From 56f35371030f045228ff012c461ca1a886c70e66 Mon Sep 17 00:00:00 2001 From: "J. Christian Heide" Date: Thu, 26 Sep 2024 10:13:21 +0200 Subject: [PATCH] Fix math in readme --- Readme.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Readme.md b/Readme.md index f20e169..a0cf4ee 100644 --- a/Readme.md +++ b/Readme.md @@ -184,9 +184,9 @@ refers to the number of position an alignment maps to. - Unique (best alignment maps to one position): $1$ - Pseudo-unique (best alignment maps to one position, but, with worse score, also to - others): $\frac{\text{AS}_\text{best}}{\text{AS}_\text{best} + \sum{\text{AS}_\text{subopt} |\text{subopt_alignment}|}}$ + others): $\frac{\text{AS}_\text{best}}{\text{AS}_\text{best} + \sum{\text{AS}_\text{subopt} |\text{subopt}|}}$ - Non-unique (best alignment maps to multiple - positions): $\frac{1}{|\text{best_alignment}|}$ + positions): $\frac{1}{|\text{best}|}$ Mapping quality is defined as the PHRED-scaled probability that an alignment is incorrect. Hence the above probabilities are PHRED-scaled, and, for better compatibility with `BWA`, confined to the interval