diff --git a/celloracle/data/__pycache__/__init__.cpython-36.pyc b/celloracle/data/__pycache__/__init__.cpython-36.pyc index ae36bfd..66ae27e 100644 Binary files a/celloracle/data/__pycache__/__init__.cpython-36.pyc and b/celloracle/data/__pycache__/__init__.cpython-36.pyc differ diff --git a/celloracle/trajectory/modified_VelocytoLoom_class.py b/celloracle/trajectory/modified_VelocytoLoom_class.py index 4668ca7..3c5e4ac 100644 --- a/celloracle/trajectory/modified_VelocytoLoom_class.py +++ b/celloracle/trajectory/modified_VelocytoLoom_class.py @@ -25,7 +25,7 @@ from .neighbors import (BalancedKNN, connectivity_to_weights, convolve_by_sparse_weights, knn_distance_matrix) -from velocyto.serialization import dump_hdf5, load_hdf5 +#from velocyto.serialization import dump_hdf5, load_hdf5 #from tqdm.notebook import tqdm diff --git a/celloracle/version.py b/celloracle/version.py index 6ab73be..b1b4545 100644 --- a/celloracle/version.py +++ b/celloracle/version.py @@ -1,4 +1,4 @@ # -*- coding: utf-8 -*- -__version__ = '0.7.5' +__version__ = '0.8.0' diff --git a/requirements.txt b/requirements.txt index 15e0e6a..9d13f16 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,7 @@ numpy scipy cython -numba==0.50.1 +numba>=0.50.1 matplotlib seaborn scikit-learn diff --git a/setup.py b/setup.py index c776293..97ca5d1 100755 --- a/setup.py +++ b/setup.py @@ -2,6 +2,7 @@ from setuptools import setup, find_packages + with open("requirements.txt") as f: required = f.read().splitlines() @@ -16,10 +17,10 @@ """ - +# Start install process setup( name='celloracle', - version="0.7.5", + version="0.8.0", description='GRN analysis with single cell data', long_description=readme, python_requires='>=3.6', @@ -60,5 +61,4 @@ "celloracle.data", "celloracle.go_analysis", "celloracle.oracle_utility", "celloracle.motif_analysis", "celloracle.network_analysis", "celloracle.utility", "celloracle.applications", "celloracle.visualizations"], entry_points={'console_scripts':['seuratToAnndata = celloracle.data_conversion.process_seurat_object:main']} - )