSM439461
849 E16-20_Pol_II_chip-seq White White ChIP-seq chromatin Target=nejire;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/15/09 released E16-20_PolII_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432584
850 E20-24_PolII_chip-seq White White ChIP-seq chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/14/09 released E20-24_PolII_density.bed.gff3 GSM439460
851 L1_PolII_chip-seq White White ChIP-seq chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301 Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/4/09 9/4/09 released L1_PolII_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432589
852 L3_PolII_chip-seq White White ChIP-seq chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301 Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 9/4/09 released L3_PolII_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432587
853 Pupae_PolII_chip-seq White White ChIP-seq chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301 Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 9/4/09 released Pupae_PolII_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432586
854 E0-4_CBP_chip-seq White White ChIP-seq chromatin Target=nejire;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/13/09 released E0-4_CBP_density.bed.gff3 GSM439463
855 E4-8_CBP_chip-seq White White ChIP-seq chromatin Target=nej;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/15/09 released E4-8_CBP_peaks.bed.gff3 GSM408988
856 E12-16_CBP_chip-seq White White ChIP-seq chromatin Target=nejire;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 9/4/09 released E12-16_CBP_peaks.bed.gff3 GSM408986
857 E16-20_CBP_chip-seq White White ChIP-seq chromatin Target=nejire;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/15/09 released E16-20_CBP_eland_result_filtered.txt.Pf0.30000.txt.final.txt.bed.gff3 GSM432584
858 E20-24_CBP_chip-seq White White ChIP-seq chromatin Target=nejire;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/13/09 released E20-24_CBP_density.bed.gff3 GSM439462
859 L1_CBP_chip-seq White White ChIP-seq chromatin Target=nej;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/4/09 10/15/09 released L1_CBP_peaks.bed.gff3 GSM408990
860 L3_CBP_chip-seq White White ChIP-seq chromatin Target=nejire;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 9/4/09 released L3_CBP_peaks.bed.gff3 GSM408992
861 Pupae_CBP_chip-seq White White ChIP-seq chromatin Target=nejire;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 10/13/09 released Pupae_CBP_peaks.bed.gff3 GSM408994
862 AdultFemale_CBP_chip-seq White White ChIP-seq chromatin Target=nejire;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 9/4/09 released AdultFemale_CBP_peaks.bed.gff3 GSM408982
863 AdultMale_CBP_chip-seq White White ChIP-seq chromatin Target=nejire;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/12/09 released AdultMale_CBP_peaks.bed.gff3 GSM408984
864 E8-12_H3K4Me1 ChIP-chip White White ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/13/09 released E8-12_H3K4Me1_agilent_dmel3_merged_dcc.gff
865 E8-12_H3K4Me3 ChIP-chip White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/13/09 released E8-12_H3K4Me3_agilent_dmel3_merged_dcc.gff
866 E8-12_H3K9Me3 ChIP-chip White White ChIP-chip chromatin modification Target=H3K9Me3,His3:CG33806;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/15/09 released E8-12_H3K9Me3_agilent_dmel3_merged_dcc.gff
867 E0-4_H3K27Me3 ChIP-chip White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/15/09 released E0-4_H3K27Me3_agilent_dmel3_merged_dcc.gff
868 E8-12_H3K27Me3 ChIP-chip White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/13/09 released E8-12_H3K27Me3_agilent_dmel3_merged_dcc.gff
869 AdultMale_H3K27Me3 ChIP-chip Set2 White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/13/09 released AdultMale_H3K27Me3-Set2_agilent_dmel3_merged_dcc.gff
870 E8-12_H3K9Ac ChIP-chip White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/15/09 released E8-12_H3K9Ac_agilent_dmel3_merged_dcc.gff
871 AdultMale_H3K9Ac ChIP-chip set2 White White ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/15/09 released AdultMale_H3K9Ac-Set2_merged_dcc.gff
872 E8-12_H3K27Ac ChIP-chip White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/15/09 released E8-12_H3K27Ac_agilent_dmel3_merged_dcc.gff
873 AdultMale_H3K27Ac ChIP-chip White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/13/09 released AdultMale_H3K27Ac_agilent_dmel3_merged_dcc.gff
874 AdultMale_H3K27Ac ChIP-chip Set2 White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/15/09 released AdultMale_H3K27Ac-Set2_agilent_dmel3_merged_dcc.gff
875 E0-4_CBP ChIP-chip White White ChIP-chip chromatin Target=nej;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/15/09 released E0-4_CBP_agilent_dmel3_merged_dcc.gff
876 E4-8_CBP ChIP-chip White White ChIP-chip chromatin Target=nejire;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster whole organism embryo: embryonic stage 9-12 9/4/09 10/13/09 released E4-8_CBP_agilent_dmel3_merged_dcc.gff
877 E16-20_CBP ChIP-chip White White ChIP-chip chromatin Target=nej;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/14/09 released E16-20_CBP_agilent_dmel3_merged_dcc.gff
878 L1_CBP ChIP-chip White White ChIP-chip chromatin Target=nej;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/4/09 10/15/09 released L1_CBP_dcc.gff
879 L3_CBP ChIP-chip White White ChIP-chip chromatin Target=nej;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 10/15/09 released L3_CBP_dcc.gff
880 Pupae_CBP ChIP-chip White White ChIP-chip chromatin Target=nej;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 10/15/09 released Pupae_CBP_agilent_dmel3_merged_dcc.gff
881 AdultFemale_CBP ChIP-chip White White ChIP-chip chromatin Target=nej;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/15/09 released AdultFemale_CBP_agilent_dmel3_merged_dcc.gff
882 AdultMale_CBP ChIP-chip White White ChIP-chip chromatin Target=nej;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/15/09 released AdultMale_CBP_agilent_dmel3_merged_dcc.gff
883 L2_PolII ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 10/13/09 released L2_PolII_agilent_dmel3_merged_dcc.gff
884 L3_PolII ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 10/13/09 released L3_PolII_dcc.gff
885 E0-4_8wg16 ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/13/09 released E0-4_8wg16_agilent_dmel3_merged_dcc.gff
886 E4-8 PolII set2 (8wg16) ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/15/09 released E4-8_8wg16_agilent_dmel3_merged_dcc.gff
887 E4-8_8wg16 ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/15/09 released E4-8_8wg16_agilent_dmel3_merged_dcc.gff
888 E16-20_8wg16 ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/4/09 10/13/09 released E16-20_8wg16_dcc.gff
889 L3_8wg16 ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/4/09 9/4/09 released L3_8wg16_agilent_dmel3_merged_dcc.gff
890 Pupae_8wg16 ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/4/09 10/16/09 released Pupae_PolII-Set2_agilent_dmel3_merged_dcc.gff GSM418514
891 AdultFemale_8wg16 ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/4/09 10/13/09 released AdultFemale_8wg16_agilent_dmel3_merged_dcc.gff
895 L2_H3K27Ac (s2) ChIP-seq White White ChIP-seq chromatin modification Target=H3K27Ac;AbName=H3K27Ac Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 10/16/09 released L2_H3K27Acs2_Input_tag36_mfold4_250_peaks_1fdr_filtered.bed.gff3 GSM401419
896 3'UTR 454 sequencing pilot - Level 1 Piano Piano RACE raw sequences Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, embryo 9/4/09 11/4/09 released GSM443959
897 MRG-1_N2_EEMB_(SDQ0790_MRG1_N2_EEMB) Lieb Strome ChIP-chip chromatin Target=mrg-1;AbName=SDQ0790_MRG1;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/7/09 11/27/09 released , GSE22716, GSM562704, GSM562705, GSM562706
898 E0-8_Kr-D2 ChIP-chip White White ChIP-chip chromatin Target=Kr;AbName=KW3-Kr-D2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-12 9/4/09 10/16/09 released MAT_Kr-D2_E-0-8h.bed_dcc.gff
899 E0-12_PolII White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 9/4/09 10/15/09 released MAT_PolII_E-0-12h.bed_dcc.gff GSM409077
900 E0-4_CBP White White ChIP-chip chromatin Target=nej;AbName=CBP_body;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/15/09 released MAT_rbCBP_E-0-4h.bed_dcc.gff
901 E0-12_Su(Hw)PG White White ChIP-chip chromatin Target=su(Hw);AbName=Su(Hw)-PG;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 9/4/09 10/15/09 released MAT_Su(Hw)PG_E-0-12h.bed_dcc.gff
902 E0-4_GFP_7T ChIP-chip White White ChIP-chip chromatin Target=cad;AbName=odg-GFP;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster 7T-CAD whole organism embryo: embryonic stage 1-9 9/4/09 10/16/09 released MAT_GFP_7T-E-0-4h.bed_dcc.gff
903 E8-12_CBP_Set2 White White ChIP-chip chromatin Target=nejire;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/15/09 released E8-12_CBP_merged_dcc.gff
904 L2_8wg16 ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 9/4/09 released L2_PolII-Set2_agilent_dmel3_merged_dcc.gff
905 E12-16_CBP ChIP-chip White White ChIP-chip chromatin Target=nej;AbName=CBP_body;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 10/16/09 released E12-16_CBP_agilent_dmel3_merged_dcc.gff
906 E12-16_Pol_II ChIP-chip White White ChIP-chip chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/4/09 10/16/09 released E12-16_PolII_agilent_dmel3_merged_dcc.gff
908 Kc167_CTCF-N ChIP-chip White White ChIP-chip chromatin Target=CTCF;AbName=CTCF-N;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 9/4/09 10/16/09 released MAT_CTCF-N_KcCells.bed_dcc.gff GSM409079
909 Histone_H3K36me2_N2_EEMB_(HK00012_H3K36ME22C3_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/7/09 11/27/09 released , GSE22717, GSM562707, GSM562708
910 RNAi CG8144 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=ps Drosophila melanogaster S2-DRSC 9/4/09 10/8/09 approved GSM461179
911 MES-4_N2_EEMB_(SDQ0791_MES4_N2_EEMB) Lieb Strome ChIP-chip chromatin Target=mes-4;AbName=SDQ0791_MES4;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/7/09 11/27/09 released , GSE22718, GSM562709, GSM562710, GSM562711
912 H3K4me3_Kc167 ChIP-chip White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 9/4/09 10/16/09 released MAT_H3K4me3_KcCells.bed_dcc.gff GSM409458
913 CTCF-N_S2 ChIP-chip White White ChIP-chip chromatin Target=CTCF;AbName=CTCF-N;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/16/09 released MAT_CTCF-N_S2Cells.bed_dcc.gff
914 H3K4me3_S2 ChIP-chip White White ChIP-chip chromatin modification Target=H3K4Me3,His3:CG33806;AbName=H3K4Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/16/09 released MAT_H3K4me3_S2cells.bed_dcc.gff GSM409457
918 TotalRNA_E0-12h White White tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism mixed: adult stage, embryonic stage 1-15 9/4/09 10/17/09 released GSM409080_Total_RNA_Tripli_pvalue_Dm_BDGPv5.bed.gff GSM409080
919 E0-12_H3K27me3 ChIP-chip White White ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 9/4/09 10/15/09 released GSM409076_H3K27me3_nn_100bp_hmmseg.bed.new.bed.gff GSM409076
921 BEAF-70.BG3 Karpen Pirrotta ChIP-chip chromatin Target=BEAF-32;AbName=BEAF-70;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 9/4/09 10/12/09 released repset.4620429.smoothedM.clusters.gff3 GSE20811, GSM520991, GSM520991, GSM520992, GSM520993, GSM520994
922 BEAF-70.S2 Karpen Pirrotta ChIP-chip chromatin Target=BEAF-32;AbName=BEAF-70;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/12/09 released repset.4620888.smoothedM.clusters.gff3 GSE20812, GSM520995, GSM520995, GSM520996, GSM520997, GSM520998
923 BRE1_Q2539.S2 Karpen Kuroda ChIP-chip chromatin Target=Bre1;AbName=BRE1_Q2539;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/12/09 released repset.5013881.smoothedM.clusters.gff3 GSE20813, GSM520999, GSM520999, GSM521000, GSM521001, GSM521002
924 CP190-HB.BG3 Karpen Pirrotta ChIP-chip chromatin Target=Cp190;AbName=CP190-HB;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 9/4/09 10/12/09 released repset.4623893.smoothedM.clusters.gff3 GSE20814, GSM521003, GSM521003, GSM521004, GSM521005, GSM521006
925 CP190-HB.S2 Karpen Pirrotta ChIP-chip chromatin Target=Cp190;AbName=CP190-HB;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/12/09 released repset.4621224.smoothedM.clusters.gff3 GSE20815, GSM521007, GSM521007, GSM521008, GSM521009, GSM521010
926 dMi-2_Q2626.S2 Karpen Kuroda ChIP-chip chromatin Target=Mi-2;AbName=dMi-2_Q2626;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/12/09 released repset.5013876.smoothedM.clusters.gff3 GSE20816, GSM521011, GSM521011, GSM521012, GSM521013, GSM521014
927 dRING Q3200.BG3 Karpen Pirrotta ChIP-chip chromatin Target=Sce;AbName=dRING Q3200;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 9/4/09 10/15/09 released repset.8061139.smoothedM.clusters.gff3 GSE20817, GSM521015, GSM521015, GSM521016, GSM521017, GSM521018
928 dRING Q3200.S2 Karpen Pirrotta ChIP-chip chromatin Target=Sce;AbName=dRING Q3200;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/15/09 released repset.8061137.smoothedM.clusters.gff3 GSE20818, GSM521019, GSM521019, GSM521020, GSM521021, GSM521022
930 H3K18Ac (new lot).Clone_8 Karpen Elgin ChIP-chip chromatin modification Target=H3K18Ac;AbName=H3K18Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 9/4/09 10/12/09 released repset.8061138.smoothedM.clusters.gff3 GSE20819, GSM521023, GSM521023, GSM521024, GSM521025, GSM521026
931 H3K36me3.14-16 hr OR embryo Karpen Kuroda ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 16 9/4/09 10/13/09 released repset.4161794.smoothedM.clusters.gff3 GSE23457, GSM575364, GSM575364, GSM575365, GSM575366, GSM575367
932 H3K36me3.2-4 hr OR embryo Karpen Kuroda ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 9/4/09 10/13/09 released repset.4161797.smoothedM.clusters.gff3 GSE23458, GSM575368, GSM575368, GSM575369, GSM575370, GSM575371
936 H3K9me2-Ab2 (new lot).2-4 hr OR embryo Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 9/4/09 10/13/09 released repset.4162511.smoothedM.clusters.gff3
937 H3K9me2-Ab2 (new lot).Clone_8 Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 9/4/09 10/12/09 released repset.8061125.smoothedM.clusters.gff3 GSE20820, GSM521027, GSM521027, GSM521028, GSM521029, GSM521030
938 H3K9me2-Ab2 (new lot).Kc Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 9/4/09 10/12/09 released repset.4623896.smoothedM.clusters.gff3 GSE20821, GSM521031, GSM521031, GSM521032, GSM521033, GSM521034
940 H3K9me3 (new lot).Clone_8 Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 9/4/09 10/12/09 released repset.8061134.smoothedM.clusters.gff3 GSE20822, GSM521035, GSM521035, GSM521036, GSM521037, GSM521038
941 HP1b (Henikoff).S2 Karpen Elgin ChIP-chip chromatin Target=HP1b;AbName=HP1b (Henikoff);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 9/4/09 released repset.5014217.smoothedM.clusters.gff3 GSE20823, GSM521039, GSM521039, GSM521040, GSM521041, GSM521042
942 HP1c (MO 462).BG3 Karpen Elgin ChIP-chip chromatin Target=HP1c;AbName=HP1c (MO 462);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 9/4/09 9/4/09 released repset.5014216.smoothedM.clusters.gff3 GSE20824, GSM521043, GSM521043, GSM521044, GSM521045, GSM521046
943 HP1c (MO 462).S2 Karpen Elgin ChIP-chip chromatin Target=HP1c;AbName=HP1c (MO 462);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/12/09 released repset.5013686.smoothedM.clusters.gff3 GSE20825, GSM521047, GSM521047, GSM521048, GSM521049, GSM521050
944 HP2 (Ab2-90).S2 Karpen Elgin ChIP-chip chromatin Target=Su(var)2-HP2;AbName=HP2 (Ab2-90);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/12/09 released repset.4623897.smoothedM.clusters.gff3 GSE20826, GSM521051, GSM521051, GSM521052, GSM521053, GSM521054
945 JIL1_Q3433.S2 Karpen Kuroda ChIP-chip chromatin Target=JIL-1;AbName=JIL1_Q3433;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/12/09 released repset.5013871.smoothedM.clusters.gff3 GSE20827, GSM521055, GSM521055, GSM521056, GSM521057, GSM521058
946 MBD-R2_Q2567.S2 Karpen Kuroda ChIP-chip chromatin Target=MBD-R2;AbName=MBD-R2_Q2567;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/12/09 released repset.5013879.smoothedM.clusters.gff3 GSE20828, GSM521059, GSM521059, GSM521060, GSM521061, GSM521062
947 NURF301_Q2602.S2 Karpen Kuroda ChIP-chip chromatin Target=E(bx);AbName=NURF301_Q2602;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 10/12/09 released repset.5013880.smoothedM.clusters.gff3 GSE20829, GSM521063, GSM521063, GSM521064, GSM521065, GSM521066
948 PCL Q3412.BG3 Karpen Pirrotta ChIP-chip chromatin Target=Pcl;AbName=PCL Q3412;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 9/4/09 10/15/09 released repset.8061127.smoothedM.clusters.gff3 GSE20830, GSM521067, GSM521067, GSM521068, GSM521069, GSM521070
949 PIWI-Q2569.Kc Karpen Elgin ChIP-chip chromatin Target=piwi;AbName=PIWI-Q2569;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 9/4/09 10/12/09 released repset.4623034.smoothedM.clusters.gff3 GSE20831, GSM521071, GSM521071, GSM521072, GSM521073, GSM521074, GSM521075
950 RNA pol II (ALG).BG3 Karpen Kuroda ChIP-chip chromatin Target=RpII215;AbName=RNA pol II (ALG);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 9/4/09 9/4/09 released repset.4621045.smoothedM.clusters.gff3 GSE20832, GSM521076, GSM521076, GSM521077, GSM521078, GSM521079
951 SU(HW)-HB.BG3 Karpen Pirrotta ChIP-chip chromatin Target=su(Hw);AbName=SU(HW)-HB;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 9/4/09 10/12/09 released repset.4623888.smoothedM.clusters.gff3 GSE20833, GSM521080, GSM521080, GSM521081, GSM521082, GSM521083
952 Su(var)3-9.BG3 Karpen Elgin ChIP-chip chromatin Target=Su(var)3-9;AbName=Su(var)3-9;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 9/4/09 9/4/09 released repset.4623889.smoothedM.clusters.gff3 GSE20834, GSM521084, GSM521084, GSM521085, GSM521086, GSM521087
953 WDS_Q2691.S2 Karpen Karpen ChIP-chip chromatin Target=wds;AbName=WDS_Q2691;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 9/4/09 released repset.8061128.smoothedM.clusters.gff3 GSE20835, GSM521088, GSM521088, GSM521089, GSM521090, GSM521091
954 H3K4me2.OR Head Nuclei Karpen Elgin ChIP-chip chromatin modification Target=H3K4Me2;AbName=H3K4Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE adult head adult: adult stage 9/4/09 10/14/09 released repset.4161957.smoothedM.clusters.gff3 GSE23459, GSM575372, GSM575372, GSM575373, GSM575374, GSM575375
955 HP1 wa191.D.mel 3rd Instar Larvae Nuclei Karpen Elgin ChIP-chip chromatin Target=Su(var)205;AbName=HP1 wa191;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism larva: larval stage, third instar larval stage 9/4/09 10/14/09 released repset.5013685.smoothedM.clusters.gff3 GSE23460, GSM575376, GSM575376, GSM575377, GSM575378, GSM575379
956 H3K9me2 antibody2.D.mel 3rd Instar Larvae Nuclei Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism larva: larval stage, third instar larval stage 9/4/09 10/4/10 released repset.4161959.smoothedM.clusters.gff3
957 HP1 wa191.OR Head Nuclei Karpen Elgin ChIP-chip chromatin Target=Su(var)205;AbName=HP1 wa191;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE adult head adult: adult stage 9/4/09 10/14/09 released repset.5013687.smoothedM.clusters.gff3 GSE23461, GSM575380, GSM575380, GSM575381, GSM575382, GSM575383
958 H3K9me3 (new lot).D.mel 3rd Instar Larvae Nuclei Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism larva: larval stage, third instar larval stage 9/4/09 10/14/09 released repset.5013680.smoothedM.clusters.gff3 GSE23462, GSM575384, GSM575384, GSM575385, GSM575386, GSM575387
963 H3K79Me.S2 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K79Me1;AbName=H3K79Me1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 9/4/09 released repset.4161604.smoothedM.clusters.gff3 GSE20836, GSM521092, GSM521092, GSM521093, GSM521094, GSM521095
964 H3K9ac.Clone_8 Karpen Elgin ChIP-chip chromatin modification Target=H3K9Ac;AbName=H3K9Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 9/4/09 10/12/09 released repset.8061136.smoothedM.clusters.gff3 GSE20837, GSM521096, GSM521096, GSM521097, GSM521098, GSM521099
965 H3K4me2.ab.S2 Karpen Elgin ChIP-chip chromatin modification Target=H3K4Me2;AbName=H3K4Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 9/4/09 9/4/09 released repset.7766223.smoothedM.clusters.gff3 GSE20838, GSM521100, GSM521100, GSM521101, GSM521102, GSM521103
966 H3K4Me3(LP).2-4 hr OR embryo Karpen Pirrotta ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3 LP;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 9/4/09 10/14/09 released repset.4161803.smoothedM.clusters.gff3 GSE23463, GSM575388, GSM575388, GSM575389, GSM575390
967 H3K4me3.BG3 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 9/4/09 10/12/09 released repset.5014168.smoothedM.clusters.gff3 GSE20839, GSM521104, GSM521104, GSM521105, GSM521106, GSM521107
970 E0-4_H3K27Ac - Set 2 White White ChIP-chip chromatin modification Target=H3K27Ac;AbName=H3K27Ac;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/16/09 released E0-4_H3K27Ac-Set2_merged_dcc.gff
971 E0-4_H3K9Me3 - Set 2 White White ChIP-chip chromatin modification Target=H3K9Me3,His3:CG33806;AbName=H3K9Me3;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/4/09 10/16/09 released E0-4_H3K9Me3-Set2_DCC_merged.bed.gff
973 Histone_H3K36me3_N2_EEMB_(HK00001_H3K36ME313C9_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/7/09 11/27/09 released , GSE22719, GSM562712, GSM562713, GSM562714
978 E4-8_sens White White ChIP-chip chromatin Target=sens;AbName=sens;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/4/09 10/15/09 released sens_sens-E4-8h_pvalue_Dm_BDGPv5.bed.gff
979 E4-8_GFP-sens White White ChIP-chip chromatin Target=sens;AbName=odg-GFP;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster SENS-GFP whole organism embryo: embryonic stage 9-12 9/4/09 10/15/09 released GFP_sens-E-4-8h_pvalue_Dm_BDGPv5.bed.gff
982 Histone_H3K9me3_N2_EEMB_2_(HK00009_H3K9ME32F3_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/7/09 9/7/09 released , GSE22720, GSM562715, GSM562716
983 RNAi Untreated (control) S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling Drosophila melanogaster S2-DRSC 9/4/09 9/28/09 released GSM461176
984 L2_PolII ChIP-seq White White ChIP-seq chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301 Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/4/09 9/4/09 released L2_PolII_density.bed.gff3 GSM432589
