From 7cf797ccdc342c9db903e07642ea5427fbc3f1ab Mon Sep 17 00:00:00 2001 From: RoanKanninga Date: Fri, 18 Oct 2019 15:01:30 +0200 Subject: [PATCH] fixing position in samplesheet --- bin/ConcordanceMakeSamplesheet.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/ConcordanceMakeSamplesheet.sh b/bin/ConcordanceMakeSamplesheet.sh index 27ca9f36..412fe228 100755 --- a/bin/ConcordanceMakeSamplesheet.sh +++ b/bin/ConcordanceMakeSamplesheet.sh @@ -234,7 +234,7 @@ do log4Bash 'DEBUG' "${LINENO}" "${FUNCNAME:-main}" '0' "the concordance between ${arrayInfoList} ${ngsInfoList} is being calculated" continue else - echo -e "data1Id\tdata2Id\tlocation1\tlocation2\n${arrayId}\t${ngsVcfId}\t${HOSTNAME_PRM}:${ngsVcfDirPRM}/${ngsVcfId}.final.vcf.gz\t${HOSTNAME_PRM}:${arrayVcfDirPRM}/${arrayId}.FINAL.vcf" > "${concordanceDir}/samplesheets/${arrayInfoList}_${ngsInfoList}.sampleId.txt" + echo -e "data1Id\tdata2Id\tlocation1\tlocation2\n${arrayId}\t${ngsVcfId}\t${HOSTNAME_PRM}:${arrayVcfDirPRM}/${arrayId}.FINAL.vcf\t${HOSTNAME_PRM}:${ngsVcfDirPRM}/${ngsVcfId}.final.vcf.gz" > "${concordanceDir}/samplesheets/${arrayInfoList}_${ngsInfoList}.sampleId.txt" fi done