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EPIC: replace exomiser p2p pipeline with semsimian #19

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6 of 10 tasks
matentzn opened this issue Mar 14, 2024 · 0 comments
Open
6 of 10 tasks

EPIC: replace exomiser p2p pipeline with semsimian #19

matentzn opened this issue Mar 14, 2024 · 0 comments
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@souzadevinicius

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matentzn commented Mar 14, 2024 •
edited by souzadevinicius
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  • Create a make pipeline to generate hp-hp mappings based on phenio (with 0.4 Jaccard threshold)
  • Create a make pipeline to generate hp-mp mappings based on phenio (with 0.4 Jaccard threshold)
  • Create a make pipeline to generate hp-zp mappings based on phenio (with 0.4 Jaccard threshold)
  • Create the following experimental goals (4 configs, 12 distinct semantic similarity profiles, for phenio, use the "normal phenio" for now, not the "Monarch version" - note, this may change in the future - the reason for this is that Monarch PHENIO is changed in ways that I dont understand fully):
  • Run exomiser with the default config and all of these three configs
  • Generate your new rank-changed plot
  • Present at PhEval meeting
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