985 E8-12_CBP_Set2-chip-seq White White ChIP-seq chromatin Target=nej;AbName=CBP_body Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/4/09 10/16/09 released E8-12_CBP-Set2_density.bed.gff3 GSM451802
992 3' UTR 454 sequencing pilot - alignments Piano Piano RACE gene model Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, embryo 9/4/09 11/16/09 released GSM443959
1011 RNAi CG10128 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=tra2 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461201
1012 RNAi CG10203 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=xl6 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461195
1013 RNAi CG10851 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=B52 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461198
1014 RNAi CG12749 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=Hrb87F Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461187
1015 RNAi CG13425 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=bl Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461190
1016 RNAi CG1559 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=Upf1 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461204
1017 RNAi CG16901 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=sqd Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461189
1018 RNAi CG17136 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=Rbp1 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461196
1019 RNAi CG17838 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=CG17838 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461188
1020 RNAi CG18426 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=ytr Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461199
1021 RNAi CG1987 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=Rbp1-like Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461194
1022 RNAi CG30122 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=CG30122 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461191
1023 RNAi CG31000 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=heph Drosophila melanogaster S2-DRSC 9/14/09 9/14/09 released GSM461202
1024 RNAi CG3249 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=yu Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461207
1025 RNAi CG4602 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=Srp54 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461192
1026 RNAi CG5099 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=msi Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461185
1027 RNAi CG5442 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=SC35 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461197
1028 RNAi CG5655 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=Rsf1 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461193
1029 RNAi CG5821 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=qkr58E-2 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461205
1030 RNAi CG5836 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=SF1 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461206
1031 RNAi CG6946 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=glo Drosophila melanogaster S2-DRSC 9/14/09 9/14/09 released GSM461183
1032 RNAi CG7437 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=mub Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461203
1033 RNAi CG7878 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=CG7878 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461209
1034 RNAi CG7971 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=CG7971 Drosophila melanogaster S2-DRSC 9/14/09 9/28/09 released GSM461200
1040 5'RACE 454 sequencing - pool 1 Celniker Celniker RACE gene model Reactions=249998 Drosophila melanogaster y; cn bw sp early embryonic cell, blastoderm cell, gastrula cell embryo: cleavage stage, extended germ band stage, gastrula stage, pre-blastoderm stage 9/14/09 2/14/10 reviewing CG11437.gff, CG1665.gff, Aats-asn.gff, CG12746.gff, CG13868.gff, ben.gff, amd.gff, Art7.gff, CG13217.gff, CG1440.gff, CG14879.gff, CG12942.gff, CG11737.gff, CG14445.gff, CG13738.gff, CG12736.gff, Act57B.gff, CG14722.gff, CG12118.gff, CG13921.gff, CG13676.gff, CG13278.gff, CG15073.gff, Cdc6.gff, CG11137.gff, CG13126.gff, CG12523.gff, Axn.gff, CalpA.gff, capt.gff, blot.gff, CG13339.gff, amon.gff, CG1109.gff, Atg6.gff, CG14326.gff, CG1545.gff, bigmax.gff, CG1623.gff, CG11652.gff, CG14915.gff, CG13779.gff, CG14043.gff, CG14213.gff, CG10741.gff, bbg.gff, CG13360.gff, Arr1.gff, betaTub60D.gff, Cdk8.gff, CG10286.gff, CG10338.gff, bmm.gff, CG13014.gff, CG14104.gff, CG14291.gff, CG12134.gff, CG11963.gff, CG14102.gff, CG15814.gff, CG10359.gff, CG13920.gff, CG11902.gff, CG13188.gff, CG10225.gff, CG14314.gff, CG10825.gff, CG12129.gff, CG12769.gff, alpha4GT1.gff, CG1544.gff, bsk.gff, CG13990.gff, CG10465.gff, Arp11.gff, bves.gff, AP-2sigma.gff, Ark.gff, Akap200.gff, CG14215.gff, CG11299.gff, beat-Ic.gff, Brf.gff, CG11191.gff, CG11844.gff, CG12333.gff, Bap60.gff, CG14814.gff, CG13741.gff, CG1532.gff, CG14205.gff, As.gff, cbt.gff, Art3.gff, CG11242.gff, Atg8a.gff, CG13123.gff, CG13295.gff, Ac78C.gff, casp.gff, CG1041.gff, CG10265.gff, CG15212.gff, CG11127.gff, CG10073.gff, CG11659.gff, alphaTub85E.gff, arm.gff, CG11092.gff, CG12065.gff, borr.gff, CG11696.gff, CG11781.gff, barr.gff, Arp8.gff, CG13784.gff, CG12975.gff, ave.gff, CG15439.gff, CG15881.gff, CG11753.gff, ade5.gff, CG12107.gff, Bj1.gff, CDase.gff, CG1418.gff, Cdk5alpha.gff, Cenp-C.gff, CG10565.gff, Ag5r2.gff, CG11875.gff, CG1273.gff, bai.gff, CG11555.gff, CG10221.gff, CG13398.gff, CG12391.gff, Aats-met.gff, CG15715.gff, Aut1.gff, CG13060.gff, Ccp84Ac.gff, CG11163.gff, CG12643.gff, Ack.gff, CG11779.gff, CG14591.gff, bcn92.gff, bun.gff, CG11267.gff, CG13197.gff, amx.gff, Btk29A.gff, CG10419.gff, alph.gff, CG14650.gff, CG10151.gff, CG13343.gff, cerv.gff, CG13085.gff, CG10916.gff, Brd8.gff, CdsA.gff, CG13913.gff, CG10576.gff, bif.gff, CG11897.gff, CG12859.gff, CG14812.gff, CG15916.gff, CG12121.gff, CG12355.gff, CG12734.gff, CG1105.gff, aop.gff, CG10383.gff, CG14830.gff, CG13284.gff, cag.gff, Akt1.gff, CG14329.gff, CG14816.gff, bc10.gff, CG10306.gff, CG14232.gff, CG12237.gff, CG12821.gff, CG13189.gff, CG11892.gff, bur.gff, CG12163.gff, CG1582.gff, Cap.gff, Ccap.gff, aru.gff, CG10200.gff, CG11590.gff, CG14528.gff, CG15923.gff, Arc-p20.gff, CG12034.gff, CG14005.gff, CG12935.gff, CG13203.gff, CG14899.gff, CG15515.gff, CG13101.gff, Aac11.gff, CG10344.gff, CG10598.gff, CG12493.gff, CG11125.gff, CG10527.gff, CG14641.gff, CG11586.gff, CG13813.gff, Ca-P60A.gff, CG11848.gff, CG11052.gff, CG12420.gff, CG11334.gff, CG10646.gff, CG12708.gff, CG1603.gff, CG1637.gff, CG13097.gff, CG14959.gff, CG10353.gff, alpha-Est4.gff, Cdc27.gff, Cdep.gff, betaggt-II.gff, CG10882.gff, CG10462.gff, ATPsyn-d.gff, cenB1A.gff, CG1518.gff, CG10171.gff, CG10366.gff, awd.gff, CG13305.gff, Actn.gff, CG1600.gff, CG14352.gff, beta'Cop.gff, CG12206.gff, Art1.gff, CaMKI.gff, CG14014.gff, CG10092.gff, CG11200.gff, CG14715.gff, CG10555.gff, CG10347.gff, CG15706.gff, CG11971.gff, CG1599.gff, CG12128.gff, CG12920.gff, CG11655.gff, CG10064.gff, Ast.gff, CG15022.gff, ara.gff, CG11905.gff, cact.gff, CG12200.gff, CG15506.gff, CG12998.gff, CG1275.gff, CG1381.gff, CG10184.gff, CG10263.gff, btd.gff, CG10512.gff, CG11284.gff, AP-1sigma.gff, ced-6.gff, cenG1A.gff, CG10903.gff, CG14454.gff, CG15209.gff, CBP.gff, alphaCop.gff, CG13472.gff, CG10641.gff, CG12880.gff, CG10960.gff, CG11353.gff, CDC45L.gff, CG14321.gff, CG14414.gff, Aats-ala.gff, CG1620.gff, CG12268.gff, atms.gff, CG10625.gff, CG14275.gff, CG10754.gff, CG11380.gff, BM-40-SPARC.gff, CG12918.gff, CG14044.gff, CG15643.gff, Cdc42.gff, CG10638.gff, CG1371.gff, CG1607.gff, CG16728.gff, al.gff, CG11926.gff, CG13321.gff, CG12130.gff, AP-2.gff, bol.gff, CG14450.gff, CG14290.gff, cac.gff, Cas.gff, CG11444.gff, Aos1.gff, CG10904.gff, CG13216.gff, Ada1-2.gff, CG14803.gff, CG11006.gff, CG12607.gff, CG13636.gff, CG11910.gff, alpha-Est8.gff, Cbp20.gff, CG11384.gff, CG11808.gff, angel.gff, CG10830.gff, CG12721.gff, Cctgamma.gff, CG10550.gff, CG11149.gff, CG12325.gff, CG10426.gff, CG13025.gff, CG15044.gff, CG13393.gff, CG1646.gff, CG12084.gff, AnnX.gff, CG13624.gff, CG11103.gff, CG14324.gff, CG10702.gff, C3G.gff, CG14100.gff, CG15093.gff, bowl.gff, CG13933.gff, CG10188.gff, CG11877.gff, CG10703.gff, CG12341.gff, CG10631.gff, bin3.gff, CG10777.gff, CG1399.gff, CG10959.gff, CG12547.gff, CG12991.gff, CG11486.gff, CG12400.gff, CG15080.gff, Act5C.gff, CG14132.gff, Atg1.gff, CG12288.gff, Bgb.gff, CG1308.gff, c11.1.gff, CG14478.gff, CG13333.gff, CG11367.gff, Acph-1.gff, Arp5.gff, CG10170.gff, CG10375.gff, Aats-thr.gff, CG10803.gff, CG10535.gff, CG14853.gff, CG16708.gff, CG12116.gff, CG13124.gff, CG11357.gff, CG11909.gff, CG12081.gff, CG12413.gff, CG16712.gff, Ahcy13.gff, CG10984.gff, CG1240.gff, by.gff, BCL7-like.gff, CG15382.gff, CG10165.gff, CG15731.gff, alpha-Est2.gff, CG12026.gff, bs.gff, CG1360.gff, AnnIX.gff, CG10069.gff, CG11241.gff, CG12096.gff, AGO2.gff, CG1218.gff, CG15160.gff, CG15651.gff, alpha-Est3.gff, alpha-Spec.gff, CG11050.gff, CG11961.gff, Ald.gff, CG12990.gff, CG12728.gff, CG14149.gff, CG14153.gff, CG14270.gff, ATPsyn-Cf6.gff, CG11459.gff, CG15094.gff, CG13424.gff, Aats-ile.gff, CG10602.gff, Bka.gff, CG12054.gff, CG14782.gff, CG10953.gff, Aats-gln.gff, Ada.gff, CG14931.gff, CG15629.gff, CG1246.gff, CG11131.gff, CG11447.gff, CG14657.gff, CG1120.gff, Cbp53E.gff, Arf79F.gff, CG14235.gff, CG12851.gff, Bub3.gff, CG11403.gff, Bc.gff, bt.gff, CG11166.gff, CG14036.gff, ball.gff, CG14220.gff, CG15835.gff, baf.gff, ana.gff, bocksbeutel.gff, brk.gff, CG11534.gff, CG15739.gff, Arc-p34.gff, Aats-gly.gff, CG10035.gff, CG1090.gff, CG1091.gff, CG13604.gff, beat-IIIc.gff, CG11474.gff, arr.gff, CG10283.gff, CG12213.gff, CG13640.gff, CG15735.gff, Atf6.gff, CG1208.gff, CG14667.gff, alpha-Est7.gff, AGO1.gff, aub.gff, CG10932.gff, CG11562.gff, CG13377.gff, CG10981.gff, CG11347.gff, Ast-C.gff, CG11337.gff, CG14561.gff, bab2.gff, Bap170.gff, CG1647.gff, CG1193.gff, CG12773.gff, CG13594.gff, CG15522.gff, Bsg25D.gff, CG10492.gff, CG12016.gff, CG10664.gff, CG11063.gff, alpha-Man-II.gff, ari-1.gff, CG11858.gff, CG1309.gff, CG14439.gff, CG1662.gff, CG10176.gff, CG10253.gff, CG10804.gff, CG11309.gff, CG11670.gff, Adk2.gff, CG1307.gff, CG15544.gff, Adar.gff, CG11876.gff, CG13159.gff, bbx.gff, CG14801.gff, CG11208.gff, CG14253.gff, CG14442.gff, CG10494.gff, CG1103.gff, CG1265.gff, Antp.gff, cathD.gff, CG10217.gff, CG11306.gff, CG14452.gff, BEAF-32.gff, CG10924.gff, CG11964.gff, CG12263.gff, CG10927.gff, betaCop.gff, alt.gff, Catsup.gff, CG12936.gff, CG13384.gff, CG11975.gff, CG14866.gff, CG1503.gff, CG10496.gff, Acp65Aa.gff, CG14040.gff, brm.gff, CG14317.gff, b6.gff, Aats-tyr.gff, Ady43A.gff, CG10910.gff, CG14804.gff, CG13550.gff, CG12009.gff, CG14435.gff, CG12259.gff, CG13318.gff, CG10590.gff, CG10068.gff, CG10132.gff, CG10249.gff, CG10639.gff, CG11247.gff, CG11151.gff, ac.gff, CG15743.gff, CG11033.gff, CG12974.gff, CG12239.gff, CG11107.gff, CG12483.gff, CG12155.gff, BicD.gff, CG11044.gff, Apc2.gff, CG10195.gff, CG10267.gff, CG10632.gff, CG14615.gff, CG12262.gff, CAH1.gff, Buffy.gff, CG14856.gff, CG10912.gff, CG1486.gff, CG14883.gff, Caf1-180.gff, CG15480.gff, CG1640.gff, CanA1.gff, ago.gff, CG12945.gff, CG1104.gff, CG12519.gff, CG15005.gff, CG15011.gff, CG15737.gff, beat-IIb.gff, Ada1-1.gff, CanB2.gff, CG14619.gff, CG10627.gff, CG14618.gff, CG10585.gff, CG10949.gff, CG13902.gff, CG12877.gff, Atg5.gff, CG13183.gff, CG13847.gff, CG13949.gff, 26-29-p.gff, Cap-G.gff, CG10592.gff, Aef1.gff, CG12582.gff, CG12717.gff, CG1299.gff, CG13875.gff, Bub1.gff, cactin.gff, Cad96Ca.gff, CG15630.gff, alphaTub67C.gff, CG10153.gff, CG12252.gff, capu.gff, CG10077.gff, argos.gff, Cbl.gff, CG12581.gff, B52.gff, CG12024.gff, CG1213.gff, CG10936.gff, CG13297.gff, CG13830.gff, CG11814.gff, Apc.gff, CG10026.gff, CG13912.gff, CG10081.gff, CG10211.gff, CG13551.gff, CG14207.gff, CG14375.gff, ATPsyn-b.gff, Abd-B.gff, CG11984.gff, CG10289.gff, CG11190.gff, CG11883.gff, CG15727.gff, CG11915.gff, CG12424.gff, CG11419.gff, CG14453.gff, CG15312.gff, CG15314.gff, Calx.gff, Asator.gff, bor.gff, CG10747.gff, CG10083.gff, beta4GalT7.gff, CG13907.gff, CG14103.gff, 7B2.gff, CG13065.gff, CG14712.gff, CG14107.gff, CG14921.gff, CG12703.gff, 5PtaseI.gff, Caki.gff, CG15765.gff, abs.gff, CG13667.gff, CG10336.gff, CG13041.gff, ARP-like.gff, CG11329.gff, CG15436.gff, CG15786.gff, CG11388.gff, Atpalpha.gff, CG12576.gff, Abi.gff, CG10038.gff, CG10050.gff, br.gff, CG15658.gff, CG1513.gff, Cat.gff, CG10209.gff, CG11030.gff, CG11752.gff, CG12788.gff, CG13088.gff, CG14881.gff, bnb.gff, CG14762.gff, Bre1.gff, CG12321.gff, CG10447.gff, CG11999.gff, Actr13E.gff, CG12338.gff, CG10154.gff, CG11417.gff, CG14211.gff, CG11679.gff, CG11699.gff, CG16749.gff, CG10671.gff, CG14570.gff, CG12393.gff, CG16718.gff, ApepP.gff, CG13900.gff, CG12713.gff, CG10591.gff, CG15529.gff, CG11370.gff, CG12418.gff, CG13139.gff, CG13704.gff, CG15887.gff, Ance-4.gff, CG10874.gff, CG11266.gff, CG13373.gff, CG15111.gff, CG15770.gff, CG11315.gff, CG15203.gff, CG11802.gff, CG14721.gff, Bsg25A.gff, CG14109.gff, CG14971.gff, CG1416.gff, APC4.gff, CG13887.gff, Aats-arg.gff, CG10277.gff, CG10413.gff, Act87E.gff, alpha-Est1.gff, CG11136.gff, CG13366.gff, aret.gff, alpha-Man-IIb.gff, CG11456.gff, bwa.gff, CG11722.gff, CG12910.gff, Alg-2.gff, blw.gff, akirin.gff, CG10958.gff, CG1115.gff, car.gff, CG1397.gff, CG14683.gff, CG1622.gff, CG14110.gff, CG12602.gff, CG12177.gff, CG11777.gff, CG1233.gff, CG15186.gff, Cbp80.gff, CG13349.gff, CG14966.gff, CG12001.gff, CG11426.gff, CG10191.gff, CG1598.gff, Ag5r.gff, CG11055.gff, Act42A.gff, cdc2c.gff, Ccp84Ag.gff, CG14521.gff, beat-IV.gff, CG10722.gff, Atg18.gff, CG10262.gff, CG10623.gff, CG11576.gff, CG1344.gff, CG1516.gff, CG14572.gff, CG13096.gff, CG14937.gff, CG11791.gff, Ccp84Ab.gff, CG10724.gff, CG1304.gff, CG11504.gff, alien.gff, BicC.gff, CG14749.gff, ab.gff, brn.gff, Amph.gff, botv.gff, Cad99C.gff, CG10424.gff, CG15589.gff, CG11760.gff, CG14995.gff, Cct1.gff, ATPsyn-gamma.gff, CG1444.gff, Ced-12.gff, CG15120.gff, CG14033.gff, Aats-phe.gff, bic.gff, CG14626.gff, CG10992.gff, CG12079.gff, CG11206.gff, CG11723.gff, CG14687.gff, CG11418.gff, abba.gff, BtbVII.gff, CG11407.gff, CG13102.gff, CG14646.gff, CG1636.gff, CG12004.gff, CG13506.gff, CG14299.gff, Arf102F.gff, CG10914.gff, CG1291.gff, CG13653.gff, CG14655.gff, CG15390.gff, Bsg.gff, CG10208.gff, CG10516.gff, CG10470.gff, CG1227.gff, CG14786.gff, CG14230.gff, CG15345.gff, Acox57D-d.gff, betaTub97EF.gff, CG15267.gff, Ama.gff, Arf51F.gff, 14-3-3epsilon.gff, Arf72A.gff, CG14780.gff, ATbp.gff, Aats-his.gff, btz.gff, CAP.gff, ari-2.gff, bib.gff, CG13463.gff, CG1492.gff, CG12817.gff, CG1550.gff, CG10107.gff, CG10428.gff, CG10373.gff, Ahcy89E.gff, CG11438.gff, CG14312.gff, babo.gff, CG11851.gff, brat.gff, CG11120.gff, CG13609.gff, CG14411.gff, alphaTub84D.gff, 5-HT7.gff, CG10947.gff, AP-50.gff, bip2.gff, CG10467.gff, CG1499.gff, CG15347.gff, CG15173.gff, CG1074.gff, CG15611.gff, CanB.gff, CG12162.gff, CG13043.gff, CG13737.gff, CG12534.gff, CG12950.gff, CG12343.gff, CG13995.gff, cdc2rk.gff, CG14327.gff, CG10660.gff, CG11601.gff, CG1244.gff, CG13033.gff, bl.gff, bw.gff, CG14509.gff, AGO3.gff, CG10435.gff, CG14815.gff, CG13003.gff, 140up.gff, aay.gff, CG14502.gff, caz.gff, CG14939.gff, CG10425.gff, CG12214.gff, abd-A.gff, CG1602.gff, CG11577.gff, CG14629.gff, asp.gff, CG13011.gff, blow.gff, c(3)G.gff, asf1.gff, CG1368.gff, 5-HT1A.gff, CG12112.gff, ash2.gff, Adam.gff, CG11560.gff, CG14569.gff, CG16721.gff, CG11042.gff, CG15211.gff, CG11674.gff, CG15771.gff, CG10414.gff, Aats-ser.gff, CG12856.gff, CG10543.gff, CG15896.gff, CG11265.gff, CG14229.gff, CG1236.gff, CG12299.gff, Aly.gff, CG15083.gff, CG10268.gff, CG10915.gff, beta4GalNAcTB.gff, beta-Spec.gff, Ate1.gff, CG12608.gff, CG13277.gff, CG15717.gff, Atg4.gff, CG10333.gff, CG11089.gff, CG10650.gff, CG13643.gff, alc.gff, CG10098.gff, Cad74A.gff, CG11160.gff, CG11318.gff, CG11660.gff, CG13616.gff, Atu.gff, CG11880.gff, CG10880.gff, CG1092.gff, CG11686.gff, CG12182.gff, CG13272.gff, CG15828.gff, Arp87C.gff, CG11523.gff, ATP7.gff, Cby.gff, CG11739.gff, CG11966.gff, Alas.gff, CG1136.gff, Aats-val.gff, CG14194.gff, CG10321.gff, CG11796.gff, CG14395.gff, CG10802.gff, CG14476.gff, CG15890.gff, Adhr.gff, bap.gff, CG12702.gff, CG10139.gff, CG10082.gff, CG11919.gff, CG11912.gff, CG14438.gff, CG1572.gff, CG13585.gff, bgm.gff, CG1143.gff, CG14894.gff, CG13160.gff, CG10237.gff, CG11455.gff, CG13698.gff, CG15561.gff, CaMKII.gff, CG13362.gff, CG14341.gff, CG10672.gff, CG10907.gff, CG12123.gff, bcd.gff, CG14693.gff, CG15445.gff, aralar1.gff, beta4GalNAcTA.gff, Aats-cys.gff, CG12194.gff, CG14621.gff, Ccp84Ae.gff, cdm.gff, CG10000.gff, CG11617.gff, CG15628.gff, CG12858.gff, CG1298.gff, CG1342.gff, cer.gff, CG10990.gff, CG11188.gff, CG10616.gff, AlstR.gff, CG1129.gff, CG11537.gff, CG12264.gff, CAH2.gff, CG14470.gff, CG12863.gff, CG10725.gff, CG14427.gff, CG15818.gff, CG13335.gff, CG10131.gff, CG11638.gff, bora.gff, CG11069.gff, alpha-Cat.gff, c(2)M.gff, CG12304.gff, CG12546.gff, CG14617.gff, 4EHP.gff, aph-1.gff, CG12384.gff, CG15279.gff, CG14545.gff, CG15084.gff, CG13699.gff, Actbeta.gff, ade2.gff, beat-Ib.gff, bys.gff, CG11967.gff, CG14998.gff, CG10669.gff, CG15701.gff, CG13599.gff, CG11982.gff, CG13890.gff, CG12171.gff, CG12236.gff, CG12125.gff, CG15738.gff, betaTub56D.gff, CG12022.gff, CG13901.gff, CG14968.gff, CG10326.gff, CG10311.gff, CG14265.gff, CG15626.gff, CG13894.gff, CG14425.gff, Ank.gff, CG13151.gff, CG14598.gff, Ard1.gff, Atx2.gff, CG10354.gff, CG12082.gff, CG13004.gff, CG13313.gff, CG15309.gff, CG10731.gff, CG13213.gff, CG15236.gff, CG12785.gff, CG12203.gff, CG11399.gff, Anxb11.gff, boi.gff, CG15438.gff, CG10495.gff, Blimp-1.gff, CG1673.gff, Camta.gff, CG11376.gff, CG14820.gff, CG12567.gff, CG10186.gff, CG11786.gff, CG12161.gff, CG14977.gff, CG10376.gff, CG12540.gff, AP-47.gff, Baldspot.gff, CG12911.gff, CG14787.gff, apt.gff, arg.gff, CG14980.gff, CG11133.gff, Bap55.gff, CG11874.gff, CAP-D2.gff, CG11263.gff, CG11771.gff, CG15270.gff, CG13049.gff, CG11943.gff, CG11710.gff, CG10158.gff, CG12480.gff, CG13089.gff, alpha-Est5.gff, Brd.gff, CG15695.gff, CG10144.gff, Art4.gff, asrij.gff, CG15141.gff, CG15047.gff, CG11968.gff, CG10103.gff, Cchl.gff, CG10433.gff, CG10743.gff, CG14868.gff, CG10732.gff, CG1316.gff, ATPsyn-beta.gff, CG13760.gff, CG12723.gff, CG14798.gff, CG11138.gff, CG11596.gff, CG14231.gff, CG15117.gff, beat-IIa.gff, B-H1.gff, agt.gff, CG10911.gff, AlkB.gff, CG11593.gff, CaBP1.gff, adp.gff, 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CG10948.gff, CG12104.gff, CG10962.gff, Bap.gff, ALiX.gff, Adk1.gff, cal1.gff, CG10472.gff, CG13350.gff, Atet.gff, CG12301.gff, Adf1.gff, ACXD.gff, CG12159.gff, CG12869.gff, Aats-asp.gff, CG15118.gff, CG11248.gff, CG1234.gff, CG13937.gff, CG10933.gff, CG11147.gff, Ant2.gff, CG13795.gff, beat-Ia.gff, CG15098.gff, CG1648.gff, baz.gff, CG13185.gff, Appl.gff, CG13822.gff, CG14543.gff, Adgf-D.gff, CG14234.gff, CG11396.gff, CG11109.gff, az2.gff, CG12017.gff, cals.gff, CG12011.gff, CG13983.gff, CG13176.gff, atl.gff, CG10086.gff, CG1578.gff, CG12099.gff, CG1542.gff, CG10889.gff, Bruce.gff, CG11866.gff, CG12207.gff, CG13606.gff, CG1523.gff, cav.gff, CG14216.gff, CG14355.gff, CG15514.gff, CG12140.gff, CG1463.gff, CG13826.gff, CG13827.gff, CG13605.gff, Cdk4.gff, CG10133.gff, CG14565.gff, APC7.gff, c12.1.gff, CG12219.gff, CG13993.gff, Aats-leu.gff, CG11837.gff, Acf1.gff, Aps.gff, CG11400.gff, CG10628.gff, CG1317.gff, CG14935.gff, Argk.gff, Acer.gff, CG11811.gff, CG14967.gff, CG15817.gff, 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CG15747.gff, Arc42.gff, CG1621.gff, CG1134.gff, CG10055.gff, CG12753.gff, CG13196.gff, CG10444.gff, CG1116.gff, alphaTry.gff
1041 5'RACE 454 sequencing - pool 2 Celniker Celniker RACE gene model Reactions=249671 Drosophila melanogaster y; cn bw sp early embryonic cell, blastoderm cell, gastrula cell embryo: cleavage stage, extended germ band stage, gastrula stage, pre-blastoderm stage 9/14/09 2/14/10 reviewing CG6907.gff, CG4407.gff, CG5599.gff, CG5541.gff, CG17327.gff, CG31672.gff, CG34413.gff, CG4875.gff, CG34360.gff, CG16865.gff, CG30195.gff, CG2938.gff, CG31100.gff, CG32486.gff, CG5789.gff, CG33095.gff, CG4467.gff, CG4729.gff, CG3815.gff, CG7372.gff, CG17565.gff, CG32556.gff, CG2694.gff, CG32016.gff, CG33199.gff, CG7280.gff, CG31291.gff, CG4866.gff, CG5214.gff, CG6231.gff, CG2736.gff, CG4617.gff, CG6665.gff, CG5853.gff, CG32694.gff, CG2446.gff, CG31547.gff, CG6766.gff, CG16896.gff, CG7830.gff, CG31120.gff, CG5036.gff, CG5886.gff, CG31475.gff, CG6000.gff, CG32343.gff, CG4686.gff, CG2663.gff, CG31453.gff, CG4213.gff, CG30344.gff, CG17471.gff, CG2941.gff, CG4774.gff, CG30035.gff, CG4643.gff, CG31871.gff, 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CG31550.gff, CG5412.gff, CG18273.gff, CG4858.gff, CG17999.gff, CG6729.gff, CG16868.gff, CG6175.gff, CG4984.gff, CG1965.gff, CG2065.gff, CG3529.gff, CG6453.gff, CG7275.gff, CG5003.gff, CG5630.gff, CG5880.gff, CG17883.gff, CG41378.gff, CG7457.gff, CG31549.gff, CG6091.gff, CG3558.gff, CG4221.gff, CG30152.gff, CG6712.gff, CG31253.gff, CG33969.gff, CG6370.gff, CG7456.gff, CG7536.gff, CG16940.gff, CG18596.gff, CG17836.gff, CG3732.gff, CG4294.gff, CG7044.gff, CG1827.gff, CG6579.gff, CG2662.gff, CG31559.gff, CG7248.gff, CG16820.gff, CG17211.gff, CG33099.gff, CG32109.gff, CG6067.gff, CG32373.gff, CG4098.gff, CG3008.gff, CG6933.gff, CG17109.gff, CG18600.gff, CG40263.gff, CG33275.gff, CG5292.gff, CG7987.gff, CG5382.gff, CG30415.gff, CG5290.gff, CG5640.gff, CG6693.gff, CG6876.gff, CG32425.gff, CG6903.gff, CG7834.gff, CG32418.gff, CG31235.gff, CG4611.gff, CG5177.gff, CG3709.gff, CG5399.gff, CG2712.gff, CG31265.gff, CG7441.gff, CG2617.gff, CG6106.gff, CG6981.gff, CG2107.gff, CG33057.gff, CG6227.gff, CG32428.gff, CG5098.gff, CG6678.gff, CG3184.gff, CG4272.gff, CG7384.gff, CG7430.gff, CG2186.gff, CG5859.gff, CG3253.gff, CG42321.gff, CG6704.gff, CG2556.gff, CG17153.gff, CG6928.gff, CG6972.gff, CG7824.gff, CG4592.gff, CG2931.gff, CG31793.gff, CG6966.gff, CG3191.gff, CG3921.gff, CG3764.gff, CG4291.gff, CG17081.gff, CG3077.gff, CG7048.gff, CG7358.gff, CG33108.gff, CG4769.gff, CG4041.gff, CG17549.gff, CG17683.gff, CG3883.gff, CG3597.gff, CG33714.gff, CG7730.gff, CG5080.gff, CG5745.gff, CG2469.gff, CG4847.gff, CG7262.gff, CG31150.gff, CG18446.gff, CG6422.gff, CG17322.gff, CG1972.gff, CG7600.gff, CG1973.gff, CG30118.gff, CG18179.gff, CG3226.gff, CG7911.gff, CG7993.gff, CG7741.gff, CG4229.gff, CG18217.gff, CG3011.gff, CG17219.gff, CG7632.gff, CG33097.gff, CG2003.gff, CG5805.gff, CG5510.gff, CG6084.gff, CG4963.gff, CG6028.gff, CG5966.gff, CG3434.gff, CG6230.gff, CG1753.gff, CG31998.gff
