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setup.py
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setup.py
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#!/usr/bin/env python3
from setuptools import setup, find_namespace_packages
from src.molgenis.capice_resources import __version__
with open('README.md', 'r', encoding='utf-8') as fh:
long_description = fh.read()
setup(
name='capice-resources',
version=__version__,
packages=find_namespace_packages('src', exclude=['tests']),
package_dir={"": "src"},
url='https://github.com/molgenis/capice-resources/',
license='LGPL-3.0',
author='Molgenis',
author_email='[email protected]',
description='Resource files for CAPICE to train new CAPICE models',
long_description=long_description,
classifiers=[
'Development Status :: 5 - Production/Stable',
'License :: LGPL-3.0',
'Programming Language :: Python :: 3.10'
],
include_package_data=True,
package_data={"molgenis": ['.vcf']}, # Dirty fix, improve when switching to pyproject.toml (including MANIFEST.in)
python_requires='>=3.10',
install_requires=[
'pandas==1.5.3',
'numpy==1.24.1',
'matplotlib==3.7.1',
'scikit-learn==1.2.1',
'graphviz==0.19.1',
'seaborn==0.12.1'
],
extras_require={
'test': [
'pytest', # pytest
'coverage', # coverage run -m pytest --junitxml=results.xml && coverage html
'mypy', # mypy --ignore-missing-imports src/
'flake8', # flake8 src/ tests/
'flake8-import-order'
]
},
entry_points={
'console_scripts': [
'process-vep = molgenis.capice_resources.process_vep.__main__:main',
'compare-model-features = molgenis.capice_resources.compare_model_features.__main__:main',
'compare-model-performance = molgenis.capice_resources.compare_model_performance.__main__:main',
'threshold-calculator = molgenis.capice_resources.threshold_calculator.__main__:main',
'train-data-creator = molgenis.capice_resources.train_data_creator.__main__:main',
'balance-dataset = molgenis.capice_resources.balance_dataset.__main__:main'
]
}
)