build_wormqtl.xml

<project name="wormqtl">
	<!-- this name is used to name the war file -->
	<property name="app_name" value="wormqtl" />

	<!-- this holds all the settings for the generator -->
	<property name="app_properties" value="apps/wormqtl/org/molgenis/wormqtl/wormqtl.properties"/>
	
	<!-- this determines what handwritten modules should be loaded -->
	<path id="app.class.path">
		<pathelement location="apps/${app_name}" />
		<pathelement location="modules/_deprecated" />
		<pathelement location="apps/xqtl" />
		<pathelement location="modules/datamodel" />
		<pathelement location="modules/auth" />
		<pathelement location="modules/file" />
		<pathelement location="modules/import" />
		<pathelement location="modules/webserver" />
		<pathelement location="modules/settings" />
		<pathelement location="modules/pheno" />
		<pathelement location="modules/search" />
		<pathelement location="modules/matrix" />
		<pathelement location="modules/feedback" />
		<pathelement location="modules/xgap" />
		<pathelement location="modules/decorators/core" />
		<pathelement location="modules/decorators/auth" />
		<pathelement location="modules/decorators/pheno" />
		<pathelement location="modules/decorators/data" />
		<pathelement location="publicdata" />
	</path>

	<!-- import all tasks from build_common: clean, generate, compile, test, war, standalone-jar -->
	<import file="build_common.xml" />

	<!-- Delete HSQL database -->
	<target name="deletedb" description="Delete generated and build content">
		<mkdir dir="hsqldb" />
		<delete includeemptydirs="true">
			<fileset dir="hsqldb" includes="**/*" />
		</delete>
	</target>
	
	<!-- Remove anonymous permissions, essentially creating a private version -->
	<target name="makePrivate" description="Switch to private mode">
		<!--java maxmemory="4g" classname="org.molgenis.wormqtl.header.MakeWormQTLPrivate" fork="yes" failonerror="true">
			<arg value="${username}"/>
			<arg value="${password}"/>
			<classpath>
				<path refid="molgenis.classpath" />
				<path location="${build.molgenis.dir}" />
				<path location="${build.molgenis_apps.dir}" />
			</classpath>
		</java-->
		
		<copy file="apps/wormqtl/org/molgenis/wormqtl/header/HomePagePrivate.ftl" tofile="apps/wormqtl/org/molgenis/wormqtl/header/HomePage.ftl" overwrite="true"/>
	</target>
	
	<!-- Custom generate with a few extra tasks -->
	<target name="generate" depends="update-eclipse">
		<!-- clean generated folders -->
		<delete includeEmptyDirs="true" failonerror="false">
			<fileset dir="${output_src}" excludes=".gitignore"/>
			<fileset dir="${output_sql}" excludes=".gitignore"/>
			<fileset dir="${output_ccp}" excludes=".gitignore"/>
		</delete>
		
		<mkdir dir="${output_src}" />
		<mkdir dir="${output_sql}" />

		<!-- check if the molgenis project is where it is to be expected, in ../molgenis/ -->
		<condition property="dir.exists">
			<available file="${molgenis.dir}" type="dir" />
		</condition>

		<!-- check if molgenis is compiled into ${build.dir}, otherwise compile now -->
		<javac srcdir="${molgenis.dir}/src" destdir="${build.molgenis.dir}" nowarn="on" debug="true">
			<classpath refid="molgenis.classpath" />
		</javac>
		
		<!-- Copy WormQTL specific application footer, before copy of resources to build dir -->
		<copy file="apps/wormqtl/org/molgenis/wormqtl/header/WormApplicationView.ftl" tofile="../molgenis/src/org/molgenis/framework/ui/ApplicationView.ftl" overwrite="true"/>

		<!-- copy resources to build dir -->
		<copy todir="${build.molgenis.dir}">
			<fileset dir="${molgenis.dir}/src" includes="**/*.xml,**/*.properties,**/*.txt,**/*.ico,**/*.js,**/*.css,**/*.jpg,**/*.png,**/*.gif,**/*.ftl" />
		</copy>

		<!-- call the generator -->
		<java classname="org.molgenis.Molgenis" fork="yes" failonerror="true">
			<classpath refid="molgenis.classpath" />
			<classpath refid="app.class.path" />
			<arg value="${app_properties}" />
		</java>

		<!-- copy all ftl files from module folders-->
		<!-- concat all elements of app_path together separated by /**/*, -->
		<pathconvert property="app_path" refid="app.class.path" pathsep="/**/*," dirsep="/">
			<map from="${basedir}/" to="" />
		</pathconvert>
		<echo message="copying ftl files from ${app_path} to ${build.dir}" />
		<fail unless="app_path">app.class.path is not set</fail>
		<copy todir="${build.molgenis_apps.dir}">
			<!-- watch the trailing /**/*.ftl"-->
			<fileset dir="." includes="${app_path}/**/*" excludes="**/*.java" />
			<!-- cut the two leading directories from path -->
			<mapper type="regexp" from="^[-_a-zA-Z0-9]*[/\\][-_a-zA-Z0-9]*[/\\](.*)" to="\1" />
			<!--cutdirsmapper dirs="2"/-->
		</copy>

		<!-- copy sql and other resources from generate sql -->
		<copy todir="${build.molgenis_apps.dir}" verbose="true">
			<fileset dir="${output_sql}" includes="**/*.sql" erroronmissingdir="false"/>
			<fileset dir="${output_src}" includes="**/*.xml,**/*.properties,**/*.txt,**/*.ico" />
		</copy>

		<!-- copy source.R from generated to build -->
		<copy todir="${build.molgenis_apps.dir}" verbose="true">
			<fileset dir="${output_src}" includes="**/*.R" />
		</copy>
		
		<!-- Copy persistence.xml to rigth location if it's specified in *.properties as persistence_xml_location-->
		<antcall target="copy-persistence.xml" />
		
		<!-- Copy contact and about pages into place -->
		<copy file="WebContent/clusterdemo/wormqtl/wormqtl_contact.html" tofile="WebContent/wormqtl_contact.html" overwrite="true"/>
		<copy file="WebContent/clusterdemo/wormqtl/wormqtl_about.html" tofile="WebContent/wormqtl_about.html" overwrite="true"/>
		
		<!-- Copy walkthrough document to downloadable location -->
		<copy file="apps/wormqtl/org/molgenis/wormqtl/help/walkthrough.docx" tofile="WebContent/walkthrough.docx" overwrite="true"/>
		
		<!-- block webspiders -->
		<antcall target="add_robotstxt" />
	</target>
	
	<!-- Custom run with more memory -->
	<target name="run" description="Start the application">
		<java maxmemory="4g" classname="boot.RunStandalone" fork="yes" failonerror="true">
			<classpath>
				<path refid="molgenis.classpath" />
				<path location="${build.molgenis.dir}" />
				<path location="${build.molgenis_apps.dir}" />
			</classpath>
		</java>
	</target>
	
	<!--
	Custom runOn with more memory
	Usage: ant -f build_wormqtl.xml runOn -Dport=9000
	-->
	<target name="runOn" description="Start the application">
		<java maxmemory="4g" classname="boot.RunStandalone" fork="yes" failonerror="true">
			<arg value="${port}"/>
			<classpath>
				<path refid="molgenis.classpath" />
				<path location="${build.molgenis.dir}" />
				<path location="${build.molgenis_apps.dir}" />
			</classpath>
		</java>
	</target>
	
</project>