1042 5'RACE 454 sequencing - pool 3 Celniker Celniker RACE gene model Reactions=251368 Drosophila melanogaster y; cn bw sp early embryonic cell, blastoderm cell, gastrula cell embryo: cleavage stage, extended germ band stage, gastrula stage, pre-blastoderm stage 9/14/09 2/14/10 reviewing Hel25E.gff, Hr78.gff, Cpr11B.gff, disco.gff, l(2)k09913.gff, MED27.gff, CG9972.gff, Hsc70-5.gff, Dek.gff, D1.gff, Ets97D.gff, CG8740.gff, Herp.gff, fs(1)Ya.gff, ksr.gff, CG9248.gff, Cyp4p2.gff, Chi.gff, eIF2B-epsilon.gff, Golgin84.gff, Hsc70-4.gff, Jhebp29.gff, CG8712.gff, Gmd.gff, Jon25Biii.gff, east.gff, Irp-1A.gff, dock.gff, Hs3st-B.gff, coro.gff, MED17.gff, fs(1)h.gff, CG9914.gff, Doc1.gff, GluRIIE.gff, Gl.gff, CG9005.gff, MED4.gff, Dlic2.gff, Cyp6d2.gff, Mat89Bb.gff, CG9305.gff, CG8398.gff, gig.gff, Cyp9b1.gff, Ent2.gff, dpr19.gff, CG8964.gff, Hcf.gff, Dyb.gff, Cp1.gff, Edem1.gff, CycG.gff, gsb.gff, eIF2B-delta.gff, CG9009.gff, CG8228.gff, Ide.gff, l(1)G0155.gff, Got2.gff, Mef2.gff, foxo.gff, Elongin-C.gff, gp210.gff, kay.gff, GC.gff, dare.gff, CG9170.gff, kz.gff, CG9139.gff, g.gff, CG9265.gff, Cyp6a18.gff, Cyp4e1.gff, endoA.gff, fend.gff, CG9747.gff, debcl.gff, krz.gff, knk.gff, l(2)35Df.gff, Hn.gff, crc.gff, elav.gff, CG8486.gff, CG8709.gff, CG9463.gff, dia.gff, Cyp301a1.gff, CG8142.gff, Cyp12c1.gff, CG8831.gff, CG9297.gff, Hs2st.gff, eIF5B.gff, l(2)37Ce.gff, CG9526.gff, l(2)09851.gff, ImpL2.gff, Lac.gff, CG9855.gff, Clc.gff, Klp68D.gff, Gbeta13F.gff, CG8129.gff, Lip4.gff, dve.gff, CG8399.gff, CG8191.gff, DopEcR.gff, Ilk.gff, lambdaTry.gff, ImpL3.gff, faf.gff, Fkbp13.gff, isopeptidase-T-3.gff, Invadolysin.gff, Eph.gff, Gdi.gff, CG9940.gff, MED9.gff, grim.gff, l(2)05070.gff, Cog7.gff, Mf.gff, LpR2.gff, dac.gff, Hsp26.gff, Fas2.gff, desat1.gff, CG8229.gff, Ku80.gff, inx3.gff, CG8909.gff, Klc.gff, Drip.gff, jagn.gff, FucTA.gff, inx7.gff, CG8412.gff, Cpr11A.gff, CycJ.gff, dco.gff, LanA.gff, CG9372.gff, CG9418.gff, Csl4.gff, CG9393.gff, lin19.gff, CG8814.gff, fkh.gff, CG9948.gff, fs(1)K10.gff, dpr9.gff, CG8195.gff, CG9363.gff, Eb1.gff, CG8569.gff, CG8001.gff, grp.gff, Kr-h2.gff, ea.gff, gem.gff, Glycogenin.gff, mbt.gff, Mcm10.gff, CG8379.gff, Kr-h1.gff, CG8147.gff, Idgf5.gff, Jon25Bi.gff, l(1)G0156.gff, Fas1.gff, drk.gff, grass.gff, mei-W68.gff, G-salpha60A.gff, halo.gff, dx.gff, CG9821.gff, her.gff, HGTX.gff, Ect4.gff, eIF6.gff, CG8646.gff, mael.gff, CG9643.gff, CG8931.gff, dgt5.gff, lqf.gff, csw.gff, CG9769.gff, m1.gff, dpr20.gff, daw.gff, ewg.gff, drosha.gff, CG9896.gff, CG9444.gff, Drl-2.gff, Cyp310a1.gff, fs(2)ltoPP43.gff, fz.gff, mip130.gff, Dip-B.gff, CSN7.gff, CG9192.gff, CG9578.gff, CG9804.gff, Gpb5.gff, CG8445.gff, Crc.gff, Dg.gff, eIF-1A.gff, E(bx).gff, CG8111.gff, CG9344.gff, CG8713.gff, CycK.gff, kermit.gff, Cyp305a1.gff, CG8232.gff, cv.gff, CR32730.gff, LSm-4.gff, Cpr97Ea.gff, Ela.gff, kon.gff, CG8289.gff, Cyp4d20.gff, gry.gff, CG8493.gff, CG8783.gff, eIF-2alpha.gff, His2A:CG33808.gff, Cyp309a2.gff, crol.gff, kdn.gff, GluRIIC.gff, HmgZ.gff, Gbeta5.gff, Fili.gff, GATAe.gff, Men.gff, KH1.gff, Exp6.gff, CG8949.gff, CG9836.gff, CG9548.gff, Esp.gff, kel.gff, CG9249.gff, chrb.gff, CREG.gff, KCNQ.gff, mib2.gff, dm.gff, CG8353.gff, Fpps.gff, CG9883.gff, fidipidine.gff, CG9917.gff, comm2.gff, FK506-bp2.gff, CG9523.gff, CG8745.gff, Cpr50Cb.gff, kn.gff, lic.gff, m4.gff, CG9090.gff, Cpr62Bb.gff, frc.gff, CG8629.gff, CG9376.gff, CG9515.gff, Fsh.gff, l(3)neo26.gff, janA.gff, cul-2.gff, Dbi.gff, epsilonCOP.gff, Mcm3.gff, dyl.gff, Gyk.gff, Fs(2)Ket.gff, ERp60.gff, Map60.gff, cib.gff, Dhh1.gff, lap.gff, CG8090.gff, CG8176.gff, CG8507.gff, CycC.gff, Mhcl.gff, CG8160.gff, chb.gff, Gp150.gff, Gad1.gff, jing.gff, mia.gff, CG8776.gff, His2Av.gff, DAT.gff, Fdh.gff, CG9825.gff, dUTPase.gff, Indy.gff, Mgstl.gff, growl.gff, lab.gff, GalNAc-T2.gff, jumu.gff, CPTI.gff, dpn.gff, Klp61F.gff, l(2)37Bb.gff, l(1)G0196.gff, Eip55E.gff, CG9682.gff, CG8272.gff, lig3.gff, CG9335.gff, Cont.gff, Doc2.gff, EcR.gff, l(2)k16918.gff, lama.gff, ko.gff, lack.gff, crp.gff, dei.gff, ken.gff, CG8600.gff, Fuca.gff, CG9572.gff, Jon25Bii.gff, CG8677.gff, l(2)k14710.gff, Ino80.gff, l(1)G0007.gff, CG8034.gff, CG8605.gff, CHOp24.gff, Edc3.gff, CG9104.gff, Frq2.gff, jp.gff, COQ7.gff, CG8420.gff, MED6.gff, Lis-1.gff, hop.gff, Gasp.gff, CG8563.gff, Mad.gff, CG9967.gff, Epac.gff, LCBP1.gff, CR41111.gff, M(2)21AB.gff, Klp3A.gff, Lrr47.gff, CG9754.gff, Fak56D.gff, Gcn2.gff, Karybeta3.gff, crn.gff, Ddx1.gff, ifc.gff, Elf.gff, dwg.gff, Coprox.gff, Cpr.gff, CG8889.gff, Jon99Ciii.gff, kis.gff, Clic.gff, CG9125.gff, CHORD.gff, eEF1delta.gff, jigr1.gff, MED20.gff, gish.gff, CG8833.gff, Dph5.gff, katanin-60.gff, CG8043.gff, CG8979.gff, disp.gff, geminin.gff, CHKov1.gff, lilli.gff, l(3)s1921.gff, e(y)3.gff, cm.gff, eIF3-S9.gff, Klp10A.gff, Gen.gff, Klp31E.gff, CG8417.gff, dhd.gff, CG8793.gff, DNApol-eta.gff, dpp.gff, Irp-1B.gff, dik.gff, CG8199.gff, l(3)82Fd.gff, CG8613.gff, EDTP.gff, GalNAc-T1.gff, Lkr.gff, mago.gff, M6.gff, Hexo2.gff, CG9890.gff, CG8768.gff, ft.gff, gatA.gff, CG8290.gff, cin.gff, Dox-A3.gff, Cyp6v1.gff, CYLD.gff, CG9300.gff, Haspin.gff, CG8503.gff, CG8323.gff, fas.gff, levy.gff, CG9391.gff, Dbp45A.gff, hdc.gff, CG8878.gff, CG8108.gff, CG8177.gff, Ef1gamma.gff, CG8388.gff, ect.gff, GRHRII.gff, Ip259.gff, CG9018.gff, Fancl.gff, hkl.gff, Fib.gff, kuz.gff, Mcm5.gff, CG9247.gff, CycD.gff, chic.gff, Gli.gff, Mcm7.gff, CG8009.gff, danr.gff, gammaTub23C.gff, dbr.gff, LvpD.gff, Cyt-b5-r.gff, gft.gff, CG9413.gff, Idgf1.gff, Hmu.gff, CG9272.gff, CG8778.gff, CG9066.gff, eIF-2beta.gff, ik2.gff, dah.gff, CG8920.gff, CG9629.gff, clt.gff, CG8312.gff, Mes2.gff, exu.gff, Gapdh1.gff, CG9134.gff, Est-6.gff, Hex-C.gff, Dok.gff, Lag1.gff, l(1)G0193.gff, CstF-50.gff, Egm.gff, kraken.gff, Elongin-B.gff, mew.gff, CG9140.gff, hth.gff, CG9386.gff, chp.gff, Fatp.gff, Fbxl4.gff, l(2)05510.gff, corn.gff, Ext2.gff, Gmer.gff, fz2.gff, Lsp1beta.gff, CG9953.gff, CtBP.gff, Cpr47Eg.gff, CG8560.gff, cos.gff, Gnf1.gff, jdp.gff, CG8066.gff, l(2)01289.gff, Mcm2.gff, CG8654.gff, deltaCOP.gff, CG8892.gff, CG9813.gff, gol.gff, cul-5.gff, Ipod.gff, CG9640.gff, Fit2.gff, CG9772.gff, chinmo.gff, Hsp67Bc.gff, Cks30A.gff, Cyp4g15.gff, EfTuM.gff, CG8939.gff, Iswi.gff, da.gff, CG8602.gff, CG8617.gff, Df31.gff, dor.gff, gbb.gff, CG9779.gff, Gyc76C.gff, Ho.gff, loqs.gff, CkIalpha.gff, exex.gff, FucTB.gff, Cka.gff, Gpdh.gff, exo70.gff, fdl.gff, dbo.gff, endos.gff, Gint3.gff, DAAM.gff, endoB.gff, gwl.gff, CG8193.gff, CG8451.gff, mas.gff, jog.gff, Mapmodulin.gff, CG8636.gff, ems.gff, lt.gff, CG8801.gff, CG9510.gff, kat80.gff, l(2)gd1.gff, l(3)87Df.gff, E(z).gff, CG8589.gff, l(2)06496.gff, CG8490.gff, Fur2.gff, Jupiter.gff, MAGE.gff, CG8321.gff, CG9581.gff, Cyp6a22.gff, Hop.gff, LamC.gff, CG9360.gff, Glut1.gff, MESK2.gff, CG8298.gff, CG8378.gff, cta.gff, feo.gff, imd.gff, cue.gff, JTBR.gff, eRF1.gff, Dgk.gff, CG9194.gff, me31B.gff, del.gff, cln3.gff, DIP2.gff, esc.gff, Hsc70Cb.gff, CG8965.gff, CG9849.gff, fal.gff, ird5.gff, Jon99Cii.gff, CG9992.gff, Fit1.gff, D19A.gff, Lmpt.gff, cpo.gff, dome.gff, l(2)35Di.gff, CG8852.gff, CR33963.gff, gk.gff, l(1)G0148.gff, Hira.gff, Klp67A.gff, CG9467.gff, mal.gff, fd96Cb.gff, Con.gff, CG9175.gff, Jon44E.gff, Lasp.gff, lid.gff, MBD-like.gff, CG8315.gff, decay.gff, Lgr3.gff, kar.gff, CG8795.gff, H2.0.gff, Hrb27C.gff, Lcp65Ag1.gff, l(1)G0230.gff, l(1)G0004.gff, Mgat1.gff, Gs1.gff, Hlc.gff, Cyp6a21.gff, CycB3.gff, EfSec.gff, Med.gff, MED31.gff, egl.gff, granny-smith.gff, dlt.gff, HLHm5.gff, CG9436.gff, CG9149.gff, mge.gff, Cpr47Ee.gff, l(1)10Bb.gff, Cyp6t1.gff, Cyt-c-p.gff, JhI-26.gff, Dis3.gff, larp.gff, MED1.gff, foi.gff, cry.gff, Gap1.gff, dnk.gff, Idh.gff, GXIVsPLA2.gff, CG9809.gff, Gs2.gff, e(r).gff, mei-S332.gff, CG9485.gff, CG9743.gff, Mcm6.gff, Gclc.gff, Gpo-1.gff, l(1)G0020.gff, l(2)k01209.gff, Eip75B.gff, l(1)G0222.gff, CG9812.gff, CG9757.gff, CG8029.gff, CG9498.gff, GlcT-1.gff, fra.gff, CG9267.gff, insv.gff, CG8798.gff, e.gff, Eaf6.gff, Frq1.gff, CG8568.gff, Dms.gff, CG9527.gff, laza.gff, CG9662.gff, Eip78C.gff, hgo.gff, l(2)01810.gff, CG9380.gff, Eip71CD.gff, CG8112.gff, CG9865.gff, exba.gff, GlcAT-P.gff, Irk2.gff, Mctp.gff, crl.gff, Cyp6u1.gff, HLH106.gff, ldlCp.gff, CG8180.gff, Cks85A.gff, Cyp4p3.gff, grh.gff, Marf.gff, CG8726.gff, Cpr100A.gff, crq.gff, His3.3B.gff, hfw.gff, Dbp80.gff, Gfr.gff, Dsp1.gff, gcm.gff, CG9922.gff, dap.gff, hts.gff, klu.gff, Lhr.gff, Got1.gff, Ipk1.gff, MCPH1.gff, CG9894.gff, CG9416.gff, DNApol-alpha50.gff, hkb.gff, l(3)neo18.gff, Fhos.gff, CG8531.gff, LvpH.gff, Mes-4.gff, CG8924.gff, cpsf.gff, Hrb87F.gff, Det.gff, epsin-like.gff, Gbeta76C.gff, Map205.gff, Exn.gff, fau.gff, Galpha49B.gff, Gip.gff, l(3)01239.gff, CG9601.gff, eff.gff, l(2)NC136.gff, Dap160.gff, CG8927.gff, CG8974.gff, CG9522.gff, Elp3.gff, Dr.gff, ear.gff, Hem.gff, CG8311.gff, CG8963.gff, CG8607.gff, CG9746.gff, Max.gff, CG9775.gff, dos.gff, ImpE2.gff, Kap-alpha1.gff, CG8960.gff, CG9737.gff, Crag.gff, e(y)1.gff, eIF-4E.gff, hyx.gff, CG9083.gff, Cypl.gff, cora.gff, eIF-5A.gff, LBR.gff, CG8885.gff, ECSIT.gff, Inos.gff, CG8791.gff, Ets65A.gff, hay.gff, KP78b.gff, l(2)37Cb.gff, mib1.gff, corto.gff, Jheh3.gff, CG8611.gff, CG8083.gff, Hr96.gff, jhamt.gff, CkIIalpha-i1.gff, G-ialpha65A.gff, kkv.gff, CG8003.gff, HtrA2.gff, Ilp4.gff, GATAd.gff, CG8665.gff, Cyp4s3.gff, iotaTry.gff, CG8188.gff, dob.gff, Dnr1.gff, CG9986.gff, MESR3.gff, CG9362.gff, Cpr49Ac.gff, metl.gff, dup.gff, drd.gff, CG9461.gff, CG9839.gff, HLHm3.gff, Madm.gff, cyp33.gff, GstE7.gff, gfA.gff, hyd.gff, Kap-alpha3.gff, CG9099.gff, eIF2B-beta.gff, Dif.gff, Irbp.gff, CG9837.gff, Ent3.gff, Lcp65Ag3.gff, CG9336.gff, Chrac-14.gff, drpr.gff, Glt.gff, mex1.gff, Lnk.gff, melt.gff, ct.gff, Dl.gff, MAN1.gff, CG9186.gff, CG8616.gff, fu2.gff, CG8170.gff, CoRest.gff, Fer2LCH.gff, Hrb98DE.gff, l(2)06225.gff, edl.gff, gnu.gff, Cpr78Cb.gff, eIF-4B.gff, GluRIIA.gff, MBD-R2.gff, CG8635.gff, CLIP-190.gff, gfzf.gff, lok.gff, CG9542.gff, Cyp309a1.gff, lola.gff, ligatin.gff, gus.gff, l(2)k14505.gff, MED8.gff, l(2)35Bd.gff, l(3)70Da.gff, Jon65Aiii.gff, Flo-2.gff, fok.gff, Cyp6a20.gff, Fmr1.gff, CG8444.gff, GstE9.gff, Drs.gff, CG9306.gff, Mdr65.gff, elB.gff, Mical.gff, CG8525.gff, Chrac-16.gff, CG8026.gff, fbl.gff, CG8234.gff, lig.gff, CG8443.gff, CG9338.gff, mats.gff, Hex-A.gff, Iap2.gff, Gfat2.gff, htl.gff, Lip1.gff, fh.gff, MED22.gff, lkb1.gff, GlyP.gff, CG8630.gff, crm.gff, CG8526.gff, CG9796.gff, ImpE1.gff, CG9095.gff, kek5.gff, kuk.gff, CG8830.gff, Crk.gff, CG9288.gff, cg.gff, dlp.gff, milt.gff, enc.gff, CG9400.gff, LanB2.gff, CG9084.gff, CG9630.gff, fog.gff, hig.gff, Idgf2.gff, hpo.gff, Es2.gff, CG8173.gff, CG8441.gff, fu.gff, csul.gff, eIF2B-alpha.gff, Ent1.gff, Mgat2.gff, Cyp4e2.gff, HmgD.gff, CkIIbeta.gff, Cpr65Av.gff, chm.gff, GstS1.gff, Cpr78Cc.gff, MED26.gff, Ef2b.gff, CRMP.gff, Chd3.gff, Int6.gff, CG8408.gff, Dh31.gff, CG9784.gff, Cyp6a17.gff, insc.gff, Chro.gff, CG8235.gff, CG8258.gff, CG9304.gff, CG8668.gff, Edem2.gff, GstE2.gff, meso18E.gff, mfas.gff, lmd.gff, Ddc.gff, dsh.gff, CG9172.gff, Fmo-1.gff, Jheh1.gff, Hsromega.gff, fzy.gff, CG8271.gff, chico.gff, Dsor1.gff, eya.gff, l(1)G0255.gff, CG9586.gff, Dhpr.gff, cnc.gff, l(1)G0232.gff, LpR1.gff, Gmap.gff, Ing3.gff, l(3)05822.gff, CG8303.gff, frtz.gff, Hsc70-3.gff, CG9934.gff, mask.gff, det.gff, GstE3.gff, Khc.gff, Mhc.gff, CG8064.gff, CG8336.gff, CG9399.gff, Cpr56F.gff, dalao.gff, eIF-4a.gff, hug.gff, ial.gff, CHIP.gff, Eaat1.gff, Cyt-b5.gff, ergic53.gff, CG9674.gff, CG9460.gff, GlcAT-S.gff, Glu-RI.gff, Dak1.gff, CG8230.gff, dream.gff, CG9904.gff, Lsp1gamma.gff, CG8132.gff, CG8891.gff, Kr.gff, EloA.gff, eIF4E-3.gff, ERR.gff, l(2)gl.gff, CR32205.gff, Csp.gff, kin17.gff, gw.gff, Karl.gff, Mer.gff, CG8233.gff, CG9243.gff, mbc.gff, CG8944.gff, Faf.gff, hb.gff, CG9426.gff, CSN5.gff, l(3)mbt.gff, CG7995.gff, CG8004.gff, Eaat2.gff, FucT6.gff, MED21.gff, cpb.gff, Lig4.gff, Meics.gff, CG8032.gff, CG9634.gff, CG9988.gff, miple2.gff, CG8359.gff, klar.gff, CG9989.gff, Cpr97Eb.gff, Droj2.gff, Ephrin.gff, fax.gff, l(3)j2D3.gff, Cpr65Ec.gff, Keap1.gff, dpr10.gff, HERC2.gff, Cha.gff, l(2)k05819.gff, CG8446.gff, cv-c.gff, CG9706.gff, exd.gff, Las.gff, gro.gff, Jon99Ci.gff, MED10.gff, Cpr49Ae.gff, Fibp.gff, l(1)dd4.gff, Mdr49.gff, CG8128.gff, Cyp6a13.gff, emc.gff, Cys.gff, grn.gff, CG9000.gff, DNApol-alpha73.gff, Dp1.gff, eIF4AIII.gff, CG8152.gff, CG9098.gff, Dip3.gff, CSN3.gff, MED30.gff, CG8888.gff, CG8839.gff, Hdac3.gff, CG9302.gff, Dox-A2.gff, Dyrk3.gff, Cpr31A.gff, CycT.gff, Grip163.gff, Cyp49a1.gff, dpa.gff, MED25.gff, CG8538.gff, l(1)G0334.gff, CG8414.gff, CG9044.gff, CG9331.gff, CkIIalpha.gff, h.gff, CG8405.gff, ds.gff, Gtp-bp.gff, CG9993.gff, l(2)37Cc.gff, gsb-n.gff, CG8245.gff, CG8483.gff, Hexo1.gff, His1:CG31617.gff, Cnx99A.gff, DnaJ-1.gff, GV1.gff, dj-1beta.gff, Hmr.gff, Dcp-1.gff, l(2)03709.gff, CG8707.gff, CG9795.gff, CG8301.gff, CG9517.gff, ebi.gff, Gprk2.gff, CG8135.gff, CG8172.gff, CG8239.gff, CG9144.gff, Fas3.gff, CG9171.gff, CycA.gff, Dnz1.gff, emp.gff, Chc.gff, FK506-bp1.gff, CG9740.gff, mei-P26.gff, CG8533.gff, mbl.gff, CG9205.gff, CG8320.gff, CG8632.gff, clumsy.gff, fng.gff, l(1)1Bi.gff, Dhod.gff, mab-21.gff, cwo.gff, CycE.gff, CG9427.gff, CG9062.gff, grk.gff, Cyp4d1.gff, CG8594.gff, gkt.gff, l(3)02640.gff, Ets98B.gff, Eno.gff, hang.gff, CG8481.gff, CG8907.gff, CG9945.gff, Cpr66D.gff, cpx.gff, Corp.gff, garz.gff, Irc.gff, CG9339.gff, Incenp.gff, Lcp65Ab2.gff, gammaCop.gff, ics.gff, CG8209.gff, CG8910.gff, Doc3.gff, m2.gff, Cyp9b2.gff, CG8010.gff, Cog3.gff, CG8436.gff, Gdh.gff, CR32078.gff, Jafrac2.gff, FKBP59.gff, CG9468.gff, Gfat1.gff, CG9448.gff, chn.gff, hoip.gff, La.gff, CG8165.gff, Hs3st-A.gff, CycB.gff, Cyp12d1-p.gff, CG8331.gff, CrebA.gff, dan.gff, dgt1.gff, fne.gff, hk.gff, jbug.gff, Dip-C.gff, CG8080.gff, Hsp83.gff, CG9509.gff, His2A:CG31618.gff, l(2)dtl.gff, ltd.gff, Grip128.gff, Coq2.gff, HP1b.gff, fy.gff, Fem-1.gff, CR41594.gff, CG8861.gff, CkIIalpha-i3.gff, Gug.gff, CG8678.gff, CG9596.gff, CTCF.gff, Dp.gff, Hsf.gff, Idgf4.gff, Lcch3.gff, dgt2.gff, fu12.gff, CG8728.gff, CG8121.gff, gammaTub37C.gff, Hip.gff, Cortactin.gff, CG8372.gff, cl.gff, Eip74EF.gff, l(2)44DEa.gff, Hsp68.gff, lgs.gff, CG9512.gff, HLH54F.gff, Dgkepsilon.gff, CG8929.gff, cul-4.gff, eIF5.gff, Gap69C.gff, Cyp313b1.gff, CG9003.gff, CG9977.gff, fj.gff, GstE6.gff, CG8116.gff, CG8773.gff, Cyt-c-d.gff, H.gff, lbm.gff, Hmgcr.gff, CG9330.gff, Dbp73D.gff, l(2)efl.gff, GM130.gff, CG8449.gff, CHES-1-like.gff, Hpr1.gff, His4r.gff, CG8207.gff, Ef1alpha48D.gff, Gp93.gff, Idgf3.gff, mbo.gff, l(3)neo38.gff, Lsd-1.gff, homer.gff, Hrp59.gff, G-oalpha47A.gff, CG8785.gff, Cyp18a1.gff, CG8386.gff, Gs1l.gff, Chmp1.gff, D19B.gff, Cyp1.gff, CG9573.gff, CG9960.gff, lmg.gff, L.gff, igl.gff, CG8455.gff, ecd.gff, CG9356.gff, dlg1.gff, drongo.gff, CG8223.gff, dally.gff, ck.gff, dmt.gff, l(1)G0269.gff, comm.gff, dnt.gff, kst.gff, CG9164.gff, chrw.gff, eco.gff, HP1c.gff, dnc.gff, CG8790.gff, Jheh2.gff, CG8549.gff, l(2)k07824.gff, GlcAT-I.gff, Liprin-alpha.gff, MESR6.gff, Fmo-2.gff, CG9319.gff, LvpL.gff, l(3)03670.gff, CG8291.gff, Cyp4p1.gff, grau.gff, CG8243.gff, Him.gff, defl.gff, drm.gff, GckIII.gff, flfl.gff, Mio.gff, CG8738.gff, dpr18.gff, hep.gff, Drp1.gff, eIF-3p66.gff, Gld.gff, heix.gff, l(2)08717.gff, CG9791.gff, CG9518.gff, IP3K1.gff, CG8184.gff, CG9568.gff, dgo.gff, Cyp28a5.gff, emb.gff, CG9394.gff, fray.gff, Fmrf.gff, l(3)04053.gff, CG8036.gff, epsilonTry.gff, CG9672.gff, hbs.gff, HLHmbeta.gff, CG9213.gff, Cpr23B.gff, Marcal1.gff, eca.gff, CG9941.gff, CG8366.gff, didum.gff, DNApol-delta.gff, Cp190.gff, CG9117.gff, CG9686.gff, l(3)L1231.gff, HBS1.gff, Jon66Ci.gff, CG7997.gff, lolal.gff, CG9004.gff, klg.gff, E(Pc).gff, IM10.gff, eIF3-S10.gff, His3.3A.gff, CG9132.gff, Cyp6a19.gff, for.gff, CG9867.gff, Kmn1.gff, en.gff, CG8850.gff, CG9990.gff, MAPk-Ak2.gff, Dscam.gff, CG9667.gff, Dmn.gff, Fim.gff, MESR4.gff, l(1)G0095.gff, hoe1.gff, colt.gff, how.gff, gukh.gff, Lap1.gff, Cyp6a23.gff, DNaseII.gff, CG9232.gff, hd.gff, ldbr.gff, Hil.gff, lea.gff, GstD4.gff, chif.gff, Lcp65Ag2.gff, CG8765.gff, Ge-1.gff, CG8841.gff, CG8031.gff, DMAP1.gff, mip120.gff, CG9947.gff, Cyp4g1.gff, CG9636.gff, Eps-15.gff, eyg.gff, Hsp60.gff, CG9603.gff, Ect3.gff, DppIII.gff, Gef64C.gff, CG9109.gff, CG9650.gff, Fer1HCH.gff, Cpr65Ax1.gff, mdy.gff, CG8552.gff, ftz.gff, hrg.gff, CG7998.gff, Jafrac1.gff, l(1)G0431.gff, MED16.gff, ChLD3.gff, CG8460.gff, CG9226.gff, CG9328.gff, Gel.gff, CG9921.gff, fz3.gff, jar.gff, l(2)s5379.gff, Cyp4ad1.gff, ImpL1.gff, Hph.gff, dl.gff, lark.gff, CG8027.gff, esg.gff, l(1)sc.gff, CG9797.gff, cpa.gff, dsx.gff, Doa.gff, CG9153.gff, ec.gff, Eip63E.gff, Hip14.gff, glob1.gff, CG8547.gff, Cyp4c3.gff, mars.gff, l(1)G0144.gff, JhI-21.gff, Chd64.gff, CG8097.gff, CG8743.gff, DDB1.gff, Mcr.gff, CG9723.gff, Grip.gff, CG8500.gff, CG8028.gff, CSN1b.gff, dgt6.gff, lwr.gff, CG8206.gff, icln.gff, fus.gff, CG9866.gff, fs(1)N.gff, Lcp65Ac.gff, CG9684.gff, Hnf4.gff, MICAL-like.gff, drl.gff, Gapdh2.gff, Cht2.gff, Hdm.gff, d4.gff, Hus1-like.gff, CG8671.gff, Mct1.gff, Mdh.gff, Flo.gff, Hcs.gff, ferrochelatase.gff, l(1)G0289.gff, LanB1.gff, CG9323.gff, CG9437.gff, Jon65Aiv.gff, mid.gff, CG9008.gff, cn.gff, glec.gff, CG8079.gff, Ef1beta.gff, CG8675.gff, CG8202.gff, comt.gff, DIP1.gff, CG9384.gff, GstD1.gff, Cyp6a8.gff, CG8092.gff, CG9877.gff, eIF4G.gff, Fer1.gff, Dad.gff, mbf1.gff, Mat1.gff, CG9135.gff, cid.gff, lds.gff, mip40.gff, Ef1alpha100E.gff, MED24.gff, gb.gff, CG9451.gff, eas.gff, Deaf1.gff, CG8058.gff, Hmgs.gff, MED19.gff, gt.gff, l(1)G0469.gff, KaiRIA.gff, CG9609.gff, Cht5.gff, ctp.gff, glo.gff, KrT95D.gff, king-tubby.gff, knrl.gff, CG8485.gff, Faa.gff, lin-28.gff, CG9782.gff, Ero1L.gff, Cyp4d14.gff, loj.gff, CG9143.gff, CG9911.gff, mav.gff, Cht11.gff, gogo.gff, koko.gff, CG9628.gff, glu.gff, in.gff, Gga.gff, Chit.gff, fliI.gff, Lam.gff, miple.gff, cni.gff, eIF3-S8.gff, egr.gff, Cyp6d4.gff, CG8545.gff, fbp.gff, Ipp.gff, CG8494.gff, Hs6st.gff, CG9752.gff, DNApol-iota.gff, gek.gff, gpp.gff, lace.gff, dbe.gff, ena.gff, Csat.gff, CG8078.gff, CG9666.gff, CHKov2.gff, Cpr64Ad.gff, ed.gff, egh.gff, Hel89B.gff, CG8786.gff, CG9422.gff, Cyp9f2.gff, exo84.gff, l(1)G0320.gff, CG8788.gff, Dip2.gff, Jon99Fii.gff, CG9246.gff, CG9320.gff, mad2.gff, iHog.gff, gcl.gff, Gadd45.gff, Gas41.gff, Cyp28d1.gff, Dim1.gff, Dcp1.gff, CG8478.gff, Gclm.gff, Gos28.gff, fl(2)d.gff, Lk6.gff, Cyp6d5.gff, CG9056.gff, galectin.gff, CG9801.gff, E2f2.gff, l(3)07882.gff, CSN6.gff, CG9641.gff, CR30009.gff, Grip71.gff, Grip75.gff, l(2)37Cd.gff, Cyp304a1.gff, Cyp12a4.gff, Hr46.gff, Hr39.gff, CG9411.gff, Ciao1.gff, Hsp27.gff, CG9281.gff, Jon99Fi.gff, CG8005.gff, CG8866.gff, CG8145.gff, CoVa.gff, CG8461.gff, inx2.gff, Lim3.gff, CG9503.gff, lin.gff, fat-spondin.gff, Csk.gff, CG8306.gff, CG9773.gff, egg.gff, flw.gff, Ice.gff, Mbs.gff, eIF-3p40.gff, Grip84.gff, CG8042.gff, E2f.gff, Ctr1B.gff
1043 5'RACE 454 sequencing - pool 4 Celniker Celniker RACE gene model Reactions=289993 Drosophila melanogaster y; cn bw sp early embryonic cell, blastoderm cell, gastrula cell embryo: cleavage stage, extended germ band stage, gastrula stage, pre-blastoderm stage 9/14/09 2/14/10 reviewing