v0.4.3

Change Log

Bug Fix

• Fixed bug due to matplotlib v3.8.0 changes (#22)
• Fixed savefig() to suppress memory leak during multiple plots

v0.4.2

Change Log

Improvement

• Added resource warning message for streamlit cloud deployment

Bug Fix

• Fixed gui run error when upload filename contains space char
• Fixed mmseqs run error when protein_id contains | char
• Fixed a bug that gff.get_seqid2size() got incorrect multi-contig size

v0.4.1...v0.4.2

v0.4.1

Change Log

Improvement (GUI)

• Added genome comparison result download functionality
• Improved text contents & widget layout
• Adjusted range label padding size

Bug Fix

• Fixed feature coloring bug when facecolor tag is set

v0.4.0...v0.4.1

v0.4.0

Change Log

New Functionality

• Added GUI (Web browser) functionality using streamlit (Demo Page)

Improvement

• Improved html viewer tooltip display content
• Changed linter flake8 to ruff

v0.3.2...v0.4.0

v0.3.2

Change Log

Minor Change

• Added reverse complement option to CLI
• Added target_strand, pseudogene arguments to gff.extract_features() method
• Drop python3.7 support

v0.3.1...v0.3.2

v0.3.1

Change Log

Minor Change

• Added pseudogene option to add_genbank_features() method
• Added --pseudo, --pseudo_color option to pgv-mummer CLI (#7)

v0.3.0...v0.3.1

v0.3.0

Change Log

New Functionality

• Added GFF parser class (parser/gff.py)
• Added GFF features plot method (add_gff_features())

Minor Change

• Added facecolor_handle_func option to add_genbank_features() method
• Added ymargin option to set_sublabel() method
• Improved HTML viewer tooltip display
• Fixed duplicate colorbar display issue for same colors
• Added colorbar width, height control option to CLI (pgv-mummer, pgv-mmseqs)

v0.2.3

Change Log

New Functionality

• Added interactive HTML viewer output functionality (Demo Page)
• Added new CLI workflow pgv-simpleplot for simple genome visualization

v0.2.2

Change Log

Minor Change

• Added set_sublabel() method
• Set appropriate matplotlib rc(runtime configuration) params to adjust figure appearence
• Set appropriate GridSpec left-right-bottom-top params to adjust figure appearence
• Used typing.Literal to restrict allowed argument values

v0.2.1

Change Log

Minor Change

• Added start_pos option to add_feature_track() method
• Added position option to add_subtrack() method
• Changed GenomeViz default plot_size_thr parameter 0.0005 to 0
• Changed add_link() method to occur error if start-end value is out of track range
• Removed unnecessary maptype option of pgv-mummer cli
• Fixed deprecated typing module type hints style (Use built-in types)