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ONT cDNA bam strand fix script #28

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skudashev opened this issue Dec 18, 2024 · 0 comments
Open

ONT cDNA bam strand fix script #28

skudashev opened this issue Dec 18, 2024 · 0 comments

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@skudashev
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Hello,

I have checked your paper and you mention that you use your bam_strand.py script to reserve reads in the complementary strand based on ‘ts‘ flag to obtain reads in the correct strand. Could you please explain how that helps with the way LAPA does its calculation?

Best wishes,
Sofia
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@skudashev