mRpL2.gff, pkaap.gff, Traf4.gff, RpL4.gff, Pde11.gff, Peritrophin-A.gff, Sep2.gff, Spz3.gff, zfh2.gff, Pi3K59F.gff, yps.gff, RfC40.gff, TpnC73F.gff, RpL29.gff, Tace.gff, RpS18.gff, pasha.gff, Rab8.gff, pain.gff, Spt-I.gff, Mlc1.gff, nvy.gff, sle.gff, roq.gff, nimB4.gff, sec10.gff, Pcf11.gff, Orc6.gff, rdo.gff, park.gff, sina.gff, Osbp.gff, Upf2.gff, Sirt7.gff, sm.gff, Neu3.gff, NELF-B.gff, PpD3.gff, Spat.gff, spdo.gff, Scamp.gff, mRpL37.gff, N.gff, SelD.gff, mRpL41.gff, MTF-1.gff, mthl9.gff, Ugt35a.gff, Usp36.gff, nrv2.gff, Pcmt.gff, pen.gff, RpS24.gff, SNCF.gff, Xpd.gff, mrj.gff, Surf6.gff, Mlc-c.gff, Pdf.gff, mRpS17.gff, unc-119.gff, pxb.gff, spn-F.gff, S2P.gff, Tig.gff, Tom34.gff, O-fut1.gff, Rab6.gff, Ranbp16.gff, Top3beta.gff, shrb.gff, tan.gff, Ugt37b1.gff, Timp.gff, Ser6.gff, vls.gff, mus201.gff, Tina-1.gff, RabX6.gff, spri.gff, Mipp2.gff, pgant3.gff, Taf12.gff, Uba1.gff, smt3.gff, tws.gff, Tom.gff, Set2.gff, pav.gff, Rbf.gff, olf186-M.gff, SC35.gff, nuf.gff, Vha68-2.gff, Pk17E.gff, RhoGAP16F.gff, Myb.gff, Taf4.gff, Srp14.gff, puc.gff, Sac1.gff, Spx.gff, Nnf1b.gff, Pak3.gff, RpL13.gff, pr-set7.gff, Su(var)2-10.gff, RpS6.gff, yl.gff, otu.gff, sub.gff, mof.gff, SMC1.gff, swm.gff, wibg.gff, slbo.gff, Mpcp.gff, nAcRbeta-96A.gff, Sep4.gff, SRPK.gff, Ogt.gff, rdx.gff, Nmda1.gff, Sirt2.gff, TwdlBeta.gff, RpII18.gff, MP1.gff, NiPp1.gff, tim.gff, twe.gff, snRNP70K.gff, stmA.gff, tral.gff, mRpS5.gff, Wnt2.gff, sta.gff, tou.gff, U2af50.gff, NC2beta.gff, rb.gff, tun.gff, sick.gff, ttm50.gff, RnpS1.gff, robl.gff, PGRP-LE.gff, Spp.gff, mRpL23.gff, Tis11.gff, tmod.gff, skpA.gff, neuroligin.gff, wal.gff, Ndg.gff, Sp1.gff, Roc2.gff, PRL-1.gff, wfs1.gff, Mkp.gff, pbl.gff, Zpr1.gff, Nak.gff, RnrS.gff, thoc5.gff, Pi3K21B.gff, RpII215.gff, ppan.gff, path.gff, Rpb8.gff, TepII.gff, Tpr2.gff, Tsp42Eg.gff, sec3.gff, mirr.gff, pot.gff, YT521-B.gff, Ptp10D.gff, Tsp42Eh.gff, Sh.gff, Tsp2A.gff, mRpL39.gff, Taf1.gff, tup.gff, Mpk2.gff, Tsp86D.gff, Vps20.gff, RFeSP.gff, SsRbeta.gff, Tak1.gff, mtacp1.gff, Oatp33Eb.gff, pwn.gff, NHP2.gff, pho.gff, Vha44.gff, sec5.gff, Sry-delta.gff, tex.gff, retm.gff, Rab9.gff, Tre1.gff, Rab35.gff, rig.gff, Tango7.gff, wkd.gff, pix.gff, Spred.gff, TM4SF.gff, RpL3.gff, Sox21b.gff, Oat.gff, Pgm.gff, ProsMA5.gff, Shaw.gff, toy.gff, sbb.gff, Obp44a.gff, ytr.gff, mRpL11.gff, Rpd3.gff, mre11.gff, mRpL18.gff, mus301.gff, Tsp74F.gff, Prp18.gff, mRpL28.gff, RpS10b.gff, Pde1c.gff, sec15.gff, stau.gff, Pros25.gff, mRpL55.gff, UbcD10.gff, Patj.gff, Ptp61F.gff, TfIIA-S.gff, Tfb4.gff, PH4alphaPV.gff, Prosbeta5.gff, Spn27A.gff, nes.gff, scw.gff, msl-2.gff, wdb.gff, Tim9b.gff, pod1.gff, Taf6.gff, Smg6.gff, Neb-cGP.gff, scu.gff, mRpS6.gff, Noa36.gff, Tsp26A.gff, Nup98.gff, rho.gff, Pop2.gff, Sop2.gff, Osi19.gff, Sas10.gff, tef.gff, Rbp1.gff, Ptr.gff, scramb1.gff, syt.gff, Psa.gff, wun.gff, Pat1.gff, sage.gff, vig.gff, Tm2.gff, Trn-SR.gff, scf.gff, Msr-110.gff, Pdk.gff, Pbp45.gff, pncr004:X.gff, tomosyn.gff, NetA.gff, Rbsn.gff, Nup214.gff, Orct2.gff, Osi18.gff, yellow-e.gff, Pino.gff, ppl.gff, Mip.gff, RpS7.gff, mRpL51.gff, Ork1.gff, RpLP0.gff, nkd.gff, Syx1A.gff, P58IPK.gff, scra.gff, SP2353.gff, Tfb2.gff, p24-2.gff, PQBP-1.gff, Nedd4.gff, Spase22-23.gff, Spt5.gff, Osi7.gff, sax.gff, Pomp.gff, spi.gff, pgc.gff, Ugt86Da.gff, mus304.gff, Ntl.gff, Ptpmeg.gff, Mtch.gff, PHGPx.gff, Pink1.gff, Trf.gff, RpL27.gff, RhoL.gff, Rab30.gff, spel1.gff, yellow-e3.gff, Pka-R2.gff, Obp99c.gff, TwdlF.gff, tw.gff, sano.gff, Slip1.gff, Prosalpha7.gff, mura.gff, noc.gff, numb.gff, X11L.gff, RhoBTB.gff, mRpL49.gff, sprt.gff, sra.gff, syd.gff, Mtr3.gff, RpL35.gff, RpL37A.gff, vav.gff, RpS15.gff, m.gff, Uch.gff, svr.gff, Zip3.gff, Plc21C.gff, Traf6.gff, Nup154.gff, Pax.gff, Sdc.gff, Sec61beta.gff, Syx5.gff, U26.gff, pio.gff, Tb.gff, snama.gff, Socs44A.gff, Skeletor.gff, Yp3.gff, nmdyn-D7.gff, scramb2.gff, wg.gff, Nrt.gff, rumi.gff, slif.gff, vlc.gff, nrv1.gff, TfIIS.gff, wrapper.gff, Psi.gff, Su(var)3-7.gff, wb.gff, Nle.gff, Myt1.gff, wek.gff, spn-B.gff, UbcD2.gff, Rel.gff, sofe.gff, Snap.gff, p130CAS.gff, smi35A.gff, msb1l.gff, Obp56a.gff, SmD3.gff, Pkn.gff, Rsf1.gff, Oatp33Ea.gff, wor.gff, ome.gff, XNP.gff, RpL12.gff, mRpL16.gff, mRpL21.gff, mRpL53.gff, PhKgamma.gff, Rep2.gff, ss.gff, Rac1.gff, Oda.gff, stumps.gff, Tango13.gff, Rm62.gff, Pcd.gff, skf.gff, Stat92E.gff, RpS5b.gff, wdp.gff, Mtor.gff, Rrp45.gff, Osi17.gff, RpA-70.gff, mRpL19.gff, RpL38.gff, tacc.gff, mRpL48.gff, yellow-h.gff, Mmp2.gff, Rapgap1.gff, Nelf-E.gff, mr.gff, Pkg21D.gff, Tom20.gff, vas.gff, su(r).gff, RpL26.gff, mRpS23.gff, Rga.gff, SRm160.gff, Tsp42Ea.gff, Pez.gff, pall.gff, rtGEF.gff, Nep1.gff, Rpb5.gff, PPP4R2r.gff, scat.gff, slmo.gff, mRpS30.gff, peb.gff, Pkcdelta.gff, Uba2.gff, Pros28.1.gff, rdgBbeta.gff, Tsp39D.gff, wgn.gff, PEK.gff, SP1173.gff, Ptp69D.gff, Mp20.gff, Pld.gff, Spn4.gff, stc.gff, Pten.gff, Ror.gff, Neurochondrin.gff, scaf6.gff, TXBP181-like.gff, RluA-1.gff, RpL36.gff, phr.gff, UbcD4.gff, SpdS.gff, Osi15.gff, Psf3.gff, Vap-33-1.gff, Surf4.gff, nod.gff, Obp18a.gff, Top2.gff, Ranbp9.gff, Ranbp21.gff, tos.gff, unk.gff, Scsalpha.gff, Tcp-1eta.gff, Tsp42Eq.gff, Sobp.gff, xl6.gff, Mst85C.gff, Sin1.gff, Nos.gff, Prx5037.gff, RpL10Ab.gff, Tgt.gff, tld.gff, oaf.gff, SdhB.gff, sut1.gff, mus209.gff, ppk.gff, sn.gff, thoc6.gff, yu.gff, Pu.gff, ttv.gff, Sply.gff, Pp1-87B.gff, RpS5a.gff, org-1.gff, Smg5.gff, raps.gff, Rep1.gff, out.gff, pgant5.gff, RpS30.gff, wee.gff, Mitf.gff, pan.gff, pon.gff, Sras.gff, noi.gff, Ptpa.gff, trus.gff, Tsp96F.gff, Vps25.gff, Spase12.gff, PP2A-B'.gff, pAbp.gff, sqd.gff, RpS20.gff, tin.gff, mri.gff, pck.gff, Prm.gff, p120ctn.gff, SP71.gff, mkg-p.gff, Pbp95.gff, Suv4-20.gff, nrv3.gff, Optix.gff, RpL37a.gff, sca.gff, Ubx.gff, MtnA.gff, Tsp42Ed.gff, mtm.gff, sda.gff, Vha16.gff, Mlp84B.gff, Rab7.gff, tum.gff, Nhe3.gff, mrt.gff, Sh3beta.gff, skl.gff, TwdlT.gff, Vha100-2.gff, SytIV.gff, mus210.gff, SerT.gff, spag.gff, pnut.gff, Rpt3.gff, Shal.gff, TwdlG.gff, mRpL50.gff, Nnf1a.gff, Rtf1.gff, Wnt4.gff, Prosbeta3.gff, RNaseX25.gff, tipE.gff, trc.gff, Ubqn.gff, mira.gff, Pof.gff, Usp7.gff, nAcRbeta-21C.gff, Trn.gff, NTPase.gff, Psn.gff, SmB.gff, Ubi-p5E.gff, qkr58E-2.gff, RpII15.gff, Nipsnap.gff, Spc105R.gff, ND23.gff, stops.gff, rpk.gff, Tsp42Ej.gff, Sos.gff, sec23.gff, tra2.gff, morgue.gff, simj.gff, ssp2.gff, siz.gff, RpL27A.gff, Odc1.gff, mthl3.gff, Prx2540-2.gff, Rad17.gff, Taf13.gff, Mov34.gff, Smn.gff, Tango4.gff, Mtp.gff, su(s).gff, Vps36.gff, TppII.gff, v.gff, oc.gff, Ripalpha.gff, slik.gff, wus.gff, Proct.gff, Trap1.gff, TwdlE.gff, pUf68.gff, Rab14.gff, Snm1.gff, Sr-CI.gff, Nep4.gff, Thd1.gff, TwdlP.gff, NitFhit.gff, Syx7.gff, Zyx102EF.gff, Oatp58Dc.gff, zen2.gff, Rad21.gff, RpL23.gff, uri.gff, Myo31DF.gff, Nrg.gff, pcs.gff, raw.gff, pinta.gff, rhi.gff, sop.gff, tsg.gff, yellow-c.gff, sug.gff, moody.gff, muskelin.gff, Poxm.gff, vvl.gff, Vha68-1.gff, Rrp1.gff, Scs-fp.gff, Sin.gff, spn-E.gff, par-6.gff, Myo95E.gff, Tpi.gff, pont.gff, Rab10.gff, Tsp29Fa.gff, tth.gff, Tao-1.gff, Pp2B-14D.gff, rux.gff, Rpn6.gff, Tal.gff, Tctp.gff, TfIIFbeta.gff, Xbp1.gff, mRpL12.gff, sav.gff, Sfmbt.gff, SNF1A.gff, Taf2.gff, tap.gff, RhoGAP92B.gff, Ssdp.gff, mit(1)15.gff, PebIII.gff, mus81.gff, Oscp.gff, Papst2.gff, Rbp2.gff, slim.gff, tankyrase.gff, TER94.gff, NPFR76F.gff, SrpRbeta.gff, wtrw.gff, Su(var)2-HP2.gff, rost.gff, z.gff, Pak.gff, PGRP-LD.gff, sno.gff, Nup107.gff, p38b.gff, step.gff, Snoo.gff, nimC4.gff, Pitslre.gff, Pp2A-29B.gff, VhaM9.7-2.gff, vari.gff, Oatp30B.gff, VhaSFD.gff, mRpL35.gff, Pmm45A.gff, santa-maria.gff, Top1.gff, Tsp42El.gff, tsr.gff, zen.gff, qm.gff, RpL35A.gff, Ugt58Fa.gff, mtTFB2.gff, Ufd1-like.gff, Rassf.gff, shtd.gff, mor.gff, Msh6.gff, porin.gff, Tsp42Eo.gff, otp.gff, RpL17.gff, Syx18.gff, SP2637.gff, RpS3A.gff, yip2.gff, RpS3.gff, mRpL15.gff, mRpL44.gff, Rab1.gff, ncd.gff, Nhe2.gff, Pdp.gff, MTA1-like.gff, Pis.gff, Rala.gff, Rnp4F.gff, Nckx30C.gff, RpL34b.gff, Vha55.gff, scrt.gff, TwdlM.gff, Unc-76.gff, pds5.gff, ScpX.gff, sec63.gff, Scgbeta.gff, stet.gff, timeout.gff, Pms2.gff, TSG101.gff, RpS16.gff, VhaM9.7-1.gff, nudC.gff, Plip.gff, Mipp1.gff, RpL14.gff, vsg.gff, Mlc2.gff, mTTF.gff, Pgk.gff, n-syb.gff, pzg.gff, sPLA2.gff, Tsp.gff, RpI135.gff, pgant8.gff, POSH.gff, snRNP2.gff, mspo.gff, MRG15.gff, Pka-C1.gff, prd.gff, Srp72.gff, Rh50.gff, RhoGAP68F.gff, mRpS9.gff, Sucb.gff, Mvl.gff, wls.gff, Z600.gff, odd.gff, p.gff, rt.gff, tam.gff, msl-3.gff, Nha1.gff, S6k.gff, Nc.gff, pit.gff, Rx.gff, Mnt.gff, Rbf2.gff, RpIII128.gff, vri.gff, snf.gff, Sod.gff, spn-D.gff, mRpL4.gff, oxt.gff, ran.gff, wupA.gff, Pal.gff, tst.gff, unc79.gff, sced.gff, SuUR.gff, unpg.gff, TfIIFalpha.gff, pncr003:2L.gff, rogdi.gff, Rrp46.gff, Taf8.gff, Thor.gff, phl.gff, RhoGEF4.gff, sdk.gff, Rpt1.gff, Tom70.gff, SIFR.gff, ras.gff, mth.gff, Ric.gff, Pfrx.gff, RpL6.gff, SelR.gff, osk.gff, PIP5K59B.gff, mRpL40.gff, Pen.gff, nord.gff, Sema-1a.gff, nmd.gff, yellow-b.gff, stv.gff, mtrm.gff, Mys45A.gff, wntD.gff, Myd88.gff, Tsc1.gff, Tsp97E.gff, woc.gff, Osi2.gff, Pk61C.gff, Osi12.gff, Patr-1.gff, Pxn.gff, TBPH.gff, Tektin-C.gff, TwdlL.gff, XRCC1.gff, Obp56d.gff, Rpn12.gff, mRpS21.gff, pn.gff, zf30C.gff, UK114.gff, Ppox.gff, regucalcin.gff, nAcRalpha-80B.gff, ovo.gff, Rack1.gff, Roc1a.gff, mts.gff, RpL22.gff, Nuf2.gff, sni.gff, RpL40.gff, Osi20.gff, SelG.gff, ncm.gff, RpS23.gff, Srp68.gff, Wnt5.gff, retn.gff, ry.gff, RN-tre.gff, Oatp26F.gff, Phk-3.gff, ref(2)P.gff, Rho1.gff, RpL5.gff, Tl.gff, slv.gff, nonA-l.gff, pigeon.gff, PKD.gff, Tbp-1.gff, Trxr-1.gff, Rb97D.gff, UBL3.gff, PH4alphaEFB.gff, Rrp6.gff, Rya-r44F.gff, Vha100-1.gff, Rac2.gff, Rap2l.gff, ninaA.gff, PGRP-LC.gff, Pros26.4.gff, shi.gff, Vrp1.gff, tau.gff, mRpL14.gff, TORC.gff, sima.gff, Ubc-E2H.gff, nAcRbeta-64B.gff, NP15.6.gff, Sb.gff, Sir2.gff, vap.gff, Past1.gff, Pka-R1.gff, Srp54k.gff, twf.gff, mRpL43.gff, Paf-AHalpha.gff, pcl.gff, StIP.gff, Mob2.gff, Paip2.gff, mthl14.gff, RpL30.gff, Spase18-21.gff, Ppt1.gff, Spt3.gff, Sur-8.gff, Sxl.gff, sna.gff, mus308.gff, Sap47.gff, Orc4.gff, pea.gff, Roe1.gff, REG.gff, Ski6.gff, Psf2.gff, Rad9.gff, uzip.gff, Slh.gff, TFAM.gff, vimar.gff, Spec2.gff, Sry-alpha.gff, ZnT63C.gff, RpS27.gff, okr.gff, Treh.gff, mRpS18B.gff, Nmdar1.gff, pgant2.gff, thetaTry.gff, zwilch.gff, Pros45.gff, ths.gff, serp.gff, nimB1.gff, Oaz.gff, slgA.gff, spen.gff, phtf.gff, pxt.gff, pygo.gff, RpL39.gff, sec13.gff, toe.gff, Rlip.gff, Tequila.gff, yemalpha.gff, Rab23.gff, Stim.gff, tlk.gff, Traf-like.gff, Uev1A.gff, mRpL45.gff, msi.gff, nos.gff, rib.gff, spn-A.gff, tsl.gff, Rab40.gff, Mpp6.gff, or.gff, RpS8.gff, Phax.gff, Tango5.gff, Oscillin.gff, ZIP1.gff, png.gff, Sr-CII.gff, mRpS2.gff, Miro.gff, mRpL30.gff, pita.gff, Rme-8.gff, Srp54.gff, Taf10.gff, Nep3.gff, srp.gff, Spase25.gff, twi.gff, Rpn7.gff, tho2.gff, Ulp1.gff, ptc.gff, Vps16B.gff, Nxt1.gff, nito.gff, Osi14.gff, Ost48.gff, prominin-like.gff, PTP-ER.gff, RhoGEF3.gff, Tango6.gff, Toll-6.gff, zetaCOP.gff, mmd.gff, RpL41.gff, RpS11.gff, Rab39.gff, Rtnl1.gff, Pcaf.gff, Pkc98E.gff, sip2.gff, TwdlH.gff, vih.gff, Nmt.gff, NPC1.gff, S.gff, Tk.gff, Nipped-A.gff, Prosbeta4.gff, tey.gff, U2A.gff, TpnC25D.gff, mRpL17.gff, RpS27A.gff, Rdl.gff, rols.gff, Rpn5.gff, Prat.gff, Rab27.gff, Sirt4.gff, WASp.gff, Mkk4.gff, obst-E.gff, sei.gff, Upf1.gff, Mms19.gff, Pep.gff, SF2.gff, NUCB1.gff, Orc2.gff, Pi3K68D.gff, usp.gff, mRpS34.gff, Mtl.gff, spo.gff, pnt.gff, Obp49a.gff, RhoGAP54D.gff, Slbp.gff, Trl.gff, Rab11.gff, nxf2.gff, pll.gff, stck.gff, torp4a.gff, sdt.gff, Ndae1.gff, oa2.gff, RpL7.gff, Syt7.gff, Ser.gff, Mlp60A.gff, nonA.gff, Vhl.gff, Ntf-2.gff, pim.gff, Sep5.gff, Rca1.gff, synaptogyrin.gff, pyd.gff, Tkr.gff, Nplp2.gff, NtR.gff, wdn.gff, Tap42.gff, veli.gff, nompA.gff, sinu.gff, zetaTry.gff, Sec61gamma.gff, Taf7.gff, und.gff, mthl5.gff, TwdlW.gff, PH4alphaSG2.gff, Su(var)205.gff, Ugt36Bc.gff, nAcRalpha-96Ab.gff, Pp1alpha-96A.gff, Su(P).gff, polo.gff, sob.gff, Obp99b.gff, RpII140.gff, RpL24.gff, p53.gff, Vha26.gff, Rlb1.gff, RpL23A.gff, Tapdelta.gff, TpnC47D.gff, Pros54.gff, Rpn11.gff, Mis12.gff, rin.gff, Sgt.gff, mtSSB.gff, viaf.gff, ptr.gff, nopo.gff, rho-7.gff, TwdlY.gff, prel.gff, Sur.gff, Rbm13.gff, Rev1.gff, Syx16.gff, pes.gff, vkg.gff, PGRP-LF.gff, Snx6.gff, scyl.gff, slp1.gff, SNF4Agamma.gff, Trim9.gff, san.gff, mys.gff, pie.gff, Sk2.gff, Nap1.gff, Neos.gff, wda.gff, Pp4-19C.gff, T3dh.gff, sesB.gff, nmo.gff, Shc.gff, psq.gff, Tsp42Ee.gff, shot.gff, net.gff, PNGase.gff, Pnn.gff, tgo.gff, Tsf2.gff, RpL9.gff, Tcp-1zeta.gff, Osi9.gff, RnrL.gff, Sry-beta.gff, sqh.gff, TfIIEalpha.gff, U2af38.gff, mRpL9.gff, Nipped-B.gff, Scp2.gff, zip.gff, RpL15.gff, PNUTS.gff, Srp9.gff, Mlh1.gff, msk.gff, NC2alpha.gff, Smox.gff, Mnn1.gff, Nhe1.gff, olf413.gff, RpS14a.gff, Ubp64E.gff, up.gff, qkr54B.gff, Sip1.gff, Start1.gff, Oseg4.gff, PR2.gff, UbcD6.gff, NetB.gff, NK7.1.gff, slpr.gff, Nmd3.gff, Tim10.gff, mmy.gff, pncr009:3L.gff, Papss.gff, shg.gff, Syb.gff, RecQ4.gff, SoxN.gff, RhoGAP18B.gff, Nup133.gff, opa.gff, Orc1.gff, Phm.gff, Rpn1.gff, pelo.gff, spict.gff, Nek2.gff, mRpS33.gff, sktl.gff, tara.gff, RfC38.gff, Rab-RP3.gff, Sulf1.gff, Su(dx).gff, PICK1.gff, S6kII.gff, Src42A.gff, TfIIB.gff, Rep.gff, Nplp1.gff, slp2.gff, mRpS11.gff, SamDC.gff, NLaz.gff, RpL8.gff, Oseg1.gff, sw.gff, Myo61F.gff, Tango2.gff, RpL18.gff, sec6.gff, UGP.gff, Pur-alpha.gff, Nlp.gff, Not1.gff, ps.gff, sip1.gff, tafazzin.gff, Ssrp.gff, slmb.gff, smid.gff, nudE.gff, wit.gff, Tdc1.gff, YL-1.gff, Rhp.gff, Mlf.gff, Pect.gff, sun.gff, tty.gff, rap.gff, sec8.gff, sog.gff, Tango11.gff, spir.gff, Ote.gff, Pfk.gff, Parp.gff, phol.gff, SmG.gff, Vha14.gff, phyl.gff, RpL13A.gff, tsh.gff, ric8a.gff, RpS4.gff, prc.gff, RpLP1.gff, Tip60.gff, Rox8.gff, Smvt.gff, Sap-r.gff, Pcl.gff, Pros35.gff, sec31.gff, Sra-1.gff, Spn43Ad.gff, Picot.gff, TH1.gff, mRpS29.gff, px.gff, rdgB.gff, wun2.gff, Rtc1.gff, snRNP69D.gff, Ugt.gff, Mmp1.gff, PDCD-5.gff, sec24.gff, mRpL46.gff, tsu.gff, mRpS26.gff, Spn43Aa.gff, Mo25.gff, p16-ARC.gff, par-1.gff, Nat1.gff, Nup62.gff, nbs.gff, p47.gff, Ngp.gff, sll.gff, Sc2.gff, VhaAC39.gff, Ptx1.gff, trx.gff, osp.gff, Pbgs.gff, Rpn9.gff, spin.gff, MrgBP.gff, Tsp42Ef.gff, pHCl.gff, Nnp-1.gff, nocturnin.gff, oho23B.gff, twin.gff, su(f).gff, RhoGAPp190.gff, Tif-IA.gff, Socs36E.gff, Prx2540-1.gff, su(Hw).gff, rtet.gff, roX1.gff, sala.gff, pnr.gff, Side.gff, Smr.gff, qua.gff, shf.gff, mRpS31.gff, mRpL1.gff, term.gff, Mkrn1.gff, mRpL32.gff, Prosap.gff, Updo.gff, mRpS10.gff, RpLP2.gff, Smc5.gff, vn.gff, ttk.gff, Zw.gff, trsn.gff, ppa.gff, Prat2.gff, Sep1.gff, msl-1.gff, run.gff, wech.gff, Syx13.gff, Sara.gff, nwk.gff, Sk1.gff, rl.gff, Spn6.gff, P5cr.gff, Pabp2.gff, sar1.gff, Tango10.gff, ninaD.gff, Obp83cd.gff, rept.gff, yki.gff, Rab5.gff, Rae1.gff, Nacalpha.gff, sr.gff, stai.gff, Pde8.gff, SF1.gff, Spf45.gff, Pimet.gff, msn.gff, pfk.gff, Sce.gff, Set.gff, Tom40.gff, Ravus.gff, Su(var)3-9.gff, Plap.gff, NijA.gff, put.gff, phr6-4.gff, Nedd8.gff, RpL21.gff, Sec61alpha.gff, Wwox.gff, orb2.gff, ush.gff, Mkp3.gff, p24-1.gff, rnh1.gff, RpS28b.gff, Rpt3R.gff, snRNP-U1.gff, T-cp1.gff, xmas-2.gff, Pglym78.gff, TRAM.gff, Syn.gff, RpS19a.gff, Trp1.gff, Vha13.gff, Nmnat.gff, mRpL24.gff, NfI.gff, pyd3.gff, Snr1.gff, Ras85D.gff, SH3PX1.gff, spz.gff, Srp19.gff, RpS29.gff, RhoGAP71E.gff, TMS1.gff, PyK.gff, Trip1.gff, Rgk1.gff, SPE.gff, veg.gff, tgy.gff, th.gff, tor.gff, Sbp2.gff, Sse.gff, Tsp42Ei.gff, Ptp4E.gff, trn.gff, Msi.gff, pip.gff, Synd.gff, Rpn2.gff, TepIV.gff, NPFR1.gff, RhoGDI.gff, RpS15Aa.gff, nct.gff, Uch-L3.gff, nop5.gff, wapl.gff, nahoda.gff, Moe.gff, NPC2.gff, phm.gff, Sema-5c.gff, mRpL52.gff, trbl.gff, mRNA-capping-enzyme.gff, Obp99a.gff, toc.gff, Vang.gff, Scm.gff, Ogg1.gff, Spn5.gff, Obp83g.gff, mRpL38.gff, PSR.gff, Zn72D.gff, Vinc.gff, Nurf-38.gff, Nop60B.gff, Rad23.gff, RpS15Ab.gff, Spt6.gff, Src64B.gff, TepIII.gff, ND42.gff, SMC2.gff, NFAT.gff, Stam.gff, mRpL10.gff, Pk92B.gff, R.gff, mRpL42.gff, MYPT-75D.gff, stwl.gff, Pbp49.gff, Pgant35A.gff, Osi6.gff, RpS26.gff, tutl.gff, Thiolase.gff, SMSr.gff, Toll-7.gff, rg.gff, rgr.gff, Osi3.gff, Prosalpha6.gff, Vha36.gff, ND75.gff, spheroide.gff, Tudor-SN.gff, qkr58E-1.gff, Sema-2a.gff, ZnT35C.gff, Ssl1.gff, RpS13.gff, yip7.gff, nvd.gff, Taf5.gff, Nc73EF.gff, p115.gff, RhoGAP5A.gff, Scgalpha.gff, Nep2.gff, Pp2C1.gff, Pc.gff, scarface.gff, Sod2.gff, zpg.gff, smp-30.gff, SPoCk.gff, nullo.gff, stg.gff, trem.gff, Sodh-2.gff, smg.gff, mTerf3.gff, pst.gff, mnd.gff, RpL36A.gff, RpL11.gff, wds.gff, Rip11.gff, Oatp74D.gff, Opbp.gff, Spc25.gff, neur.gff, Sema-1b.gff, Rab2.gff, Spn43Ab.gff, Ras64B.gff, sls.gff, OstStt3.gff, Trax.gff, Rph.gff, Pgi.gff, RhoGAP19D.gff, Xe7.gff, Pi3K92E.gff, mRpS22.gff, sgg.gff, sd.gff, sip3.gff, Stlk.gff, mod(r).gff, Pvf1.gff, RecQ5.gff, mub.gff, pug.gff, RpL32.gff, Nup58.gff, Pvr.gff, Pdsw.gff, sqz.gff, Rs1.gff, repo.gff, Rpt4.gff, Tm1.gff, vib.gff, nerfin-1.gff, mRpL22.gff, Rgl.gff, yrt.gff, mRpS7.gff, Nrx-IV.gff, Prosbeta2.gff, sol.gff, Rfabg.gff, tok.gff, polybromo.gff, Rab3.gff, shep.gff, unc-115.gff, mthl1.gff, shark.gff, Nca.gff, RpS25.gff, SAK.gff, SCAR.gff, squ.gff, Moca-cyp.gff, wmd.gff, Slu7.gff, piwi.gff, prod.gff, Nsf2.gff, RpL7A.gff, pdm2.gff, ple.gff, mtTFB1.gff, sim.gff, RpS14b.gff, Pros29.gff, Sans.gff, mRpS24.gff, Syx6.gff, ofs.gff, por.gff, Nmdmc.gff, Mnf.gff, spas.gff, swa.gff, mod(mdg4).gff, RpL18A.gff, sens-2.gff, Parg.gff, swi2.gff, Tfb1.gff, pgant6.gff, Orct.gff, mxc.gff, pr.gff, Syn2.gff, Vps28.gff, Nha2.gff, RpS9.gff, rst.gff, Tsf1.gff, Nop56.gff, Su(z)12.gff, nub.gff, st.gff, plexB.gff, tow.gff, Tsp66E.gff, Pdi.gff, opa1-like.gff, Vps16A.gff, wnd.gff, NAT1.gff, Reg-5.gff, Nopp140.gff, Tps1.gff, obst-J.gff, Rab21.gff, Trh.gff, Tbp.gff, Pvf2.gff, Rheb.gff, tkv.gff, unc-13.gff, zfh1.gff, Rab-RP4.gff, Ts.gff, VhaPPA1-1.gff, scrib.gff, Oamb.gff, qtc.gff, Tektin-A.gff, Top3alpha.gff, RpL19.gff, Rbp1-like.gff, ninaB.gff, Orc5.gff, RpS17.gff, shu.gff, tamo.gff
1044 5'RACE 454 sequencing - pool 5 Celniker Celniker RACE gene model Reactions=148486 Drosophila melanogaster y; cn bw sp early embryonic cell, blastoderm cell, gastrula cell embryo: cleavage stage, extended germ band stage, gastrula stage, pre-blastoderm stage 9/14/09 2/14/10 reviewing Hel25E.gff, CG16904.gff, Traf4.gff, CG13868.gff, disco.gff, Hsc70-5.gff, CG34360.gff, CG14445.gff, CG10254.gff, Herp.gff, Act57B.gff, CG4901.gff, CG5789.gff, pain.gff, capt.gff, Orc6.gff, rdo.gff, GluRIIE.gff, sina.gff, CG5214.gff, CG6231.gff, cup.gff, Upf2.gff, CG32694.gff, CG9715.gff, CG1623.gff, CG8398.gff, CG4140.gff, Cyp9b1.gff, PpD3.gff, Scamp.gff, Su(H).gff, CG31475.gff, gsb.gff, KdelR.gff, nrv2.gff, bbg.gff, His2A:CG33817.gff, CG8228.gff, CG30035.gff, Pdf.gff, CG6947.gff, CG4949.gff, CG2258.gff, CG15814.gff, CG8519.gff, CG10359.gff, NaCP60E.gff, CG4282.gff, Usf.gff, CG9139.gff, CG3078.gff, CG14314.gff, tan.gff, Timp.gff, Ser6.gff, fend.gff, bsk.gff, CG30503.gff, CG3995.gff, CG9231.gff, mus201.gff, Tina-1.gff, CG7053.gff, Ark.gff, CG42384.gff, His1:CG33804.gff, CG9368.gff, Mipp2.gff, Taf12.gff, Uba1.gff, elav.gff, CG8486.gff, beat-Ic.gff, CG11191.gff, CG7289.gff, CG11844.gff, dia.gff, Cyp301a1.gff, tws.gff, CG18292.gff, CG31688.gff, CG34408.gff, CG31190.gff, CG42315.gff, CG32017.gff, myoglianin.gff, CG5707.gff, CG5150.gff, Set2.gff, Lac.gff, CG9855.gff, CG5535.gff, r-l.gff, CG2678.gff, Tab2.gff, CG8129.gff, 5-HT2.gff, nuf.gff, Ac78C.gff, CG4199.gff, CG7484.gff, CG8399.gff, Myb.gff, CG42331.gff, CG5694.gff, CG11659.gff, Fkbp13.gff, RpL13.gff, pr-set7.gff, l(2)k09022.gff, RpS6.gff, arm.gff, CG9940.gff, MED9.gff, borr.gff, CG34370.gff, Ogt.gff, CG9876.gff, CG6910.gff, CG8051.gff, barr.gff, Dlc90F.gff, CG2061.gff, CG16758.gff, Taspase1.gff, CG31246.gff, NiPp1.gff, CG42322.gff, CG7979.gff, CG8909.gff, ave.gff, CG15881.gff, CG30007.gff, Yippee.gff, CG7791.gff, Wnt2.gff, CG3104.gff, CG32789.gff, CG4766.gff, tou.gff, yuri.gff, dco.gff, LanA.gff, Nrk.gff, CDase.gff, CG10993.gff, CG5931.gff, Csl4.gff, sick.gff, CG3655.gff, CG31441.gff, CG32548.gff, CG17930.gff, CG3476.gff, CG3016.gff, tmod.gff, CG2794.gff, CG18604.gff, neuroligin.gff, CG4061.gff, CG34417.gff, Sp1.gff, sty.gff, CG30089.gff, CG3419.gff, PRL-1.gff, CG10362.gff, bi.gff, CG31038.gff, CG11163.gff, CG7988.gff, Kr-h1.gff, Nak.gff, CG8147.gff, Jon25Bi.gff, CG6479.gff, CG14591.gff, CG3563.gff, CG18177.gff, AcCoAS.gff, grass.gff, bun.gff, Sox14.gff, CG10214.gff, G-salpha60A.gff, path.gff, Btk29A.gff, Tpr2.gff, Tsp42Eg.gff, pot.gff, CG9821.gff, CG2157.gff, Ptp10D.gff, cerv.gff, Ect4.gff, mael.gff, Pros26.gff, Tsp42Eh.gff, CG11927.gff, Sh.gff, CG31148.gff, CG17781.gff, CG3825.gff, CG32549.gff, Cpr12A.gff, CG1882.gff, CG6967.gff, CG5116.gff, CG10576.gff, Oli.gff, pwn.gff, CG32195.gff, CG7843.gff, NHP2.gff, daw.gff, pho.gff, bif.gff, CG4330.gff, fs(2)ltoPP43.gff, Rab9.gff, Rab35.gff, CG2016.gff, CG10274.gff, His4:CG33909.gff, CG15012.gff, CG7059.gff, CG9804.gff, Gpb5.gff, Sox21b.gff, CG8445.gff, Wsck.gff, cag.gff, CG14329.gff, CG7549.gff, GNBP1.gff, CycK.gff, A16.gff, cv.gff, CR32730.gff, CG17321.gff, CG6695.gff, Cpr97Ea.gff, kon.gff, CG6454.gff, Cyp4d20.gff, gry.gff, CG7956.gff, CG8783.gff, mio.gff, CG10365.gff, CG12163.gff, CG1809.gff, CG41099.gff, CG3731.gff, GluRIIC.gff, Ccap.gff, pcm.gff, aru.gff, Pde1c.gff, CG14528.gff, CG32666.gff, CG6094.gff, cbs.gff, CG12935.gff, CG13203.gff, CG15515.gff, CG32813.gff, CG5160.gff, CG1957.gff, CG10344.gff, CG10598.gff, CG9836.gff, CG2772.gff, CG9548.gff, kel.gff, His1:CG33810.gff, CG32102.gff, CG33096.gff, CG13813.gff, CG7920.gff, Ca-P60A.gff, CG3884.gff, dm.gff, Tim9b.gff, CG3530.gff, pod1.gff, CG14277.gff, CG17257.gff, l(1)G0060.gff, CG17193.gff, CG30085.gff, G9a.gff, CG14959.gff, CG32820.gff, Fsh.gff, Gbp.gff, Nup98.gff, CG10353.gff, CG17370.gff, janA.gff, Dbi.gff, CG5555.gff, CG4365.gff, CG42336.gff, rok.gff, CG10462.gff, Gyk.gff, CG1518.gff, scramb1.gff, CG13305.gff, CG9514.gff, CG12340.gff, ERp60.gff, Actn.gff, mod.gff, CG30022.gff, sage.gff, Tm2.gff, CG1600.gff, CG1792.gff, Sodh-1.gff, CG12206.gff, CG31342.gff, CG14014.gff, Pbp45.gff, tomosyn.gff, Osi18.gff, Ranbp11.gff, yellow-e.gff, Mip.gff, slam.gff, DNApol-gamma35.gff, Ork1.gff, CG14715.gff, jing.gff, CG10555.gff, CG15706.gff, Sug.gff, CG1599.gff, SP2353.gff, DAT.gff, PQBP-1.gff, Fdh.gff, CG10064.gff, CG5044.gff, CG9825.gff, Indy.gff, Mgstl.gff, Pph13.gff, CG5060.gff, CG9063.gff, l(2)37Bb.gff, CG17065.gff, Lim1.gff, CG17191.gff, CG14882.gff, CG3003.gff, CG31146.gff, CG8272.gff, Atf-2.gff, lama.gff, CG12998.gff, ko.gff, CG1381.gff, dei.gff, ken.gff, Ptpmeg.gff, wuho.gff, CG31301.gff, CG31116.gff, CG8679.gff, CG9572.gff, CG10263.gff, btd.gff, CG10512.gff, CG14647.gff, MED15.gff, CG14454.gff, CG7369.gff, CG7082.gff, CG12224.gff, CG5274.gff, Rab30.gff, CG33692.gff, CG9104.gff, Frq2.gff, CG33672.gff, CG30491.gff, CG4038.gff, CG10625.gff, CG30105.gff, CG7148.gff, sano.gff, CG30059.gff, CG7650.gff, LCBP1.gff, CG14044.gff, CG15335.gff, CG15643.gff, 