From ed46c00e5b044b34a55ffd71634ddf47138e5dc6 Mon Sep 17 00:00:00 2001 From: gerbenvandervries Date: Thu, 12 Jan 2017 14:51:33 +0100 Subject: [PATCH] v --- protocols/CreateExternSamplesProjects.sh | 4 ++-- test/autotest_generate_template.sh | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/protocols/CreateExternSamplesProjects.sh b/protocols/CreateExternSamplesProjects.sh index 6fe0d80..f6c59a8 100755 --- a/protocols/CreateExternSamplesProjects.sh +++ b/protocols/CreateExternSamplesProjects.sh @@ -37,7 +37,7 @@ umask 0007 module load Molgenis-Compute/${computeVersion} -module load ngs-utils/16.09.1 +module load ${NGSUtilsVersion} module list # @@ -97,7 +97,7 @@ cd $ROCKETPOINT echo "before splitting" echo `pwd` -#module load ${NGSRNAVersion} +module load ${NGSRNAVersion} # # TODO: array for each sample: diff --git a/test/autotest_generate_template.sh b/test/autotest_generate_template.sh index 3c391a4..f02dbd8 100755 --- a/test/autotest_generate_template.sh +++ b/test/autotest_generate_template.sh @@ -60,7 +60,7 @@ sh ${EBROOTMOLGENISMINCOMPUTE}/molgenis_compute.sh \ -o "workflowpath=${WORKFLOW};outputdir=scripts/jobs;\ groupname=${GROUP};\ mainParameters=${WORKDIR}/generatedscripts/${PROJECT}/parameters.csv;\ -ngsversion='NGS_RNA/3.2.4-Molgenis-Compute-v16.05.1-Java-1.8.0_45';\ +ngsversion='NGS_RNA/3.2.4';\ worksheet=${WORKDIR}/generatedscripts/${PROJECT}/${PROJECT}.csv;\ parameters_build=${WORKDIR}/generatedscripts/${PROJECT}/parameters.${BUILD}.csv;\ parameters_species=${WORKDIR}/generatedscripts/${PROJECT}/parameters.${SPECIES}.csv;\