From ea1072ae3e3775846749a4f40f19ed4f9b0952eb Mon Sep 17 00:00:00 2001
From: RoanKanninga <roankanninga@gmail.com>
Date: Fri, 9 Dec 2016 10:12:31 +0100
Subject: [PATCH] update for unknown barcode

---
 CreateIlluminaSampleSheet_V2.pl | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/CreateIlluminaSampleSheet_V2.pl b/CreateIlluminaSampleSheet_V2.pl
index 5b74613..dd7709b 100755
--- a/CreateIlluminaSampleSheet_V2.pl
+++ b/CreateIlluminaSampleSheet_V2.pl
@@ -283,9 +283,10 @@ sub _ProcessExperiment {
 	# Check if barcodeType is one for which we know how to handle it. 
 	#
 	unless (exists($gaf_barcode_types{$barcodeType})) {
-		$logger->fatal('Detected unknown barcodeType ' . $barcodeType . ' for internalSampleID ' . $internalSampleID . '.');
-		$logger->fatal('Known barcodeType values are ' . join(' || ', keys(%gaf_barcode_types)) . '.');
-		exit(1);
+		$gaf_barcode_types{$barcodeType}{'IlluminaDemultiplexing'}=1;
+		#$logger->fatal('Detected unknown barcodeType ' . $barcodeType . ' for internalSampleID ' . $internalSampleID . '.');
+		#$logger->fatal('Known barcodeType values are ' . join(' || ', keys(%gaf_barcode_types)) . '.');
+		#exit(1);
 	}
 	
 	my @lanes = split(',',$lanes); # Separate multiple lane values like "1,2".