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Smr.gff, CG1785.gff, CG5618.gff, CG34126.gff, Appl.gff, CG15547.gff, CG31759.gff, Adgf-D.gff, CG10053.gff, CG11109.gff, CG5262.gff, CG13983.gff, CG31869.gff, CG17843.gff, CG6951.gff, CG7829.gff, dgo.gff, CG11319.gff, CG7139.gff, fray.gff, Fmrf.gff, CG30427.gff, CG8036.gff, epsilonTry.gff, rdgC.gff, CG5059.gff, HLHmbeta.gff, CG2641.gff, DNApol-alpha60.gff, CG34339.gff, run.gff, wech.gff, cav.gff, CG14216.gff, CG14355.gff, nwk.gff, Sk1.gff, rl.gff, CG7349.gff, CG8366.gff, didum.gff, CG13826.gff, CG4945.gff, CG6026.gff, CG5323.gff, CG9577.gff, seq.gff, CG4692.gff, DLP.gff, l(3)L1231.gff, CG31224.gff, HBS1.gff, Obp83cd.gff, CG4616.gff, CG7842.gff, CG3091.gff, Jon66Ci.gff, Rab5.gff, CG9350.gff, CG4484.gff, Nacalpha.gff, sr.gff, IM10.gff, CG30158.gff, CG7518.gff, Acf1.gff, CG32335.gff, for.gff, CG33156.gff, Aps.gff, Tom40.gff, Ravus.gff, CG11400.gff, CG2765.gff, inaD.gff, CG11035.gff, CG8850.gff, CG31357.gff, CG42254.gff, CG7794.gff, CG6619.gff, CG9990.gff, Dscam.gff, NijA.gff, CG10126.gff, CG1347.gff, MESR4.gff, CG6700.gff, hoe1.gff, orb2.gff, CG15817.gff, CG10395.gff, CG4017.gff, gukh.gff, Acox57D-p.gff, CG3505.gff, CG42257.gff, T-cp1.gff, Ada2b.gff, ldbr.gff, Pglym78.gff, CG13369.gff, vir-1.gff, Hil.gff, CG2097.gff, cher.gff, CG6287.gff, GstD4.gff, CG7351.gff, CG7016.gff, Srp19.gff, CG5883.gff, CG9519.gff, caup.gff, Ge-1.gff, CG7611.gff, CG8841.gff, CG1681.gff, Alh.gff, CG13253.gff, fz4.gff, cad.gff, Rgk1.gff, CG18870.gff, CG42360.gff, CG9636.gff, tgy.gff, CG14500.gff, eyg.gff, Sbp2.gff, CG6385.gff, Msi.gff, CG42319.gff, asparagine-synthetase.gff, CG9109.gff, Pdp1.gff, CG33291.gff, mdy.gff, CG11155.gff, CG8552.gff, ftz.gff, norpA.gff, CG2680.gff, CG31823.gff, CG12539.gff, CG3500.gff, ChLD3.gff, CG13311.gff, caps.gff, CG15097.gff, CG14085.gff, Sin3A.gff, CG11158.gff, CG1434.gff, CG10657.gff, CG13728.gff, fz3.gff, CG13679.gff, CG30403.gff, CG3608.gff, Cyp4ad1.gff, CG10417.gff, toc.gff, CG18812.gff, CG10080.gff, CG3168.gff, CG33129.gff, Vang.gff, CG14440.gff, RhoGAP1A.gff, dgt3.gff, Bx42.gff, CG32369.gff, CG17282.gff, dsx.gff, Doa.gff, CG31259.gff, ec.gff, Eip63E.gff, CG4389.gff, glob1.gff, HPS.gff, Vinc.gff, CG8247.gff, cic.gff, CG11695.gff, Ggamma1.gff, CG7668.gff, Alg10.gff, CG32446.gff, CG42382.gff, mst.gff, CG7420.gff, NFAT.gff, Stam.gff, Pk92B.gff, CG8028.gff, CG11122.gff, CG14681.gff, CG6640.gff, CG8928.gff, CG15747.gff, CG1621.gff, CG1814.gff, lwr.gff, CG32392.gff, RpS10a.gff, CG14946.gff, CG9866.gff, dgt4.gff, Tob.gff, cenG1A.gff, ine.gff, CG6569.gff, Hnf4.gff, SMSr.gff, Toll-7.gff, CG4594.gff, rg.gff, CG12880.gff, Hdm.gff, Qm.gff, CG10960.gff, CG31278.gff, CG4996.gff, Vha36.gff, d4.gff, spheroide.gff, CG14414.gff, CG30492.gff, CG1620.gff, CG5802.gff, CG6661.gff, CG6356.gff, CG15161.gff, ferrochelatase.gff, sgl.gff, Jon65Aiv.gff, AP-2.gff, CG3919.gff, CG6216.gff, CG11444.gff, CG2747.gff, CG3983.gff, CG5026.gff, CG31630.gff, comt.gff, DIP1.gff, CG10550.gff, CG11149.gff, CG3511.gff, Cyp6a8.gff, CG15044.gff, CG1646.gff, nullo.gff, CG6980.gff, CG8516.gff, smg.gff, mTerf3.gff, CG40002.gff, CG6013.gff, Unr.gff, mbf1.gff, CG14100.gff, CG17896.gff, bowl.gff, CG5793.gff, Arc1.gff, CG5181.gff, CG9576.gff, dom.gff, Ef1alpha100E.gff, neur.gff, bin3.gff, CG11378.gff, Cip4.gff, Deaf1.gff, Su(Tpl).gff, TfIIA-L.gff, CG5447.gff, CG8058.gff, CG5731.gff, Hmgs.gff, CG9505.gff, gt.gff, KaiRIA.gff, Trax.gff, CG17806.gff, Cht5.gff, RhoGAP19D.gff, Xe7.gff, ctp.gff, CG4753.gff, glo.gff, Pi3K92E.gff, CG31241.gff, CG8316.gff, Pi4KIIalpha.gff, CG40463.gff, knrl.gff, sgg.gff, CG8683.gff, sd.gff, Aats-thr.gff, CG10803.gff, CG17083.gff, CG2781.gff, loj.gff, CG9143.gff, alpha-Est2.gff, CG11241.gff, AGO2.gff, in.gff, alpha-Spec.gff, Tm1.gff, CG4678.gff, mRpL22.gff, CG16833.gff, fliI.gff, CG7945.gff, tok.gff, ATPsyn-Cf6.gff, CG11459.gff, CG15094.gff, Cyp6d4.gff, polybromo.gff, CG17994.gff, CG8545.gff, CG17108.gff, CG11986.gff, Ipp.gff, CG15629.gff, CG13430.gff, CG8494.gff, squ.gff, CG30431.gff, CG8520.gff, CG7328.gff, CG3812.gff, CG11166.gff, CG14036.gff, CG31675.gff, CG4973.gff, Csat.gff, sim.gff, Sans.gff, CHKov2.gff, CG17544.gff, CG13604.gff, CG31367.gff, rod.gff, CG4495.gff, CG12213.gff, CG14667.gff, alpha-Est7.gff, CG7407.gff, Cyp9f2.gff, ftz-f1.gff, CG34325.gff, Ast-C.gff, CG11337.gff, CG4267.gff, CG1647.gff, CG32537.gff, CG17765.gff, CG9646.gff, CG15251.gff, CG10492.gff, Pole2.gff, CG10664.gff, CG8478.gff, CG7692.gff, CG4400.gff, Orct.gff, CG4040.gff, CG5315.gff, CG11670.gff, CG32576.gff, CG31935.gff, CG32365.gff, CG4723.gff, Nha2.gff, aft.gff, CG17259.gff, mu2.gff, CG7768.gff, CG10217.gff, CG6718.gff, poly.gff, nub.gff, st.gff, CG9641.gff, plexB.gff, CR30009.gff, l(2)37Cd.gff, CG11784.gff, CG10496.gff, CG6144.gff, Cyp12a4.gff, Hr46.gff, Pdi.gff, CG14040.gff, CG14317.gff, Ady43A.gff, CG17047.gff, CG6509.gff, Mekk1.gff, CG17904.gff, CG1815.gff, wnd.gff, Klp98A.gff, And.gff, CG31716.gff, CG8145.gff, NaPi-T.gff, CG15743.gff, CoVa.gff, CG5787.gff, CG12483.gff, CG6415.gff, CG4942.gff, Rab21.gff, CG32245.gff, CG7922.gff, CG17124.gff, Pvf2.gff, flw.gff, Mbs.gff, tkv.gff, CG6765.gff, CG12111.gff, CG5028.gff, CG42307.gff, CG14883.gff, hh.gff, ImpE3.gff, CG17119.gff, eIF-3p40.gff, CG8042.gff, E2f.gff, Oamb.gff, qtc.gff, Tektin-A.gff, CG8680.gff, Rbp1-like.gff, CG4858.gff, Hsp70Bb.gff, ninaB.gff, Nup358.gff, CG6175.gff, Gyc76C.gff, CkIalpha.gff, CG14618.gff, endos.gff, CG2065.gff, CG8451.gff, org-1.gff, CG5630.gff, CG5880.gff, CG41378.gff, CG6842.gff, CG10592.gff, CG6091.gff, CG4221.gff, CG33969.gff, imd.gff, CG3631.gff, CG7536.gff, Prm.gff, CG12024.gff, eRF1.gff, CG17836.gff, CG11814.gff, me31B.gff, Apc.gff, CG10026.gff, CG4294.gff, CG5384.gff, CG1827.gff, CG6579.gff, Egfr.gff, CG7248.gff, Lmpt.gff, Ndc80.gff, Abd-B.gff, CG11883.gff, CG8852.gff, Nufip.gff, CG11970.gff, Gpi1.gff, CG32109.gff, CG32373.gff, Syx17.gff, TwdlG.gff, CG4098.gff, CG15312.gff, CG15314.gff, CG5118.gff, Calx.gff, CG7708.gff, CG18600.gff, CG40263.gff, NTPase.gff, CG13065.gff, CG7795.gff, CG8795.gff, CG15107.gff, schuy.gff, Caf1.gff, mRpS35.gff, CG6876.gff, CG30493.gff, CG32425.gff, morgue.gff, egl.gff, CG9114.gff, CG31223.gff, Fst.gff, rho-4.gff, CG10038.gff, Cyp6t1.gff, JhI-26.gff, br.gff, oc.gff, wus.gff, bnb.gff, Sr-CI.gff, Bre1.gff, Gs2.gff, vnd.gff, CG10934.gff, CG3156.gff, CG14423.gff, CG1597.gff, CG9007.gff, CG3552.gff, CG5098.gff, Gclc.gff, CG3184.gff, CG4272.gff, Nrg.gff, rhi.gff, tsg.gff, yellow-c.gff, CG12030.gff, CG42321.gff, CG16718.gff, moody.gff, disco-r.gff, CG8798.gff, e.gff, CG10874.gff, CG15111.gff, CG31793.gff, CG32270.gff, CG9240.gff, CG3921.gff, CG8112.gff, CG14109.gff, CG13887.gff, sas.gff, CG11136.gff, CG16742.gff, CG17549.gff, Dsp1.gff, akirin.gff, CG10958.gff, Lhr.gff, z.gff, Pak.gff, CG30290.gff, CG3597.gff, CG1233.gff, CG7730.gff, msps.gff, CG5080.gff, CG4847.gff, CG14966.gff, CG18446.gff, CG1737.gff, otp.gff, thr.gff, CG30118.gff, CG1024.gff, CG14521.gff, CG7741.gff, CG1516.gff, CG18217.gff, Krn.gff, TwdlM.gff, CG17219.gff, Kap-alpha1.gff, CG7023.gff, CG9737.gff, CG2003.gff, CG9083.gff, dpr6.gff, Cad99C.gff, LBR.gff, MESK4.gff, Mlc2.gff, pzg.gff, CG3975.gff, CG7510.gff, W.gff, Ced-12.gff, CG1021.gff, CG3434.gff, jhamt.gff, Aats-phe.gff, dre4.gff, mRpS9.gff, CG11418.gff, CG31790.gff, CG5205.gff, CG5762.gff, CG12004.gff, CG9986.gff, CG14299.gff, CG3362.gff, CG1698.gff, CG6294.gff, CG32394.gff, CG14786.gff, BRWD3.gff, CG9837.gff, phl.gff, CG42345.gff, Nup153.gff, CG32662.gff, Ama.gff, CG31272.gff, Lnk.gff, melt.gff, spd-2.gff, CG5039.gff, CG8616.gff, Fer2LCH.gff, CG2269.gff, Pka-C3.gff, CLIP-190.gff, gfzf.gff, CG2911.gff, lola.gff, snapin.gff, CG30001.gff, CG5728.gff, stv.gff, unc-5.gff, CG30340.gff, CG32557.gff, CG3566.gff, CG4726.gff, Myd88.gff, CG14411.gff, CG10947.gff, AP-50.gff, CG10467.gff, CG11307.gff, Pxn.gff, XRCC1.gff, CG31663.gff, CG32541.gff, Mical.gff, plx.gff, CG8525.gff, CG13995.gff, CG4364.gff, cdc2rk.gff, CG8234.gff, CG9338.gff, htl.gff, CG2321.gff, CG13003.gff, ry.gff, CG7206.gff, aay.gff, CG7810.gff, Fer3.gff, CG1602.gff, UBL3.gff, dod.gff, VAChT.gff, Vha100-1.gff, CG14686.gff, CG6136.gff, CG42445.gff, Vrp1.gff, SA.gff, TORC.gff, sha.gff, CG15211.gff, CG4064.gff, CG8441.gff, Atg2.gff, CG10414.gff, CG12856.gff, CkIIbeta.gff, Eap.gff, Sxl.gff, mus308.gff, CG4334.gff, CG9253.gff, CG9784.gff, Ski6.gff, CG1561.gff, GstE2.gff, SK.gff, CG31633.gff, CG5127.gff, CG5077.gff, CG6683.gff, CG10971.gff, Nmdar1.gff, Cdk5.gff, CG13643.gff, alc.gff, CG7705.gff, Dpit47.gff, Dsor1.gff, slgA.gff, CG15828.gff, CG4297.gff, CG32626.gff, CG7203.gff, CG9586.gff, cnc.gff, LpR1.gff, Tequila.gff, Cby.gff, CG1136.gff, CG8303.gff, CG1773.gff, tsl.gff, CG30185.gff, stan.gff, CG5162.gff, CG5792.gff, CG6154.gff, CG16985.gff, CG9460.gff, Miro.gff, pita.gff, Rme-8.gff, bon.gff, Nep3.gff, CG11919.gff, CG33217.gff, CG6750.gff, CG32115.gff, EloA.gff, CG42240.gff, Csp.gff, CG15561.gff, CG3409.gff, sip2.gff, CG6429.gff, Tk.gff, CG12123.gff, CG12314.gff, l(3)mbt.gff, aralar1.gff, miple2.gff, CG4324.gff, Hsp70Ab.gff, Orc2.gff, CG10000.gff, CG30440.gff, Ank2.gff, Cpr97Eb.gff, Ephrin.gff, CG17265.gff, CG4433.gff, CG1298.gff, Keap1.gff, dpr10.gff, SPR.gff, cbx.gff, exd.gff, Las.gff, CG34379.gff, CG15818.gff, CG18853.gff, CG31386.gff, CG31813.gff, Ntf-2.gff, Upf3.gff, CG32155.gff, Rca1.gff, grn.gff, Dp1.gff, CG9701.gff, nompA.gff, Sec61gamma.gff, Taf7.gff, CG15701.gff, CG3332.gff, CG12236.gff, CG9044.gff, CG6115.gff, CG8405.gff, l(2)37Cc.gff, CG14117.gff, RpL23A.gff, CG18675.gff, CG8483.gff, Atx2.gff, CG6125.gff, CG13313.gff, CG5191.gff, Dcp-1.gff, CG31221.gff, pes.gff, CG34141.gff, CG9517.gff, CG5626.gff, CG7971.gff, CG17272.gff, Anxb11.gff, boi.gff, mRpL13.gff, CG8038.gff, T3dh.gff, RhoGAP93B.gff, sesB.gff, CG31169.gff, Chc.gff, Shc.gff, psq.gff, shot.gff, CG10186.gff, CG11820.gff, CG8533.gff, Hr78.gff, CG1657.gff, key.gff, CG1665.gff, Cpr11B.gff, Aats-asn.gff, Pde11.gff, CG5541.gff, l(2)k09913.gff, amd.gff, Art7.gff, CG7102.gff, CG12736.gff, CG10795.gff, CG9248.gff, eIF2B-epsilon.gff, plexA.gff, CG4467.gff, Sps2.gff, CG4729.gff, CG32556.gff, CG11178.gff, park.gff, CG8993.gff, CG14309.gff, MED4.gff, CG14326.gff, Cyp6d2.gff, sm.gff, CG2446.gff, CG5445.gff, CG10194.gff, CG34331.gff, CG30120.gff, Txl.gff, CG14043.gff, MTF-1.gff, Cp1.gff, mus101.gff, eIF2B-delta.gff, Arr1.gff, CG32343.gff, Cdk8.gff, CG2663.gff, CG4213.gff, CG14104.gff, Ide.gff, CG30467.gff, CG32850.gff, CG32767.gff, kay.gff
2002 Lai_MLDmD20c5/BS16 Lai Lai RNA-seq RNA profiling Drosophila melanogaster ML-DmD20-c5 2/3/10 2/4/10 released , GSE24298, GSM609217
2003 Lai_Sg4/BS35 Lai Lai RNA-seq RNA profiling Drosophila melanogaster Sg4 2/4/10 2/4/10 released , GSE24299, GSM609218
2004 Lai_GM2cell/BS32 Lai Lai RNA-seq RNA profiling Drosophila melanogaster GM2 9/17/09 2/11/10 released , GSE24300, GSM609219
2005 Lai_ML-DmD21cell/BS90 Lai Lai RNA-seq RNA profiling Drosophila melanogaster ML-DmD21 2/8/10 2/8/10 released , GSE24301, GSM609220
2006 Lai_1182-4Hcell/BS23 Lai Lai RNA-seq RNA profiling Drosophila melanogaster 1182-4H 2/8/10 2/8/10 released , GSE24302, GSM609221
2007 Lai_ML-DmBG1c1/BS176 Lai Lai RNA-seq RNA profiling Drosophila melanogaster ML-DmBG1-c1 2/8/10 2/8/10 released , GSE24303, GSM609222
2008 Lai_one day adult male-ENCODE/BS149 Lai Lai RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 2/1/10 2/2/10 released , GSE24304, GSM609223
2009 Lai_one day adult female-ENCODE/BS152 Lai Lai RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/17/09 2/11/10 released , GSE24305, GSM609224
2010 E0-4_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 9/17/09 10/4/09 released GSM451806
2014 deprecated by 2503 150_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2 9/18/09 10/16/09 replaced GSM333836
2015 deprecated by 2504 H2Av_EDTA Henikoff Henikoff ChIP-chip chromatin SaltConcentration=15mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2 9/18/09 10/16/09 replaced GSM333849
2016 deprecated by 2505 H2A_EDTA Henikoff Henikoff ChIP-chip chromatin SaltConcentration=15mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2 9/18/09 10/16/09 replaced GSM333848
2017 deprecated by 2523 80-600_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2 9/18/09 10/16/09 replaced GSM333852
2018 deprecated by 2528 Mononucleosomes_S2 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=15mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2 9/18/09 10/16/09 replaced GSM333837
2019 E4-8_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 9/18/09 10/4/09 released GSM451809
2020 E8-12_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 12-15 9/18/09 10/4/09 released GSM451808
2021 E12-16_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 15-16 9/18/09 10/4/09 released GSM451803
2022 E16-20_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/18/09 10/4/09 released GSM451807
2023 E20-24_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 17 9/18/09 10/4/09 released GSM451810
2024 L1_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage 9/18/09 10/4/09 released GSM451811
2025 L2_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: second instar larval stage 9/18/09 10/4/09 released GSM453867
2026 AdultFemale_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/18/09 10/4/09 released GSM451805
2027 AdultMale_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/18/09 10/4/09 released GSM451804
2028 deprecated by 2525 150-600_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster mixed: S2, S2-DRSC 9/18/09 10/16/09 replaced GSM333832
2029 L3_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: third instar larval stage 9/18/09 10/4/09 released GSM451812
2030 Pupae_TotalRNA_RNAseq White White RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage 9/18/09 10/4/09 released GSM451813
2031 deprecated by 2506 Nucleosome_Density_S2 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=15mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2 9/18/09 10/16/09 replaced GSM333835
2239 deprecated by 2393 superseded by 2801 Dev Timecourse Embryo 18-20h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, late embryonic stage, embryonic stage 17 9/18/09 9/23/09 replaced SRA009364
2240 deprecated by 2390 Dev Timecourse Embryo 4-6h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 9/18/09 9/23/09 replaced SRA009364
2241 deprecated by 2391 Dev Timecourse Embryo 6-8h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: extended germ band stage, late extended germ band stage, embryonic stage 11-12 9/18/09 9/23/09 replaced SRA009364
2242 deprecated by 2392 Dev Timecourse Embryo 8-10h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: late extended germ band stage, embryonic stage 12-13 9/18/09 9/23/09 replaced SRA009364
2244 deprecated by 2389 Dev Timecourse Embryo 0-2h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, pre-blastoderm stage, embryonic stage 1-2 9/18/09 9/23/09 replaced SRA009364
2245 superseded by 2804 Dev Timecourse Embryo 2-4h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 9/18/09 10/7/09 replaced SRR023502, SRR023660, SRR023705, SRR023722, SRR023745, SRR027112
2246 superseded by 2797 Dev Timecourse Embryo 10-12h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 13-15 9/18/09 10/7/09 replaced SRR023604, SRR023644, SRR023694, SRR023727, SRR023831, SRR024010, SRR024221
2247 deprecated by 2491 superseded by 2798 Dev Timecourse Embryo 12-14h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: dorsal closure stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 15-16 9/18/09 10/7/09 replaced SRR023602, SRR023643, SRR023703, SRR023724, SRR023832, SRR024012
2248 superseded by 2799 Dev Timecourse Embryo 14-16h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 16 9/19/09 10/7/09 replaced SRR023540, SRR023641, SRR023725, SRR023734, SRR023736, SRR023822, SRR024011
2249 superseded by 2802 Dev Timecourse Embryo 20-22h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, embryonic stage 17 9/19/09 10/7/09 replaced SRR023506, SRR023665, SRR023684, SRR023718, SRR023728, SRR027109
2250 superseded by 2803 Dev Timecourse Embryo 22-24h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, late embryonic stage, embryonic stage 17 9/19/09 10/7/09 replaced SRR023538, SRR023685, SRR023711, SRR023733, SRR023834, SRR024015
2251 superseded by 2878 Dev Timecourse WhitePrePupae RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: prepupal stage, prepupal stage P1 9/19/09 10/7/09 replaced SRR023687, SRR023695, SRR023704, SRR023784, SRR023837, SRR026432
2252 superseded by 2815 Dev Timecourse WhitePrePupae+12h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: prepupal stage, prepupal stage P4, prepupal stage P4(i), prepupal stage P4(ii) 9/19/09 10/7/09 replaced SRR023544, SRR023639, SRR023647, SRR023689, SRR023716, SRR023833
2253 deprecated by 2494 superseded by 2816 Dev Timecourse WhitePrePupae+24h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism pupae: pupal stage, pupal stage P6 9/19/09 10/7/09 replaced SRR023541, SRR023656, SRR023708, SRR023756, SRR023830
2254 deprecated by 2495 superseded by 2817 Dev Timecourse WhitePrePupae+2d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism pupae: pharate adult stage, pharate adult stage P8 9/19/09 10/7/09 replaced SRR023667, SRR023721, SRR023743, SRR023785, SRR023829, SRR026431
2255 superseded by 2818 Dev Timecourse WhitePrePupae+3d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism pupae: pharate adult stage, pharate adult stage P9 9/19/09 10/7/09 replaced SRR023738, SRR023744, SRR023748, SRR023783, SRR024216, SRR026430
2256 superseded by 2819 Dev Timecourse WhitePrePupae+4d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism pupae: pharate adult stage, pharate adult stage P15, pharate adult stage P15(i) 9/19/09 10/7/09 replaced SRR023609, SRR023653, SRR023723, SRR023735, SRR023740, SRR023827
2257 superseded by 2808 Dev Timecourse L1 RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: first instar larval stage, larval stage 9/19/09 10/7/09 replaced SRR023597, SRR023646, SRR023661, SRR023666, SRR023706, SRR023835
2258 superseded by 2809 Dev Timecourse L2 RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: larval stage, second instar larval stage 9/19/09 10/7/09 replaced SRR023542, SRR023670, SRR023719, SRR023761, SRR023824, SRR024016
2259 superseded by 2810 Dev Timecourse L3+12h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: larval stage, third instar larval stage 9/19/09 10/8/09 replaced SRR023507, SRR023649, SRR023677, SRR023731, SRR023760, SRR027111
2260 deprecated by 2394 Dev Timecourse L3 PS1-2 RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: larval stage, third instar larval stage 9/19/09 9/23/09 replaced SRA009364
2261 deprecated by 2395 superseded by 2812 Dev Timecourse L3 PS3-6 RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: larval stage 9/19/09 9/23/09 replaced SRA009364
2262 superseded by 2813 Dev Timecourse L3 PS7-9 RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: larval stage 9/19/09 10/7/09 replaced SRR023729, SRR023739, SRR023782, SRR023865, SRR026433
2263 superseded by 2794 Dev Timecourse Adult Female Eclosure+1d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/19/09 10/7/09 replaced SRR023595, SRR023662, SRR023680, SRR023702, SRR023737, SRR023828, SRR024220
2264 deprecated by 2396 Dev Timecourse Adult Female Eclosure+30d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/19/09 9/23/09 replaced SRA009364
2265 deprecated by 2498 superseded by 2795 Dev Timecourse Adult Female Eclosure+5d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/19/09 10/7/09 replaced SRR023547, SRR023607, SRR023645, SRR023651, SRR023652, SRR023717, SRR023730, SRR023753
2266 deprecated by 2497 superseded by 2790 Dev Timecourse Adult Male Eclosure+1d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/19/09 10/7/09 replaced SRR023543, SRR023648, SRR023664, SRR023678, SRR023741, SRR023825
2267 superseded by 2792 Dev Timecourse Adult Male Eclosure+30d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/19/09 10/7/09 replaced SRR023601, SRR023650, SRR023698, SRR023714, SRR023752, SRR023823, SRR024218
2268 deprecated by 2397 Dev Timecourse Adult Male Eclosure+5d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 9/19/09 9/23/09 replaced SRA009364
2269 superseded by 2675 MB6 gene models Celniker Brent Computational annotation gene model Drosophila melanogaster 9/19/09 10/9/09 replaced models/MB06.gff3, models/DMG7_before_update.gff3, transcript_clusters/dm3_run10.gff3
2270 MB6 RTPCR Celniker Brent RTPCR gene model Reactions=284 Drosophila melanogaster CME L1 9/19/09 10/6/09 released MB6-RTPCR.gff3
2271 deprecated by 2507 Fly_embryos_1-3_hr_150_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: embryonic stage 3-6 9/20/09 10/16/09 replaced
2272 deprecated by 2508 Fly_embryos_1-3_hr_600_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: embryonic stage 3-6 9/20/09 10/16/09 replaced
2273 deprecated by 2509 Fly_embryos_1-3_hr_600_mM_Salt_Extracted_Chromatin_Pellet Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: embryonic stage 3-6 9/20/09 10/16/09 replaced
2274 deprecated by 2510 Fly_embryos_4-6_hr_150_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: Embyro 4-6 h, early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 9/20/09 10/16/09 replaced
2275 deprecated by 2511 Fly_embryos_4-6_hr_600_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: Embyro 4-6 h, early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 9/20/09 10/16/09 replaced
2276 deprecated by 2512 Fly_embryos_4-6_hr_600_mM_Salt_Extracted_Chromatin_Pellet Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: Embyro 4-6 h, early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 9/20/09 10/16/09 replaced
2277 deprecated by 2513 Fly_wing_disc_80_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster ML-DmD16-c3 9/20/09 10/16/09 replaced
2278 deprecated by 2514 Fly_wing_disc_150_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster ML-DmD16-c3 9/20/09 10/16/09 replaced
2279 deprecated by 2515 Fly_wing_disc_600_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster ML-DmD16-c3 9/20/09 10/16/09 replaced
2280 deprecated by 2516 Fly_wing_disc_600_mM_Salt_Extracted_Chromatin_Pellet Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster ML-DmD16-c3 9/20/09 10/16/09 replaced
2301 RNAi CG9983 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=Hrb98DE Drosophila melanogaster S2-DRSC 9/21/09 10/8/09 released GSM461186
2302 RNAi CG9373 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=rump Drosophila melanogaster S2-DRSC 9/21/09 10/8/09 released GSM461184
2304 Intron Confirmation Chromosome II 2009-09-21 Waterston Green RTPCR gene model Reactions=473;Features=709 Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, all stages, dauer larva, embryo 9/21/09 9/27/09 released set.20090921.2_3_2_2_4_3_3_2_2.ws180.gff
2305 RNAi Untreated-B (control) S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling Drosophila melanogaster S2-DRSC 9/21/09 10/9/09 released GSM461182
2311 deprecated by 3197 Histone_H3K4me3_N2_EEMB_(WA30534819_H3K4ME3_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/7/09 11/27/09 replaced , GSE22721, GSM562717, GSM562718
2312 Histone_H3_N2_EEMB_1_(AR0144_H3144_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3;AbName=H3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/23/09 11/27/09 released , GSE22722, GSM562719, GSM562720, GSM562721
2313 Histone_H3_N2_EEMB_2_(AB1791_H3609253_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3;AbName=H3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/24/09 11/27/09 released , GSE22723, GSM562722, GSM562723
2321 RNAseq - early embryo sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/29/09 11/16/09 released SRX004863, SRX004864
2324 RNAseq - late embryo 20dC 4.5hrs post-early embryo sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism embryo: elongating embryo, enclosing embryo, fully-elongated embryo, late cleavage stage embryo 9/29/09 11/16/09 released SRX004865, SRX004866
2325 RNAseq - male mid-L4 dpy28(y1);him-8(e1489) 25dC 30hrs post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans CB4689 whole organism larva: L4 larva male 9/29/09 11/16/09 released SRX004868
2326 RNAseq - mid-L1 20dC 4hrs post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: L1 larva 9/29/09 11/16/09 released SRX004867
2327 3' UTR Staged 454 Sequencing - L1 - alignments Piano Piano RACE gene model Caenorhabditis elegans N2 whole organism larva: L1 larva 9/29/09 11/16/09 released GSM446652
2328 3' UTR Staged 454 Sequencing - L2 - alignments Piano Piano RACE gene model Caenorhabditis elegans N2 whole organism larva: L2 larva 9/29/09 11/16/09 released GSM446653
2329 3' UTR Staged 454 Sequencing - L3 - alignments Piano Piano RACE gene model Caenorhabditis elegans N2 whole organism larva: L3 larva 9/29/09 11/16/09 released GSM446654
2330 3' UTR Staged 454 Sequencing - L4 - alignments Piano Piano RACE gene model Caenorhabditis elegans N2 whole organism larva: L4 larva 9/29/09 11/16/09 released GSM446655
2331 3' UTR Staged 454 Sequencing - embryo - alignments Piano Piano RACE gene model Caenorhabditis elegans N2 whole organism embryo: embryo 9/29/09 11/16/09 released GSM446651
2332 3' UTR Staged 454 Sequencing - hermaphrodite adult - alignments Piano Piano RACE gene model Caenorhabditis elegans N2 whole organism adult: adult 9/29/09 11/16/09 released GSM446656
2333 3' UTR Staged 454 Sequencing - male adult - alignments Piano Piano RACE gene model Caenorhabditis elegans CB1489 whole organism adult: adult male 9/29/09 11/16/09 released GSM446657
2334 3' UTR Staged 454 Sequencing - daf-11 - alignments Piano Piano RACE gene model Caenorhabditis elegans DR47 whole organism larva: dauer larva 9/29/09 11/16/09 released GSM446661
