diff --git a/.circleci/config.yml b/.circleci/config.yml
index 120b86e8f..69129619f 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -68,7 +68,7 @@ jobs:
       - run:
           name: build, test, push docker
           command: |
-            ./gradlew assemble test jacocoMergedReport sonarqube \
+            ./gradlew assemble test jacocoMergedReport sonar \
             -Dsonar.login=${SONAR_TOKEN} -Dsonar.organization=molgenis -Dsonar.host.url=https://sonarcloud.io \
             -Dorg.ajoberstar.grgit.auth.username=${GITHUB_TOKEN} -Dorg.ajoberstar.grgit.auth.password
             
diff --git a/build.gradle b/build.gradle
index 880130b1f..c5dcf6ecc 100644
--- a/build.gradle
+++ b/build.gradle
@@ -102,8 +102,12 @@ dockerPrepare.dependsOn test
 
 //merge test reports
 task jacocoMergedReport(type: JacocoReport) {
-    dependsOn project.getTasksByName("test", true)
+    dependsOn project.getTasksByName(":armadillo:test", true)
+    dependsOn project.getTasksByName(":r:test", true)
     dependsOn project.getTasksByName("jacocoTestReport", true)
+    dependsOn project.getTasksByName("jacocoTestReport", true)
+    dependsOn project.getTasksByName("bootStartScripts", true)
+    dependsOn project.getTasksByName("startScripts", true)
     additionalSourceDirs.setFrom files(subprojects.sourceSets.main.allSource.srcDirs)
     sourceDirectories.setFrom files(subprojects.sourceSets.main.allSource.srcDirs)
     classDirectories.setFrom files(subprojects.sourceSets.main.output)