2335 3' UTR Staged 454 Sequencing - daf-2 - alignments Piano Piano RACE gene model Caenorhabditis elegans CB1370 whole organism larva: dauer larva 9/29/09 11/16/09 released GSM446658
2336 3' UTR Staged 454 Sequencing - daf-7 - alignments Piano Piano RACE gene model Caenorhabditis elegans CB1372 whole organism larva: dauer larva 9/29/09 11/16/09 released GSM446659
2337 3' UTR Staged 454 Sequencing - daf-9 - alignments Piano Piano RACE gene model Caenorhabditis elegans DR2281 whole organism larva: dauer larva 9/29/09 11/16/09 released GSM446660
2338 Histone_H3K36me2_N2_EEMB_(AB9049_H3K36ME2608457_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K36Me2;AbName=H3K36Me2;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/30/09 11/27/09 released , GSE22724, GSM562724
2339 Histone_H3K9me3_N2_EEMB_2_(AB8898_H3K9ME3339901_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 9/30/09 11/27/09 released , GSE22725, GSM562725
2340 Dm_4dFMatedOvary_TotalRNA_531_532_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE ovary adult: adult stage 9/30/09 10/9/09 released Dro2_AS_Dm_MatedOvary_F_4d_940.gff GSE23231, GSM571128, GSM571128, GSM571129
2341 Dm_1dFVirginHead_TotalRNA_497_498_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE adult head adult: adult stage 9/30/09 10/9/09 released Dro2_AS_Dm_VirginHead_F_1d_941.gff GSE23232, GSM571130, GSM571130, GSM571131
2342 Dm_4dFVirginHead_TotalRNA_515_516_38bp Celniker Gingeras tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE adult head adult: adult stage 9/30/09 10/9/09 released Dro2_AS_Dm_VirginHead_F_4d_942.gff GSE23233, GSM571132, GSM571132, GSM571133
2343 RNAseq - lin-35(n745) mid-L1 25dC 4.0hrs post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans MT10430 whole organism larva: L1 larva 9/30/09 11/16/09 released SRX004869
2345 RNAseq - Adult spe-9 23dC 8days post-L4 molt sequences & alignment Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans BA671 whole organism adult: adult 9/30/09 11/16/09 released SRX008136
2346 RNAseq - embryo him-8 20dC post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans CB1489 whole organism embryo: embryo 9/30/09 11/16/09 released SRX011569
2347 RNAseq - dauer daf-2 25dC 91hrs post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans CB1370 whole organism larva: dauer larva 9/30/09 11/16/09 released SRX008138
2349 RNAseq - dauer exit daf-2 25dC 91hrs 15dC 12hrs post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans CB1370 whole organism larva: post dauer stage 9/30/09 11/16/09 released SRX008140
2351 RNAseq - mid-L2 25dC 14 hrs post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Version=3 Caenorhabditis elegans N2 whole organism larva: L2 larva 10/1/09 11/19/09 released SRX001872
2352 RNAseq - mid-L3 25dC 25hrs post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: L3 larva 10/1/09 11/19/09 released SRX001875
2353 RNAseq - mid-L4 25dC 36hrs post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism larva: L4 larva 10/1/09 11/19/09 released SRX001874
2354 RNAseq - Young Adult 25dC 46hrs post-L1 sequences & alignment Waterston Waterston RNA-seq RNA profiling Version=2 Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 10/1/09 11/16/09 released SRX001873
2364 Negative_control_No_Antibody_N2_EEMB_(NA_N2_EEMB) Lieb Strome ChIP-chip chromatin Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 10/1/09 11/27/09 released , GSE22726, GSM562726, GSM562727
2371 deprecated by 2554 Lai_GSM399107_male-body Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S abdomen, thorax adult: adult stage 10/2/09 12/23/09 replaced GSM399107
2372 deprecated by 2555 Lai_GSM399106_female-body Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S abdomen, thorax adult: adult stage 10/2/09 12/23/09 replaced GSM399106
2373 deprecated by 2556 Lai_GSM360262_0-2day_pupae Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism pupae: pupal stage 10/2/09 12/23/09 replaced GSM360262
2374 Lai_GSM399110_Kc Lai Lai RNA-seq RNA profiling Drosophila melanogaster Kc167 2/4/10 2/4/10 released GSM399110
2375 Lai_GSM371638_S2-NP Lai Lai RNA-seq RNA profiling Drosophila melanogaster S2 2/4/10 2/4/10 released GSM371638
2376 Lai_GSM399105_imaginal-disc Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S imaginal disc adult: adult stage 10/2/09 2/3/10 released GSM399105
2379 Lai_GSM280087_S2cells_Ago2IP Lai Hannon RNA-seq RNA profiling Target=HA;AbName=HA-Peroxidase Drosophila melanogaster S2-DRSC 10/2/09 2/2/10 released GSM280087
2380 Lai_GSM280088_S2cells_Ago1IP Lai Hannon RNA-seq RNA profiling Target=Ago1;AbName=Ago1 Drosophila melanogaster S2-DRSC 10/2/09 2/2/10 released GSM280088
2381 Lai_GSM280086_adult_ovaries_AGO2IP Lai Hannon RNA-seq RNA profiling Target=HA;AbName=HA-Peroxidase Drosophila melanogaster Adult ovaries 10/2/09 12/23/09 released GSM280086
2382 Negative_control_Antibody_N2_EEMB_(SS00050_IGG_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=none;AbName=SS00050_IGG;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 10/2/09 11/27/09 released , GSE22727, GSM562728, GSM562729
2383 deprecated by 2544 CGH Salivary Y cn bw sp MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp larval salivary gland mixed: cleavage stage, early extended germ band stage, embryonic stage, larval stage, pre-blastoderm stage, third instar larval stage, embryonic stage 1-9 9/21/09 10/2/09 replaced salivary_244_trough_peaks.gff
2384 CGH Follicle OregonR-mod MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster Oregon-R-modENCODE oocyte associated follicle cell mixed: adult stage, cleavage stage, early extended germ band stage, embryonic stage, pre-blastoderm stage, embryonic stage 1-9 9/21/09 10/2/09 released follicle_244_peaks.gff GSM432739
2385 CGH Follicle Cells Orr-Weaver MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=616;ArrayPlatform=Agilent Drosophila melanogaster Oregon-R Orr-Weaver oocyte associated follicle cell mixed: adult stage, cleavage stage, early extended germ band stage, embryonic stage, pre-blastoderm stage, embryonic stage 1-9 9/21/09 10/2/09 released follicle_188_peaks.gff GSM432742
2386 deprecated by 2545 CGH Salivary OregonR-Orr-Weaver MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=616;ArrayPlatform=Agilent Drosophila melanogaster Oregon-R Orr-Weaver larval salivary gland mixed: cleavage stage, early extended germ band stage, embryonic stage, larval stage, pre-blastoderm stage, third instar larval stage, embryonic stage 1-9 9/21/09 10/2/09 replaced salivary_188_trough_peaks.gff
2387 RNAseq - dauer entry daf-2 25dC 48hrs post-L1 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans CB1370 whole organism larva: L2d-dauer molt 10/2/09 11/16/09 released SRX008139
2388 deprecated by 2493 superseded by 2800 Dev Timecourse Embryo 16-18h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 17 10/2/09 10/7/09 replaced SRR023600, SRR023707, SRR023715, SRR023720, SRR023751, SRR023826
2389 superseded by 2796 Dev Timecourse Embryo 0-2h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, pre-blastoderm stage, embryonic stage 1-2 10/5/09 10/8/09 replaced SRR023199, SRR023659, SRR023663, SRR023671, SRR023747, SRR023755, SRR024013, SRR027110
2390 deprecated by 2490 Dev Timecourse Embryo 4-6h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 10/5/09 10/8/09 replaced SRR023539, SRR023669, SRR023696, SRR023746, SRR023836, SRR024014
2391 superseded by 2806 Dev Timecourse Embryo 6-8h RNA-Seq Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: extended germ band stage, late extended germ band stage, embryonic stage 11-12 10/5/09 10/8/09 replaced SRR023504, SRR023654, SRR023668, SRR023688, SRR023691, SRR023732, SRR024009, SRR024217, SRR027113
2392 superseded by 2807 Dev Timecourse Embryo 8-10h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: late extended germ band stage, embryonic stage 12-13 9/18/09 10/8/09 replaced SRR023549, SRR023596, SRR023603, SRR023657, SRR023701, SRR023749, SRR023750, SRR023754, SRR023759, SRR024219
2393 deprecated by 2492 superseded by 2801 Dev Timecourse Embryo 18-20h RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism embryo: egg stage, embryonic stage, late embryonic stage, embryonic stage 17 10/5/09 10/7/09 replaced SRR023503, SRR023599, SRR023673, SRR023682, SRR023686, SRR023699, SRR023700, SRR024215, SRR027114
2394 superseded by 2811 Dev Timecourse L3 PS1-2 RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: larval stage, third instar larval stage 10/5/09 10/8/09 replaced SRR023546, SRR023608, SRR023638, SRR023640, SRR023697, SRR023726, SRR023758
2395 deprecated by 2496 superseded by 2812 Dev Timecourse L3 PS3-6 RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism larva: larval stage 10/5/09 10/8/09 replaced SRR023505, SRR023676, SRR023683, SRR023690, SRR023692, SRR023742, SRR027108
2396 superseded by 2793 Dev Timecourse Adult Female Eclosure+30d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 10/5/09 10/8/09 replaced SRR023548, SRR023598, SRR023674, SRR023675, SRR023681, SRR023693, SRR023712, SRR023757
2397 superseded by 2791 Dev Timecourse Adult Male Eclosure+5d RNA-Seq TopHat Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster y; cn bw sp whole organism adult: adult stage 10/5/09 10/8/09 replaced SRR023550, SRR023605, SRR023606, SRR023642, SRR023655, SRR023658, SRR023672, SRR023679, SRR023709, SRR023710, SRR023713
2398 Histone_H3K9me3_N2_L3_(HK00009_H3K9ME32F3_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 10/7/09 2/17/10 released , GSE22728, GSM562730, GSM562731
2399 Histone_H3K36me2_N2_L3_(HK00012_H3K36ME22C3_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 10/7/09 2/17/10 released , GSE22729, GSM562732, GSM562733
2400 Histone_H3K27me3_N2_L3_(HK00013_H3K27ME31E7_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3K27Me3;AbName=H3K27Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 10/8/09 2/17/10 released , GSE22730, GSM562734, GSM562735
2401 Histone_H3K36me3_N2_L3_(HK00001_H3K36ME313C9_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3K36Me3;AbName=H3K36Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 10/8/09 2/17/10 released , GSE22731, GSM562736, GSM562737
2402 Histone_H3K4me2_N2_L3_(WA30834809_H3K4ME2_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3K4Me2;AbName=H3K4Me2;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 10/8/09 2/17/10 released , GSE22732, GSM562738, GSM562739
2403 Tissue totalRNA isolation Celniker Cherbas Sample creation (metadata only) Drosophila melanogaster Oregon-R-modENCODE ovary, adult head adult: adult stage 10/8/09 10/9/09 released
2406 Histone_H3K9me2_N2_L3_(HK00008_H3K9ME26D11_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 10/11/09 2/17/10 released , GSE22733, GSM562740, GSM562741
2407 Histone_H3_N2_L3_2_(AR0144_H3144_N2_L3) Lieb Ahringer ChIP-chip chromatin modification Target=H3;AbName=H3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 10/11/09 2/17/10 released , GSE22734, GSM562742, GSM562743
2408 Histone_H3_N2_L3_1_(AR0144_H3144_N2_L3_LM) Lieb Ahringer ChIP-chip chromatin modification Target=H3;AbName=H3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 10/11/09 2/17/10 released GSE22735, GSM562744, GSM562745, GSM562746
2409 Histone_H3_N2_L3_(AB1791_H3_N2_L3_new) Lieb Ahringer ChIP-chip chromatin modification Target=H3;AbName=H3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism larva: L3 larva 10/12/09 2/17/10 released , GSE22736, GSM562747, GSM562748
2410 Histone_H3K79me1_N2_EEMB_(AB2886_H3K79ME1361912_N2_EEMB) Lieb Lieb ChIP-chip chromatin modification Target=H3K4Me3;AbName=H3K4Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 10/12/09 11/27/09 released , GSE22737, GSM562749, GSM562750
2416 Snyder_DPY27_GFP_emb Snyder Snyder ChIP-seq chromatin Target=dpy-27;AbName=eGFP Caenorhabditis elegans OP32 whole organism embryo: embryo 10/13/09 11/28/09 released Snyder_DPY27_GFP_emb_combined_peaks.GFF3 GSM388727
2417 deprecated by 3155 Snyder_EOR-1_GFP_L3 Snyder Snyder ChIP-seq chromatin Target=eor-1;AbName=eGFP Caenorhabditis elegans OP81 whole organism larva: L3 larva 10/13/09 11/28/09 replaced Snyder_EOR-1_GFP_L3_combined_peaks.GFF3 GSM435301
2418 Snyder_HLH-8_GFP_L3 Snyder Snyder ChIP-seq chromatin Target=hlh-8;AbName=eGFP Caenorhabditis elegans OP74 whole organism larva: L3 larva 10/13/09 11/28/09 released Snyder_HLH-8_GFP_L3_combined_peaks.GFF3 GSM435317
2429 Snyder_LIN-11_GFP_L2 Snyder Snyder ChIP-seq chromatin Target=lin-11;AbName=eGFP Caenorhabditis elegans OP62 whole organism larva: L2 larva 10/13/09 11/28/09 released Snyder_LIN-11_GFP_L2_combined_peaks.GFF3
2430 Snyder_UNC-130_GFP_L1 Snyder Snyder ChIP-seq chromatin Target=unc-130;AbName=eGFP Caenorhabditis elegans OP77 whole organism larva: L1 larva 10/13/09 11/28/09 released Snyder_UNC-130_GFP_L1_combined_peaks.GFF3
2431 Snyder_HLH-1_GFP_emb Snyder Snyder ChIP-seq chromatin Target=hlh-1;AbName=eGFP Caenorhabditis elegans OP64 whole organism embryo: embryo 10/13/09 11/28/09 released Snyder_HLH-1_GFP_emb_combined_peaks.GFF3
2432 Snyder_LIN-39_GFP_L3 Snyder Snyder ChIP-seq chromatin Target=lin-39;AbName=eGFP Caenorhabditis elegans OP18 whole organism larva: L3 larva 10/13/09 11/28/09 released Snyder_LIN-39-GFP_L3_combined_peaks.GFF3
2433 Snyder_NHR-6_GFP_L2 Snyder Snyder ChIP-seq chromatin Target=nhr-6;AbName=eGFP Caenorhabditis elegans OP90 whole organism larva: L2 larva 10/13/09 11/28/09 released Snyder_NHR-6_GFP_L2_combined_peaks.GFF3
2434 deprecated by 3156 Snyder_ALR-1_GFP_L2 Snyder Snyder ChIP-seq chromatin Target=alr-1;AbName=eGFP Caenorhabditis elegans OP200 whole organism larva: L2 larva 10/13/09 11/27/09 replaced Snyder_ALR-1_GFP_L2_combined_peaks.GFF3
2435 Snyder_N2_POLII_eemb Snyder Snyder ChIP-seq chromatin Target=RNA Polymerase II;AbName=RNA Polymerase II Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 10/13/09 11/28/09 released Snyder_N2_POLII_eemb_combined_peaks.GFF3
2436 Snyder_N2_POLII_lemb Snyder Snyder ChIP-seq chromatin Target=RNA Polymerase II;AbName=RNA Polymerase II Caenorhabditis elegans N2 whole organism embryo: elongating embryo, enclosing embryo, fully-elongated embryo, late cleavage stage embryo 10/13/09 11/28/09 released Snyder_N2_POLII_lemb_combined_peaks.GFF3
2437 Snyder_N2_POLII_L1 Snyder Snyder ChIP-seq chromatin Target=RNA Polymerase II;AbName=RNA Polymerase II Caenorhabditis elegans N2 whole organism larva: L1 larva 10/13/09 11/28/09 released Snyder_N2_POLII_L1_combined_peaks.GFF3
2438 Snyder_N2_POLII_L2 Snyder Snyder ChIP-seq chromatin Target=RNA Polymerase II;AbName=RNA Polymerase II Caenorhabditis elegans N2 whole organism larva: L2 larva 10/13/09 11/28/09 released Snyder_N2_POLII_L2_combined_peaks.GFF3
2439 Snyder_N2_POLII_L3 Snyder Snyder ChIP-seq chromatin Target=RNA Polymerase II;AbName=RNA Polymerase II Caenorhabditis elegans N2 whole organism larva: L3 larva 10/13/09 11/28/09 released Snyder_N2_POLII_L3_combined_peaks.GFF3
2440 Snyder_N2_POLII_L4 Snyder Snyder ChIP-seq chromatin Target=RNA Polymerase II;AbName=RNA Polymerase II Caenorhabditis elegans N2 whole organism larva: L4 larva 10/13/09 11/28/09 released Snyder_N2_POLII_L4_combined_peaks.GFF3
2441 Snyder_N2_POLII_YA Snyder Snyder ChIP-seq chromatin Target=RNA Polymerase II;AbName=RNA Polymerase II Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 10/13/09 11/28/09 released Snyder_N2_POLII_YA_combined_peaks.GFF3
2442 Histone_H3K79me2_N2_EEMB_(AB3594_H3K79ME2346021_N2_EEMB) Lieb Lieb ChIP-chip chromatin modification Target=H3K79Me2;AbName=H3K79Me2;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 10/13/09 11/27/09 released , GSE22738, GSM562751, GSM562752
2443 Histone_H3K79me3_N2_EEMB_(AB2621_H3K79ME3361576_N2_EEMB) Lieb Lieb ChIP-chip chromatin modification Target=H3K79Me3;AbName=H3K79Me3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 10/14/09 11/27/09 released , GSE22739, GSM562753, GSM562754
2444 Histone_H3K9me2_N2_EEMB_(HK00008_H3K9ME26D11_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 10/14/09 11/27/09 released , GSE22740, GSM562755, GSM562756
2445 deprecated by 3198 Histone_H3K4me2_N2_EEMB_(WA30834809_H3K4ME2_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K4Me2;AbName=H3K4Me2;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 10/15/09 11/27/09 replaced , GSE22741, GSM562757, GSM562758
2446 HCP-3_CENP-A_N2_MXEMB_(OD00079_HCP3_N2_MXEMB) Lieb Desai ChIP-chip chromatin Target=hcp-3;AbName=OD00079_HCP3;Array=40bp86bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: proliferating embryo 10/15/09 2/17/10 released , GSE22742, GSM562759, GSM562760, GSM562761, GSM562762, GSM562763, GSM562764, GSM562765, GSM562766, GSM562767, GSM562768
2447 L3_N2_RNA_Expression Lieb Lieb 10/15/09 uploaded
2448 L3_N2_RNA_Expression_ME3 Lieb Lieb 10/15/09 uploaded
2450 deprecated by 3157 Snyder_PES1_GFP_L4 Snyder Snyder ChIP-seq chromatin Target=pes-1;AbName=eGFP Caenorhabditis elegans OP87 whole organism larva: L4 larva 10/15/09 11/28/09 replaced Snyder_PES1_GFP_L4_combined_peaks.GFF3
2451 Snyder_GEI11_GFP_L4 Snyder Snyder ChIP-seq chromatin Target=gei-11;AbName=eGFP Caenorhabditis elegans OP179 whole organism larva: L4 larva 10/15/09 11/28/09 released Snyder_GEI11_GFP_L4_combined_peaks.GFF3
2452 deprecated by 3158 Snyder_PHA4_GFP_L2 Snyder Snyder ChIP-seq chromatin Target=pha-4;AbName=eGFP Caenorhabditis elegans OP37 whole organism larva: L2 larva 10/15/09 11/28/09 replaced Snyder_PHA4_GFP_L2_combined_peaks.GFF3
2453 deprecated by 3159 Snyder_EGL5_GFP_L3 Snyder Snyder ChIP-seq chromatin Target=egl-5;AbName=eGFP Caenorhabditis elegans OP54 whole organism larva: L3 larva 10/15/09 11/28/09 replaced Snyder_EGL5_GFP_L3_combined_peaks.GFF3
2454 L3-L4 hypodermal cells tiling array Waterston Miller tiling array: RNA transcription Target=dpy-7;AbName=EZview Red FLAG M2 Affinity Gel;Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC1790 hypodermis larva: L3-L4 molt 10/15/09 11/19/09 released L3-L4-hypodermis_tars_maxgap30_minrun100_thresh9.87.gff3 GSE23287, GSM571540, GSM571540, GSM571541, GSM571542
2455 3' UTR Staged 454 Sequencing - L1 - sequences Piano Piano RACE raw sequences Caenorhabditis elegans N2 whole organism larva: L1 larva 10/18/09 11/4/09 released GSM446652
2456 3' UTR Staged 454 Sequencing - L2 - sequences Piano Piano RACE raw sequences Caenorhabditis elegans N2 whole organism larva: L2 larva 10/18/09 11/4/09 released GSM446653
2457 3' UTR Staged 454 Sequencing - L3 - sequences Piano Piano RACE raw sequences Caenorhabditis elegans N2 whole organism larva: L3 larva 10/18/09 11/4/09 released GSM446654
2458 3' UTR Staged 454 Sequencing - L4 - sequences Piano Piano RACE raw sequences Caenorhabditis elegans N2 whole organism larva: L4 larva 10/18/09 11/4/09 released GSM446655
2459 3' UTR Staged 454 Sequencing - male adult - sequences Piano Piano RACE raw sequences Caenorhabditis elegans CB1489 whole organism adult: adult male 10/18/09 11/4/09 released GSM446657
2460 3' UTR Staged 454 Sequencing - hermaphrodite adult - sequences Piano Piano RACE raw sequences Caenorhabditis elegans N2 whole organism adult: adult 10/18/09 11/4/09 released GSM446656
2461 3' UTR Staged 454 Sequencing - daf-2 - sequences Piano Piano RACE raw sequences Caenorhabditis elegans CB1370 whole organism larva: dauer larva 10/18/09 11/4/09 released GSM446658
2462 3' UTR Staged 454 Sequencing - daf-7 - sequences Piano Piano RACE raw sequences Caenorhabditis elegans CB1372 whole organism larva: dauer larva 10/18/09 11/4/09 released GSM446659
2463 3' UTR Staged 454 Sequencing - daf-9 - sequences Piano Piano RACE raw sequences Caenorhabditis elegans DR2281 whole organism larva: dauer larva 10/18/09 11/4/09 released GSM446660
2464 3' UTR Staged 454 Sequencing - daf-11 - sequences Piano Piano RACE raw sequences Caenorhabditis elegans DR47 whole organism larva: dauer larva 10/18/09 11/4/09 released GSM446661
2465 3' UTR Staged 454 Sequencing - embryo - sequences Piano Piano RACE raw sequences Caenorhabditis elegans N2 whole organism embryo: embryo 10/19/09 11/6/09 released GSM446651
2466 superseded by 2846 RNAseq - mid-L2 25dC 14hrs post-L1 genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/22/09 11/20/09 replaced mid-L2_25dC_14hrs_post-L1.wormbase_transcripts.ws170.gff3, mid-L2_25dC_14hrs_post-L1.confirmed_introns_all.gff3, mid-L2_25dC_14hrs_post-L1.confirmed_polya.gff3, mid-L2_25dC_14hrs_post-L1.confirmed_splice_leaders.gff3, mid-L2_25dC_14hrs_post-L1.genelets.RNASEQ.ws170.gff3 SRX001872
2467 superseded by 2847 RNAseq - mid-L3 20dC 25hrs post-L1 genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/22/09 11/20/09 replaced mid-L3_20dC_25hrs_post-L1.confirmed_introns_all.gff3, mid-L3_20dC_25hrs_post-L1.confirmed_splice_leaders.gff3, mid-L3_20dC_25hrs_post-L1.confirmed_polya.gff3, mid-L3_20dC_25hrs_post-L1.genelets.RNASEQ.ws170.gff3, mid-L3_20dC_25hrs_post-L1.wormbase_transcripts.ws170.gff3 SRX001875
2468 superseded by 2848 RNAseq - mid-L4 20dC 36hrs post-L1 genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/22/09 11/20/09 replaced mid-L4_20dC_36hrs_post-L1.confirmed_introns_all.gff3, mid-L4_20dC_36hrs_post-L1.confirmed_splice_leaders.gff3, mid-L4_20dC_36hrs_post-L1.confirmed_polya.gff3, mid-L4_20dC_36hrs_post-L1.wormbase_transcripts.ws170.gff3, mid-L4_20dC_36hrs_post-L1.genelets.RNASEQ.ws170.gff3 SRX001874
2469 superseded by 2845 RNAseq - mid-L1 20dC 4hrs post-L1 genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/25/09 11/20/09 replaced mid-L1_20dC_4hrs_post-L1.confirmed_splice_leaders.gff3, mid-L1_20dC_4hrs_post-L1.wormbase_transcripts.ws170.gff3, mid-L1_20dC_4hrs_post-L1.confirmed_polya.gff3, mid-L1_20dC_4hrs_post-L1.genelets.RNASEQ.ws170.gff3, mid-L1_20dC_4hrs_post-L1.confirmed_introns_all.gff3 SRX004867
2470 superseded by 2836 RNAseq - Young Adult 25dC 46hrs post-L1 genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/25/09 11/20/09 replaced Young_Adult_25dC_46hrs_post-L1.confirmed_splice_leaders.gff3, Young_Adult_25dC_46hrs_post-L1.genelets.RNASEQ.ws170.gff3, Young_Adult_25dC_46hrs_post-L1.confirmed_introns_all.gff3, Young_Adult_25dC_46hrs_post-L1.confirmed_polya.gff3, Young_Adult_25dC_46hrs_post-L1.wormbase_transcripts.ws170.gff3 SRX001873
2471 superseded by 2844 RNAseq - male mid-L4 dpy28(y1);him-8(e1489) 25dC 30hrs post-L1 genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/25/09 11/20/09 replaced male_mid-L4_25dC_30hrs_post-L1.wormbase_transcripts.ws170.gff3, male_mid-L4_25dC_30hrs_post-L1.confirmed_splice_leaders.gff3, male_mid-L4_25dC_30hrs_post-L1.confirmed_introns_all.gff3, male_mid-L4_25dC_30hrs_post-L1.confirmed_polya.gff3, male_mid-L4_25dC_30hrs_post-L1.genelets.RNASEQ.ws170.gff3 SRX004868
2472 superseded by 2835 RNAseq - Adult spe-9 23dC 8days post-L4 molt genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/27/09 11/20/09 replaced Adult_spe-9_23dC_8days_post-L4_molt.confirmed_polya.gff3, Adult_spe-9_23dC_8days_post-L4_molt.confirmed_splice_leaders.gff3, Adult_spe-9_23dC_8days_post-L4_molt.genelets.RNASEQ.ws170.gff3, Adult_spe-9_23dC_8days_post-L4_molt.wormbase_transcripts.ws170.gff3, Adult_spe-9_23dC_8days_post-L4_molt.confirmed_introns_all.gff3 SRX008136
2473 superseded by 2840 RNAseq - early embryo genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/27/09 11/11/09 replaced early_embryo.wormbase_transcripts.ws170.gff3, early_embryo.confirmed_splice_leaders.gff3, early_embryo.genelets.RNASEQ.ws170.gff3, early_embryo.confirmed_introns_all.gff3, early_embryo.confirmed_polya.gff3 SRX004863
2474 superseded by 2841 RNAseq - embryo him-8 20dC post-L1 genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/27/09 11/20/09 replaced embryo_him-8_20dC_post-L1.confirmed_introns_all.gff3, embryo_him-8_20dC_post-L1.genelets.RNASEQ.ws170.gff3, embryo_him-8_20dC_post-L1.wormbase_transcripts.ws170.gff3, embryo_him-8_20dC_post-L1.confirmed_polya.gff3, embryo_him-8_20dC_post-L1.confirmed_splice_leaders.gff3 SRX011569
2475 superseded by 2842 RNAseq - late embryo 20dC 4.5hrs post-early embryo genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 10/27/09 11/20/09 replaced late_embryo_20dC_4.5hrs_post-early_embryo.confirmed_polya.gff3, late_embryo_20dC_4.5hrs_post-early_embryo.genelets.RNASEQ.ws170.gff3, late_embryo_20dC_4.5hrs_post-early_embryo.confirmed_splice_leaders.gff3, late_embryo_20dC_4.5hrs_post-early_embryo.confirmed_introns_all.gff3, late_embryo_20dC_4.5hrs_post-early_embryo.wormbase_transcripts.ws170.gff3 SRX004865
2476 superseded by 2843 RNAseq - lin-35(n745) mid-L1 25dC 4.0hrs post-L1 genelets Waterston Waterston 10/27/09 replaced
2477 superseded by 2837 RNAseq - dauer daf-2 25dC 91hrs post-L1 genelets Waterston Waterston 10/27/09 replaced
2478 superseded by 2838 RNAseq - dauer entry daf-2 25dC 48hrs post-L1 genelets Waterston Waterston 10/27/09 replaced
2479 superseded by 2839 RNAseq - dauer exit daf-2 25dC 91hrs 15dC 12hrs post-L1 genelets Waterston Waterston 10/27/09 replaced
2482 3' UTRome 454 sequencing & alignment Piano Piano RNA-seq RNA profiling Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, embryo, larva 10/16/09 11/19/09 released GSM469976
2483 smallRNA from mixed-stage embryos (GSM427346) Piano Rajewsky RNA-seq raw sequences Caenorhabditis elegans TX189 whole organism embryo: embryo 10/14/09 11/17/09 released GSM427346
2484 3' UTRome Solexa sequencing & alignment Piano Piano Alignment RNA profiling Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, embryo, larva 10/6/09 11/19/09 released GSM469439
2485 smallRNAs from two-to-four cell C. elegans embryos (GSM427297) Piano Rajewsky RNA-seq raw sequences Caenorhabditis elegans TX189 whole organism embryo: 2-cell embryo, 4-cell embryo 10/16/09 11/17/09 released GSM427297
2486 smallRNAs from one cell stage C. elegans embryos (GSM427301) Piano Rajewsky RNA-seq raw sequences Caenorhabditis elegans TX189 whole organism embryo: 1-cell embryo 10/16/09 11/17/09 released GSM427301
2487 smallRNAs from post-gastrulation C. elegans embryos (GSM427332) Piano Rajewsky RNA-seq raw sequences Caenorhabditis elegans TX189 whole organism embryo: elongating embryo, enclosing embryo, fully-elongated embryo, late cleavage stage embryo 10/16/09 11/17/09 released GSM427332
2488 smallRNAs from older, fixed C. elegans embryos (GSM427344) Piano Rajewsky RNA-seq raw sequences Caenorhabditis elegans TX189 whole organism embryo: 12-cell embryo, 28-cell embryo, elongating embryo, enclosing embryo, fully-elongated embryo, gastrulating embryo, late cleavage stage embryo 10/16/09 11/17/09 released GSM427344
2489 small RNAs from living one cell C. elegans embryos (GSM427345) Piano Rajewsky RNA-seq raw sequences Caenorhabditis elegans TX189 whole organism embryo: 1-cell embryo 10/16/09 11/17/09 released GSM427345
2499 embryo_BAG_neurons_tiling_array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans MT17370 BAG embryo: embryo 11/4/09 2/13/10 released emb-BAG_tars_maxgap30_minrun100_thresh9.36.gff3 GSE23769, GSM586712, GSM586713, GSM586714
2500 embryo_PVC_neurons_tiling_array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC2015 PVC embryo: embryo 11/5/09 2/15/10 released emb-PVC_tars_maxgap30_minrun100_thresh9.60.gff3
2501 3' UTRome sample pools Piano Piano RACE Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, embryo, larva 11/9/09 11/19/09 released
2502 600_mM_Salt_Extracted_Chromatin_Pellet Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2Av 2/2/09 3/22/09 released GSM333864
2503 150_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2Av 2/2/09 3/22/09 released GSM333836
2504 H2Av_EDTA Henikoff Henikoff ChIP-chip chromatin SaltConcentration=15mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2Av 2/2/09 3/22/09 released GSM333849
2505 H2A_EDTA Henikoff Henikoff ChIP-chip chromatin SaltConcentration=15mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2A 2/2/09 3/22/09 released GSM333848
2506 Nucleosome_Density_S2 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=15mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2Av 2/2/09 3/22/09 released GSM333835
2507 Fly_embryos_1-3_hr_150_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: embryonic stage 3-6 9/20/09 11/24/09 released
2508 Fly_embryos_1-3_hr_600_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: embryonic stage 3-6 9/20/09 11/24/09 released
2509 Fly_embryos_1-3_hr_600_mM_Salt_Extracted_Chromatin_Pellet Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: embryonic stage 3-6 9/20/09 11/24/09 released
2510 Fly_embryos_4-6_hr_150_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: Embyro 4-6 h, early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 9/20/09 11/24/09 released
2511 Fly_embryos_4-6_hr_600_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: Embyro 4-6 h, early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 9/20/09 11/24/09 released
2512 Fly_embryos_4-6_hr_600_mM_Salt_Extracted_Chromatin_Pellet Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster B3 whole organism embryo: Embyro 4-6 h, early extended germ band stage, extended germ band stage, late extended germ band stage, embryonic stage 9-11 9/20/09 11/24/09 released
2513 Fly_wing_disc_80_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster ML-DmD16-c3 9/20/09 11/24/09 released
2514 Fly_wing_disc_150_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster ML-DmD16-c3 9/20/09 11/24/09 released
2515 Fly_wing_disc_600_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster ML-DmD16-c3 9/20/09 11/24/09 released
2516 Fly_wing_disc_600_mM_Salt_Extracted_Chromatin_Pellet Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster ML-DmD16-c3 9/20/09 11/24/09 released
2517 80_mM_Salt_Extracted_Chromatin_S2 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-DRSC 2/2/09 5/3/09 released GSM387595
2518 80_mM_Salt_Extracted_Chromatin_H2A Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2A 2/2/09 5/3/09 released GSM333846
2519 80_mM_Salt_Extracted_Chromatin_H2Av Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2Av 2/2/09 5/3/09 released GSM333851
2520 80_mM_Salt_Extracted_Chromatin_H3.3 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H3.3 2/2/09 5/3/09 released GSM333850
2521 80-150_mM_Salt_Extracted_Chromatin_H2Av Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80-150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2Av 2/2/09 5/3/09 released GSM333859
2522 80-150_mM_Salt_Extracted_Chromatin_S2 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80-150mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-DRSC 2/2/09 5/3/09 released GSM387593
2523 80-600_mM_Salt_Extracted_Chromatin_H3.3 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80-600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H3.3 2/2/09 5/3/09 released GSM333852
2524 80-600_mM_Salt_Extracted_Chromatin_H2Av Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80-600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2Av 2/2/09 5/3/09 released GSM333856
2525 150-600_mM_Salt_Extracted_Chromatin_H2Av Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150-600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2Av 2/2/09 5/3/09 released GSM333832
2526 150-600_mM_Salt_Extracted_Chromatin_H3.3 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150-600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H3 2/2/09 5/3/09 released GSM333834
2527 150-600_mM_Salt_Extracted_Chromatin_S2 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=150-600mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-DRSC 2/2/09 5/3/09 released GSM387594
2528 Mononucleosomes_H3.3 Henikoff Henikoff ChIP-chip chromatin SaltConcentration=15mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H3.3 2/2/09 5/3/09 released GSM333837
2529 Mononucleosomes_H2Av Henikoff Henikoff ChIP-chip chromatin SaltConcentration=15mM ;Array=65bp;ArrayPlatform=Nimblegen Drosophila melanogaster S2-Mt-Bio-H2Av 2/2/09 5/3/09 released GSM333841
2530 superseded by 3085 D. Pseudoobscura male heads mRNA-seq Celniker Oliver RNA-seq RNA profiling Drosophila pseudoobscura pseudoobscura D. pseudoobscura 14011-0121.94 adult head adult: adult stage 11/20/09 2/13/10 replaced GSM499404
2531 80_mM_Embryonic_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=54bp;ArrayPlatform=Nimblegen Caenorhabditis elegans JJ2061 whole organism embryo: proliferating embryo 11/27/09 11/30/09 released GSM468561
2532 600_mM_Embryonic_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=54bp;ArrayPlatform=Nimblegen Caenorhabditis elegans JJ2061 whole organism embryo: proliferating embryo 11/27/09 11/30/09 released GSM468562
2533 600_mM_Embryonic_Salt_Extracted_Chromatin_Pellet Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=54bp;ArrayPlatform=Nimblegen Caenorhabditis elegans JJ2061 whole organism embryo: proliferating embryo 11/27/09 11/30/09 released GSM468571
2534 H3.3_80_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=54bp;ArrayPlatform=Nimblegen Caenorhabditis elegans JJ2061 whole organism embryo: proliferating embryo 11/27/09 11/30/09 released GSM468564
2535 H3.3_350_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=350mM ;Array=54bp;ArrayPlatform=Nimblegen Caenorhabditis elegans JJ2061 whole organism embryo: proliferating embryo 11/27/09 11/30/09 released GSM468560
2536 H3.3_600_mM_Salt_Extracted_Chromatin Henikoff Henikoff ChIP-chip chromatin SaltConcentration=600mM ;Array=54bp;ArrayPlatform=Nimblegen Caenorhabditis elegans JJ2061 whole organism embryo: proliferating embryo 11/27/09 11/30/09 released GSM468563
2537 Embryonic_Mononucleosomes Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=54bp;ArrayPlatform=Nimblegen Caenorhabditis elegans JJ2061 whole organism embryo: proliferating embryo 11/27/09 11/30/09 released GSM468574
2538 Adult_Mononucleosomes Henikoff Henikoff ChIP-chip chromatin SaltConcentration=80mM ;Array=54bp;ArrayPlatform=Nimblegen Caenorhabditis elegans JJ2061 whole organism larva: newly molted young adult hermaphrodite 11/27/09 11/30/09 released GSM468565
2539 Ahringer_L3_Worm_Samples_1 Lieb Ahringer sample creation (metadata only) Caenorhabditis elegans N2 whole organism larva: L3 larva 11/29/09 2/17/10 released
2540 Ahringer_L3_Worm_Samples_2 Lieb Ahringer sample creation (metadata only) Caenorhabditis elegans N2 whole organism larva: L3 larva 11/30/09 2/17/10 released
2541 HCP-3_CENP-A_N2_EEMB_(OD00079_HCP3_N2_EEMB) Lieb Strome ChIP-chip chromatin Target=hcp-3;AbName=OD00001_HCP3;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 12/9/09 2/17/10 released , GSE22743, GSM562769, GSM562770, GSM562771
2542 DAF-16_fastq_DCC_test Snyder Snyder ChIP-seq chromatin Target=daf-16;AbName=eGFP Caenorhabditis elegans TJ356 whole organism larva: L4 larva, L4-adult molt, newly molted young adult hermaphrodite 12/9/09 1/16/10 uploaded Snyder_DAF16_GFP_L4YA_combined_peaks.GFF3 GSM389648
2543 Lai_GSM360260_0_1day_pupae Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism pupae: pupal stage 12/15/09 1/4/10 released GSM360260
2544 CGH Salivary Y cn bw sp MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=470bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp larval salivary gland embryo: cleavage stage, early extended germ band stage, embryonic stage, pre-blastoderm stage, embryonic stage 1-9 7/17/09 12/16/09 released salivary_244_trough_peaks.gff GSM432735
2545 CGH Salivary OregonR-Orr-Weaver MacAlpine Orr-Weaver tiling array: DNA copy number variation Array=616;ArrayPlatform=Agilent Drosophila melanogaster Oregon-R Orr-Weaver larval salivary gland embryo: cleavage stage, early extended germ band stage, embryonic stage, pre-blastoderm stage, embryonic stage 1-9 7/20/09 12/16/09 released salivary_188_trough_peaks.gff GSM432737
2546 Lai_GSM360257_1st_instar_larvae Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism larva: first instar larval stage 12/15/09 12/23/09 released GSM360257
2548 embryo_pharyngeal_muscle_tiling_array Waterston Miller tiling array: RNA transcription Array=25 base pairs;ArrayPlatform=Affymetrix Caenorhabditis elegans NC1293 pharyngeal muscle cell embryo: embryo 12/17/09 2/13/10 released emb-PhM_tars_maxgap30_minrun100_thresh8.36.gff3 GSE23770, GSM586715, GSM586716, GSM586717
2549 CAGE sequencing of mixed embryo 5' ends Celniker Celniker CAGE RNA profiling Sequences=33669445 Drosophila melanogaster y; cn bw sp early embryonic cell, blastoderm cell, gastrula cell embryo: cleavage stage, extended germ band stage, gastrula stage, pre-blastoderm stage 12/17/09 2/15/10 released SRX015329
2550 Directed cDNA Full Insert Sequencing Celniker Celniker cDNA sequencing RNA profiling Sequences=1055 Drosophila melanogaster Oregon-R-P2, y; cn bw sp adult, adult head, embryo mixed: adult stage, embryonic stage, larval stage, prepupal stage, pupal stage, embryonic stage 17 12/18/09 2/15/10 released MIP.gff
2551 S2 Copy Number Variation MacAlpine MacAlpine DNA-seq copy number variation Drosophila melanogaster S2-DRSC 12/22/09 1/5/10 released GSE19956, GSM498668, GSM498669
2552 KC Copy Number Variation MacAlpine MacAlpine DNA-seq copy number variation Drosophila melanogaster Kc167 12/22/09 1/5/10 released GSE19957, GSM498670, GSM498671
2553 BG3 Copy Number Variation MacAlpine MacAlpine DNA-seq copy number variation Drosophila melanogaster ML-DmBG3-c2 12/22/09 1/5/10 released GSE19958, GSM498672, GSM498673
2554 Lai_GSM399107_male-body Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S abdomen, thorax adult: adult stage 10/2/09 12/24/09 released GSM399107
2555 Lai_GSM399106_female-body Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S abdomen, thorax adult: adult stage 10/2/09 12/26/09 released GSM399106
2556 Lai_GSM360262_0-2day_pupae Lai Lai RNA-seq RNA profiling Drosophila melanogaster Canton-S whole organism pupae: pupal stage 10/2/09 12/24/09 released GSM360262
2557 mass-spec_091015 Waterston MacCoss Mass spec RNA profiling Caenorhabditis elegans CB1489, N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, dauer larva, embryo, larva, newly molted young adult hermaphrodite 1/1/10 9/27/10 approved mass_spec_091015.gff3,
2558 E0-12h_HDAC11-494 White White ChIP-chip chromatin Target=HdacX;AbName=HDAC11-494;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/15/10 released MAT_E0-12h_HDAC11_494.bed.gff
2559 E0-12h_HDAC1-500 White White ChIP-chip chromatin Target=Rpd3;AbName=HDAC1-500;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/17/10 released MAT_E0-12h_HDAC1_500.bed.gff
2560 E0-12h_HDAC1-501 White White ChIP-chip chromatin Target=Rpd3;AbName=HDAC1-501;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/17/10 released MAT_E0-12h_HDAC1_501.bed.gff
2561 E0-12h_HDAC3-498 White White ChIP-chip chromatin Target=Hdac3;AbName=HDAC3-498;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/17/10 released MAT_E0-12h_HDAC3_498.bed.gff
2562 E0-12h_HDAC3-499 White White ChIP-chip chromatin Target=Hdac3;AbName=HDAC3-499;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/17/10 released MAT_E0-12h_HDAC3_499.bed.gff
2563 E0-12h_HDAC4a-492 White White ChIP-chip chromatin Target=HDAC4;AbName=HDAC4a-492;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/17/10 released MAT_E0-12h_HDAC4a_492.bed.gff
2564 E0-12h_HDAC4a-493 White White ChIP-chip chromatin Target=HDAC4;AbName=HDAC4a-493;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/16/10 released MAT_E0-12h_HDAC4a_493.bed.gff
2565 E0-12h_HDAC6-496 White White ChIP-chip chromatin Target=HDAC6;AbName=HDAC6-496;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/17/10 released MAT_E0-12h_HDAC6_496.bed.gff
2566 E0-12h_HDAC6-497 White White ChIP-chip chromatin Target=HDAC6;AbName=HDAC6-497;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/17/10 released MAT_E0-12h_HDAC6_497.bed.gff
2567 E0-12h_HDAC11-495 White White ChIP-chip chromatin Target=HdacX;AbName=HDAC11-495;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/5/10 2/17/10 released MAT_E0-12h_HDAC11_495.bed.gff
2568 Kc167_Trl White White ChIP-chip chromatin Target=Trl;AbName=KW3-Trl-D2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 1/6/10 2/18/10 released MAT_Kc167_Trl.bed.gff
2569 E-0-4h_bks White White ChIP-chip chromatin Target=sbb;AbName=bks;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 1/7/10 2/17/10 released E0-4_bks_pvalue_Dm_BDGPv5.bed.gff
2570 E0-4h_cad White White ChIP-chip chromatin Target=cad;AbName=cad-JR;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-9 1/7/10 2/17/10 released E0-4h_cad_pvalue_Dm_BDGPv5.bed.gff
2571 E0-8_D White White ChIP-chip chromatin Target=D;AbName=KW3-D-D2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-12 1/7/10 2/15/10 released E0-8_D_pvalue_Dm_BDGPv5.bed.gff
2572 E0-8h_disco White White ChIP-chip chromatin Target=disco;AbName=KW3-disco-D2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-12 1/7/10 2/15/10 released E0-8_disco_pvalue_Dm_BDGPv5.bed.gff
2573 E0-8h_GATAe White White ChIP-chip chromatin Target=GATAe;AbName=KW4-GATAe-D1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-12 1/7/10 2/17/10 released E0-8_GATAe_pvalue_Dm_BDGPv5.bed.gff
2574 E0-8h_h White White ChIP-chip chromatin Target=h;AbName=KW3-h-D1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-12 1/7/10 2/17/10 released E0-8_h_pvalue_Dm_BDGPv5.bed.gff
2575 E0-8h_hkb White White ChIP-chip chromatin Target=hkb;AbName=KW3-hkb-D1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-12 1/7/10 2/18/10 released E0-8_hkb_pvalue_Dm_BDGPv5.bed.gff
2576 E0-8h_jumu White White ChIP-chip chromatin Target=jumu;AbName=KW3-jumu-D2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-12 1/7/10 2/18/10 released E0-8_jumu_pvalue_Dm_BDGPv5.bed.gff
2577 E4-8h_sens White White ChIP-chip chromatin Target=sens;AbName=sens;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-12 1/7/10 2/18/10 released E4-8_sens_pvalue_Dm_BDGPv5.bed.gff
2578 7T-E4-8h_GFP White White ChIP-chip chromatin Target=cad;AbName=odg-GFP;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster 7T-CAD whole organism embryo: embryonic stage 9-12 1/8/10 11/3/10 uploaded 7T-E4-8h_GFP_pvalue_Dm_BDGPv5.bed.gff
2579 Kc_Kr White White ChIP-chip chromatin Target=Kr;AbName=KW3-Kr-D2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 1/8/10 2/18/10 uploaded Kc_Kr_pvalue_Dm_BDGPv5.bed.gff
2580 RNA-Seq - pathogen Harposporium 25dC 24hr exposure post-adulthood N2 sequences & alignments Waterston Waterston RNA-seq RNA profiling EnvironmentalTreatment=food:Harposporium Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 1/8/10 2/4/10 released SRX014006
2581 RNA-Seq - pathogen Harposporium control OP50 25dC 24hr exposure post-adulthood N2 sequences & alignments Waterston Waterston RNA-seq RNA profiling EnvironmentalTreatment=food:E. coli (OP50) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 1/10/10 2/4/10 released SRX014007
2582 RNA-seq - pathogen Smacescens 25dC 24hr exposure post-adulthood N2 sequences & alignment Waterston Waterston RNA-seq RNA profiling EnvironmentalTreatment=food:S. marcescens (Db11) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 1/10/10 2/4/10 released SRX014008
2583 RNA-seq - soma-only mid-L4 25dC 36hrs post-L1 JK1107 sequences & alignments Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans JK1107 whole organism larva: L4 larva 1/10/10 2/4/10 released SRX014010
2584 RNA-Seq - pathogen Smacescens control OP50 25dC 24hr exposure post-adulthood N2 sequences & alignments Waterston Waterston RNA-seq RNA profiling EnvironmentalTreatment=food:E. coli (OP50) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 1/10/10 2/4/10 released SRX014009
2585 ISO1_8-16_Ez White White ChIP-chip chromatin Target=E(z);AbName=KW4-E(z)-D2;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-13 1/13/10 2/18/10 released ISO1_8-16_Ez_COMBINED_DCC_merged.bed.gff
2586 Cell Line RNA-seq S2_DRSC multimapped reads Celniker Graveley RNA-seq RNA profiling Drosophila melanogaster S2-DRSC 1/14/10 2/13/10 released SRX003840, SRX003841
2587 RNA-Seq - pathogen Harposporium 25dC 24hr exposure post-adulthood N2 genelets Waterston Waterston RNA-seq RNA profiling EnvironmentalTreatment=food:Harposporium Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 1/14/10 2/1/10 released Adult_Harposporium_exposed_2_24hrs.confirmed_polya.gff3, Adult_Harposporium_exposed_2_24hrs.genelets.RNASEQ.ws170.gff3, Adult_Harposporium_exposed_2_24hrs.confirmed_splice_leaders.gff3, Adult_Harposporium_exposed_2_24hrs.wormbase_transcripts.ws170.gff3, Adult_Harposporium_exposed_2_24hrs.confirmed_introns_all.gff3 SRX014006
2588 RNA-Seq - pathogen Harposporium control OP50 25dC 24hr exposure post-adulthood N2 genelets Waterston Waterston RNA-seq RNA profiling EnvironmentalTreatment=food:E. coli (OP50) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 1/14/10 2/1/10 released Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs.wormbase_transcripts.ws170.gff3, Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs.confirmed_introns_all.gff3, Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs.confirmed_polya.gff3, Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs.confirmed_splice_leaders.gff3, Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs.genelets.RNASEQ.ws170.gff3 SRX014007
2589 RNA-seq - pathogen Smacescens 25dC 24hr exposure post-adulthood N2 genelets Waterston Waterston RNA-seq RNA profiling EnvironmentalTreatment=food:S. marcescens (Db11) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 1/14/10 2/2/10 released Adult_S_macescens_Db10_exposed_1_24hrs.wormbase_transcripts.ws170.gff3, Adult_S_macescens_Db10_exposed_1_24hrs.genelets.RNASEQ.ws170.gff3, Adult_S_macescens_Db10_exposed_1_24hrs.confirmed_introns_all.gff3, Adult_S_macescens_Db10_exposed_1_24hrs.confirmed_polya.gff3, Adult_S_macescens_Db10_exposed_1_24hrs.confirmed_splice_leaders.gff3 SRX014008
2590 RNA-seq - soma-only mid-L4 25dC 36hrs post-L1 JK1107 genelets Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans JK1107 whole organism larva: L4 larva 1/14/10 2/2/10 released L4_soma_JK1107_no_DNaseI.wormbase_transcripts.ws170.gff3, L4_soma_JK1107_no_DNaseI.confirmed_introns_all.gff3, L4_soma_JK1107_no_DNaseI.confirmed_polya.gff3, L4_soma_JK1107_no_DNaseI.genelets.RNASEQ.ws170.gff3, L4_soma_JK1107_no_DNaseI.confirmed_splice_leaders.gff3 SRX014010
2591 RNA-Seq - pathogen Smacescens control OP50 25dC 24hr exposure post-adulthood N2 genelets Waterston Waterston RNA-seq RNA profiling EnvironmentalTreatment=food:E. coli (OP50) Caenorhabditis elegans N2 whole organism larva: newly molted young adult hermaphrodite 1/14/10 2/2/10 released Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs.genelets.RNASEQ.ws170.gff3, Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs.confirmed_introns_all.gff3, Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs.confirmed_polya.gff3, Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs.confirmed_splice_leaders.gff3, Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs.wormbase_transcripts.ws170.gff3 SRX014009
2592 Cell Line RNA-seq CME_W1_CI.8+ multimapped reads Celniker Graveley RNA-seq RNA profiling Drosophila melanogaster CME W1 Cl.8+ 1/14/10 2/13/10 released SRX003834, SRX003835
2593 Cell Line RNA-seq Kc167 multimapped reads Celniker Graveley RNA-seq RNA profiling Drosophila melanogaster Kc167 1/15/10 2/13/10 released SRX003836, SRX003837
2594 Cell Line RNA-seq ML-DmBG3-c2 multimapped reads Celniker Graveley RNA-seq RNA profiling Drosophila melanogaster ML-DmBG3-c2 1/15/10 2/13/10 released SRX003838, SRX003839
2596 deprecated by 3160 Snyder_EOR-1_POLII_L3 Snyder Snyder ChIP-seq chromatin Target=eor-1;AbName=RNA Polymerase II Caenorhabditis elegans OP81 whole organism larva: L3 larva 1/20/10 2/18/10 replaced Snyder_EOR-1_POLII_L3_combined_peaks.GFF3
2597 Snyder_HLH-8_POLII_L3 Snyder Snyder ChIP-seq chromatin Target=hlh-8;AbName=RNA Polymerase II Caenorhabditis elegans OP74 whole organism larva: L3 larva 1/20/10 2/17/10 released Snyder_HLH-8_POLII_L3_combined_peaks.GFF3
2598 Snyder_PHA4_GFP_lemb Snyder Snyder ChIP-seq chromatin Target=pha-4;AbName=eGFP Caenorhabditis elegans OP37 whole organism embryo: elongating embryo, gastrulating embryo, late cleavage stage embryo 1/20/10 2/17/10 released Snyder_PHA4_GFP_lemb_combined_peaks.GFF3
2599 deprecated by 3161 Snyder_PHA4_GFP_YA Snyder Snyder ChIP-seq chromatin Target=pha-4;AbName=eGFP Caenorhabditis elegans OP37 whole organism larva: newly molted young adult hermaphrodite 1/20/10 2/17/10 replaced Snyder_PHA4_GFP_YA_combined_peaks.GFF3
2600 Snyder_MEP-1_GFP_emb Snyder Snyder ChIP-seq chromatin Target=mep-1;AbName=eGFP Caenorhabditis elegans WBGene00003218 whole organism embryo: embryo 1/20/10 2/17/10 released Snyder_MEP-1_GFP_emb_combined_peaks.GFF3
2601 Snyder_MDL-1_GFP_L1 Snyder Snyder ChIP-seq chromatin Target=mdl-1;AbName=eGFP Caenorhabditis elegans OP106 whole organism larva: L1 larva 1/20/10 2/17/10 released Snyder_MDL-1_GFP_L1_combined_peaks.GFF3
2602 ISO1_8-16_mod_mdg4 White White ChIP-chip chromatin Target=mod(mdg4);AbName=KW4-mod(mdg4)-D2;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 9-13 1/20/10 2/18/10 released ISO1_8-16_mod_mdg4_COMBINED_DCC_merged.bed.gff
2603 R13_1-6_eve-GFP White White ChIP-chip chromatin Target=eGFP;AbName=odg-GFP;Array=160bp;ArrayPlatform=Agilent Drosophila melanogaster R13-eve-YFP whole organism embryo: embryonic stage 3-6 1/20/10 2/18/10 released R13_1-6-GFP_BC_DCC_merged.bed.gff
2604 Histone_H3K36me1_N2_EEMB_(AB9048_H3K36ME1206009_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K36Me1;AbName=H3K36Me1;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 1/21/10 2/14/10 released , GSE22744, GSM562772, GSM562773
2605 Lai_OvarySomaticSheet_smallRNA_4replicates Lai Lai RNA-seq RNA profiling Drosophila melanogaster Ovary Somatic Sheet 1/21/10 2/3/10 released GSM385744
2606 Lai_Kc167_2rep Lai Lai RNA-seq RNA profiling Drosophila melanogaster Kc167 1/22/10 2/3/10 released GSM399100,GSM399101
2607 superseded by 2980 D. Pseudoobscura female heads mRNA-seq Celniker Oliver RNA-seq RNA profiling Drosophila pseudoobscura pseudoobscura D. pseudoobscura 14011-0121.94 adult head adult: adult stage 1/22/10 2/13/10 replaced GSM499404
2608 Lai_S2R+_2rep Lai Lai RNA-seq RNA profiling Drosophila melanogaster S2R+ 1/22/10 2/3/10 released GSM343832
2610 Snyder_LIN-15B_GFP_L3 Snyder Snyder ChIP-seq chromatin Target=lin-15B;AbName=eGFP Caenorhabditis elegans OP184 whole organism larva: L3 larva 1/22/10 2/17/10 released Snyder_LIN-15B_GFP_L3_combined_peaks.GFF3
2612 Snyder_BLMP-1_GFP_L1 Snyder Snyder ChIP-seq chromatin Target=blmp-1;AbName=eGFP Caenorhabditis elegans OP109 whole organism larva: L1 larva 1/22/10 2/17/10 released Snyder_BLMP-1_GFP_L1_combined_peaks.GFF3
2613 Snyder_LIN-13_GFP_emb Snyder Snyder ChIP-seq chromatin Target=lin-13;AbName=eGFP Caenorhabditis elegans OP51 whole organism embryo: embryo 1/22/10 2/17/10 released Snyder_LIN-13_GFP_emb_combined_peaks.GFF3
2614 Snyder_ELT-3_GFP_L1 Snyder Snyder ChIP-seq chromatin Target=elt-3;AbName=eGFP Caenorhabditis elegans OP75 whole organism larva: L1 larva 1/22/10 2/17/10 released Snyder_ELT-3_GFP_L1_combined_peaks.GFF3
2616 deprecated by 3162 Snyder_EGL5_POLII_L3 Snyder Snyder ChIP-seq chromatin Target=egl-5;AbName=RNA Polymerase II Caenorhabditis elegans OP54 whole organism larva: L3 larva 1/22/10 2/17/10 replaced Snyder_EGL-5_POLII_L3_combined_peaks.GFF3
2617 Snyder_NHR-105_GFP_L3 Snyder Snyder ChIP-seq chromatin Target=nhr-105;AbName=eGFP Caenorhabditis elegans OP199 whole organism larva: L3 larva 1/22/10 2/18/10 released Snyder_NHR-105_GFP_L3_combined_peaks.GFF3
2620 Snyder_CEH-30_GFP_lemb Snyder Snyder ChIP-seq chromatin Target=ceh-30;AbName=eGFP Caenorhabditis elegans OP120 whole organism embryo: elongating embryo, gastrulating embryo, late cleavage stage embryo 1/22/10 2/18/10 released Snyder_CEH-30_GFP_lemb_combined_peaks.GFF3
2621 Snyder_EGL-27_GFP_L1 Snyder Snyder ChIP-seq chromatin Target=egl-27;AbName=eGFP Caenorhabditis elegans OP177 whole organism larva: L1 larva 1/22/10 2/18/10 released Snyder_EGL-27_GFP_L1_combined_peaks.GFF3
2622 Snyder_SKN-1_GFP_L1 Snyder Snyder ChIP-seq chromatin Target=skn-1;AbName=eGFP Caenorhabditis elegans WBGene00004804 whole organism larva: L1 larva 1/22/10 2/18/10 released Snyder_SKN-1_GFP_L1_combined_peaks.GFF3
2623 Snyder_PQM-1_GFP_L3 Snyder Snyder ChIP-seq chromatin Target=pqm-1;AbName=eGFP Caenorhabditis elegans OP201 whole organism larva: L3 larva 1/22/10 2/18/10 released Snyder_PQM-1_GFP_L3_combined_peaks.GFF3
2625 A-Female_7T_ChIP-seq White White ChIP-seq chromatin Target=cad;AbName=odg-GFP Drosophila melanogaster 7T-CAD whole organism adult: adult stage 1/25/10 2/15/10 released A-Female_7T_peaks.bed.gff3 GSM499631
2626 E0-4h_7T_ChIP-seq White White ChIP-seq chromatin Target=cad;AbName=odg-GFP Drosophila melanogaster 7T-CAD whole organism embryo: embryonic stage 1-9 1/25/10 2/18/10 released E0-4h_7T_peaks.bed.gff3 GSM499644
2627 E0-12_HDAC-492_ChIP-seq White White ChIP-seq chromatin Target=HDAC4;AbName=HDAC4a-492 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-492_peaks.bed.gff3 GSM499633
2628 E0-12_HDAC-493_ChIP-seq White White ChIP-seq chromatin Target=HDAC4;AbName=HDAC4a-493 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-493_peaks.bed.gff3 GSM499635
2629 E0-12_HDAC-494_ChIP-seq White White ChIP-seq chromatin Target=HdacX;AbName=HDAC11-494 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-494_peaks.bed.gff3 GSM499636
2630 E0-12_HDAC-495_ChIP-seq White White ChIP-seq chromatin Target=HdacX;AbName=HDAC11-495 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-495_peaks.bed.gff3 GSM499637
2631 E0-12_HDAC-496_ChIP-seq White White ChIP-seq chromatin Target=HDAC6;AbName=HDAC6-496 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-496_peaks.bed.gff3 GSM499638
2632 E0-12_HDAC-497_ChIP-seq White White ChIP-seq chromatin Target=HDAC6;AbName=HDAC6-497 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-497_peaks.bed.gff3 GSM499639
2633 E0-12_HDAC-498_ChIP-seq White White ChIP-seq chromatin Target=Hdac3;AbName=HDAC3-498 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-498_peaks.bed.gff3 GSM499640
2634 E0-12_HDAC-499_ChIP-seq White White ChIP-seq chromatin Target=Hdac3;AbName=HDAC3-499 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-499_peaks.bed.gff3 GSM499641
2635 E0-12_HDAC-500_ChIP-seq White White ChIP-seq chromatin Target=Rpd3;AbName=HDAC1-500 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-500_peaks.bed.gff3 GSM499642
2636 E0-12_HDAC-501_ChIP-seq White White ChIP-seq chromatin Target=Rpd3;AbName=HDAC1-501 Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage 1-15 1/25/10 2/18/10 released E0-12_HDAC-501_peaks.bed.gff3 GSM499643
2637 E4-8h_7T_ChIP-seq White White ChIP-seq chromatin Target=cad;AbName=odg-GFP Drosophila melanogaster 7T-CAD whole organism embryo: embryonic stage 9-12 1/25/10 2/18/10 released E4-8h_7T_peaks.bed.gff3 GSM499647
2638 S2_CTCF200_ChIP-seq White White ChIP-seq chromatin Target=CTCF;AbName=CTCF-N Drosophila melanogaster S2-DRSC 1/25/10 2/18/10 released S2_CTCF200_peaks.bed.gff3 GSM499649
2639 S2_CTCF500_ChIP-seq White White ChIP-seq chromatin Target=CTCF;AbName=CTCF-N Drosophila melanogaster S2-DRSC 1/25/10 2/18/10 released S2_CTCF500_peaks.bed.gff3 GSM499651
2640 W3L_EcRGFP_ChIP_seq White White ChIP-seq chromatin Target=eGFP;AbName=odg-GFP Drosophila melanogaster EcR-GFP whole organism larva: third instar larval stage 1/25/10 2/18/10 released W3L_EcRGFP_density.bed.gff3 GSM499661
2641 WPP_EcR_GFP_ChIP-seq White White ChIP-seq chromatin Target=eGFP;AbName=odg-GFP Drosophila melanogaster EcR-GFP whole organism larva: prepupal stage P1 1/25/10 2/18/10 released WPP_density.bed.gff3 GSM499657
2642 WPP30-33_EcR_GFP_ChIP-seq White White ChIP-seq chromatin Target=eGFP;AbName=odg-GFP Drosophila melanogaster EcR-GFP whole organism larva: prepupal stage P3 1/25/10 2/18/10 released WPP30-33_density.bed.gff3 GSM499653
2644 RNAseq - 0911 aggregate fourteen stages - sequences, alignments, genelets Waterston Waterston 1/26/10 reviewing
2645 deprecated by 3199 Histone_H3K4me2_N2_EEMB_(MP07030_H3K4ME2DAM1570816_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K4Me2;AbName=H3K4Me2;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 1/26/10 2/18/10 replaced , GSE22745, GSM562774
2646 Histone_H3K9me1_N2_EEMB_(AB9045_H3K9ME1291918_N2_EEMB) Lieb Strome ChIP-chip chromatin modification Target=H3K9Me1;AbName=H3K9Me1;Array=40bp;ArrayPlatform=Nimblegen Caenorhabditis elegans N2 whole organism embryo: blastula embryo, gastrulating embryo 1/26/10 2/18/10 released , GSE22746, GSM562775, GSM562776
2647 RNAseq - 0911 aggregate fourteen stages - non-redundant exons Waterston Waterston RNA-seq RNA profiling Caenorhabditis elegans 1/26/10 2/19/10 released mid-L1_20dC_4hrs_post-L1.integrated_transcripts.ws170.gff3, embryo_him-8_20dC_post-L1.integrated_transcripts.ws170.gff3, mid-L4_20dC_36hrs_post-L1.integrated_transcripts.ws170.gff3, dauer_daf-2_25dC_91hrs_post-L1.integrated_transcripts.ws170.gff3, dauer_entry_daf-2_25dC_48hrs_post-L1.integrated_transcripts.ws170.gff3, Young_Adult_25dC_46hrs_post-L1.integrated_transcripts.ws170.gff3, early_embryo.integrated_transcripts.ws170.gff3, male_mid-L4_25dC_30hrs_post-L1.integrated_transcripts.ws170.gff3, late_embryo_20dC_4.5hrs_post-early_embryo.integrated_transcripts.ws170.gff3, Adult_spe-9_23dC_8days_post-L4_molt.integrated_transcripts.ws170.gff3, dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1.integrated_transcripts.ws170.gff3, C_elegans_nrexon_v2.0.ws190.gff3, mid-L2_20dC_14hrs_post-L1.integrated_transcripts.ws170.gff3, mid-L3_20dC_25hrs_post-L1.integrated_transcripts.ws170.gff3, Aggregate_0911.integrated_transcripts.v3.ws170.gff3, lin-35(n745)_mid-L1_25dC_4.0hrs_post-L1.integrated_transcripts.ws170.gff3
2648 Chro(Chriz)BR.14-16_hr_OR_embryo Karpen Elgin ChIP-chip chromatin Target=Chro;AbName=Chro(Chriz)BR;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 16 1/26/10 2/18/10 released repset.4161801.smoothedM.clusters.gff3 GSE23464, GSM575391, GSM575391, GSM575392, GSM575393, GSM575394, GSM575395, GSM575396, GSM575397, GSM575398
2650 Ez.BG3 Karpen Pirrotta ChIP-chip chromatin Target=E(z);AbName=Ez;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 1/27/10 2/16/10 released repset.4621687.smoothedM.clusters.gff3 GSE23465, GSM575399, GSM575399, GSM575400, GSM575401, GSM575402
2651 GAF.BG3 Karpen Pirrotta ChIP-chip chromatin Target=Trl;AbName=GAF;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 1/27/10 2/16/10 released repset.9273879.smoothedM.clusters.gff3 GSE23466, GSM575403, GSM575403, GSM575404, GSM575405, GSM575406
2652 H3K18Ac_(new_lot).2-4_hr_OR_embryo Karpen Elgin ChIP-chip chromatin modification Target=H3K18Ac;AbName=H3K18Ac;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 1/27/10 2/18/10 released repset.9273880.smoothedM.clusters.gff3 GSE23467, GSM575407, GSM575407, GSM575408, GSM575409, GSM575410
2653 H3K4me1.BG3 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K4Me1;AbName=H3K4Me1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 1/27/10 2/16/10 released repset.5014166.smoothedM.clusters.gff3 GSE23468, GSM575411, GSM575411, GSM575412, GSM575413, GSM575414
2654 H3K4me2-Millipore.BG3 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K4Me2;AbName=H3K4Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 1/27/10 2/16/10 released repset.8290389.smoothedM.clusters.gff3 GSE23469, GSM575415, GSM575415, GSM575416, GSM575417, GSM575418
2655 H3K4me2-Millipore.S2 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K4Me2;AbName=H3K4Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 1/27/10 2/16/10 released repset.8290388.smoothedM.clusters.gff3 GSE23470, GSM575419, GSM575419, GSM575420, GSM575421, GSM575422
2656 H3K4me2.14-16_hr_OR_embryo Karpen Elgin ChIP-chip chromatin modification Target=H3K4Me2;AbName=H3K4Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 16 1/27/10 2/18/10 released repset.9273384.smoothedM.clusters.gff3 GSE23471, GSM575423, GSM575423, GSM575424, GSM575425, GSM575426
2657 H3K4me2.D.mel_3rd_Instar_Larvae_Nuclei Karpen Elgin ChIP-chip chromatin modification Target=H3K4Me2;AbName=H3K4Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism larva: larval stage, third instar larval stage 1/27/10 2/18/10 released repset.4161958.smoothedM.clusters.gff3 GSE23472, GSM575427, GSM575427, GSM575428, GSM575429, GSM575430, GSM575431, GSM575432
2658 H3K79me1.S2 Karpen Pirrotta ChIP-chip chromatin modification Target=H3K79Me1;AbName=H3K79Me1;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 1/27/10 2/16/10 released repset.4161604.smoothedM.clusters.gff3 GSE23473, GSM575433, GSM575433, GSM575434, GSM575435, GSM575436
2659 H3K9acS10P_(new_lot).BG3 Karpen Elgin ChIP-chip chromatin modification Target=H3K9AcS10P;AbName=H3K9AcS10P;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 1/27/10 2/16/10 released repset.9273877.smoothedM.clusters.gff3 GSE23474, GSM575437, GSM575437, GSM575438, GSM575439, GSM575440, GSM575441
2660 H3K9acS10P_(new_lot).S2 Karpen Elgin ChIP-chip chromatin modification Target=H3K9AcS10P;AbName=H3K9AcS10P;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 1/27/10 2/16/10 released repset.7766214.smoothedM.clusters.gff3 GSE23475, GSM575442, GSM575442, GSM575443, GSM575444, GSM575445, GSM575446, GSM575447
2661 H3K9me2-Ab2_(new_lot).14-16_hr_OR_embryo Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 16 1/27/10 2/18/10 released repset.8061133.smoothedM.clusters.gff3 GSE23476, GSM575448, GSM575448, GSM575449, GSM575450, GSM575451, GSM575452, GSM575453
2662 H3K9me2-Ab2_(new_lot).2-4_hr_OR_embryo Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me2;AbName=H3K9Me2;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 1/27/10 2/18/10 released repset.4162511.smoothedM.clusters.gff3 GSE23477, GSM575454, GSM575454, GSM575455, GSM575456, GSM575457, GSM575458, GSM575459, GSM575460, GSM575461
2663 H3K9me3_(new_lot).14-16_hr_OR_embryo Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: egg stage, embryonic stage, fertilized egg stage, late embryonic stage, unfertilized egg stage, embryonic stage 16 1/27/10 2/18/10 released repset.5013683.smoothedM.clusters.gff3 GSE23478, GSM575462, GSM575462, GSM575463, GSM575464, GSM575465, GSM575466, GSM575467, GSM575468
2664 H3K9me3_(new_lot).OR_Head_Nuclei Karpen Elgin ChIP-chip chromatin modification Target=H3K9Me3;AbName=H3K9Me3;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE adult head adult: adult stage 1/27/10 2/17/10 released repset.5013684.smoothedM.clusters.gff3 GSE23479, GSM575469, GSM575469, GSM575470, GSM575471, GSM575472
2665 HP1_wa191.2-4_hr_OR_embryo Karpen Elgin ChIP-chip chromatin Target=Su(var)205;AbName=HP1 wa191;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Oregon-R-modENCODE whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 1/27/10 2/18/10 released repset.9274441.smoothedM.clusters.gff3 GSE23480, GSM575473, GSM575473, GSM575474, GSM575475, GSM575476
2666 HP1_wa191.BG3 Karpen Elgin ChIP-chip chromatin Target=Su(var)205;AbName=HP1 wa191;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 1/27/10 2/17/10 released repset.4620428.smoothedM.clusters.gff3 GSE23481, GSM575477, GSM575477, GSM575478, GSM575479, GSM575480, GSM575481, GSM575482
2667 HP1_wa191.Clone_8 Karpen Elgin ChIP-chip chromatin Target=Su(var)205;AbName=HP1 wa191;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 1/27/10 2/17/10 released repset.8061130.smoothedM.clusters.gff3 GSE23482, GSM575483, GSM575483, GSM575484, GSM575485, GSM575486, GSM575487
2668 HP1a_wa184.S2 Karpen Elgin ChIP-chip chromatin Target=Su(var)205;AbName=HP1a wa184;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 1/27/10 2/17/10 released repset.4621227.smoothedM.clusters.gff3 GSE23483, GSM575488, GSM575488, GSM575489, GSM575490, GSM575491
2669 HP1c_(MO 462).Clone_8 Karpen Elgin ChIP-chip chromatin Target=HP1c;AbName=HP1c (MO 462);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster CME W1 Cl.8+ 1/27/10 2/17/10 released repset.9273386.smoothedM.clusters.gff3 GSE23484, GSM575492, GSM575492, GSM575493, GSM575494, GSM575495
2670 HP1c_(MO_462).Kc Karpen Elgin ChIP-chip chromatin Target=HP1c;AbName=HP1c (MO 462);Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster Kc167 1/27/10 2/17/10 released repset.9273382.smoothedM.clusters.gff3 GSE23485, GSM575496, GSM575496, GSM575497, GSM575498, GSM575499
2671 Su(var)3-7-Q3448.BG3 Karpen Elgin ChIP-chip chromatin Target=Su(var)3-7;AbName=Su(var)3-7-Q3448;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster ML-DmBG3-c2 1/27/10 2/17/10 released repset.5014218.smoothedM.clusters.gff3 GSE23486, GSM575500, GSM575500, GSM575501, GSM575502, GSM575503
2672 Su(var)3-7-Q3448.S2 Karpen Elgin ChIP-chip chromatin Target=Su(var)3-7;AbName=Su(var)3-7-Q3448;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 1/27/10 2/17/10 released repset.5013682.smoothedM.clusters.gff3 GSE23487, GSM575504, GSM575504, GSM575505, GSM575506, GSM575507
2673 Su(var)3-9.S2 Karpen Elgin ChIP-chip chromatin Target=Su(var)3-9;AbName=Su(var)3-9;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 1/27/10 2/17/10 released repset.4620686.smoothedM.clusters.gff3 GSE23488, GSM575508, GSM575508, GSM575509, GSM575510, GSM575511, GSM575512, GSM575513
2674 mod2.2-VC.S2 Karpen Pirrotta ChIP-chip chromatin Target=mod(mdg4);AbName=mod2.2-VC;Array=38bp;ArrayPlatform=Affymetrix Drosophila melanogaster S2-DRSC 1/27/10 2/17/10 released repset.4621690.smoothedM.clusters.gff3 GSE23489, GSM575514, GSM575514, GSM575515, GSM575516, GSM575517
2675 MB8 gene models Celniker Brent Computational annotation gene model Drosophila melanogaster 1/27/10 9/2/10 released BS107_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS111_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS113_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS129_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS133_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS136_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS137_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS140_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS143_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS150_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS153_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS156_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS159_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS162_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS165_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS196_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS200_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS203_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS40_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS43_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS46_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS49_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS54_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS55_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS58_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS62_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS66_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS67_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS71_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, BS73_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3, MB8/models/MB08.gff3, MB8/transcript_clusters/dm3_run12.gff3
2676 D.melanogaster 0-2hr embryo, SOLiD total RNA-seq Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster, Caenorhabditis elegans y; cn bw sp whole organism embryo: embryonic stage, pre-blastoderm stage, embryonic stage 1-2 1/27/10 2/13/10 released SRX015641
2677 D.melanogaster 2-4hr embryo, SOLiD total RNA-seq Celniker Celniker RNA-seq RNA profiling Drosophila melanogaster, Caenorhabditis elegans y; cn bw sp whole organism embryo: early extended germ band stage, embryonic stage, embryonic stage 5-9 1/27/10 2/13/10 released SRX015642