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.travis.yml
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.travis.yml
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language: c
sudo: false
install:
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install md5sha1sum; fi
- source devtools/travis-ci/install_miniconda.sh
before_script:
- conda create -q -y --name testenv python=$CONDA_PY
- source activate testenv
- conda build -c bioconda -c R --python $CONDA_PY ./devtools/conda-recipe/ # Build the conda recipe for the latest dev
- conda install -c bioconda -c R --use-local -yq cnvkit # Install the locally built package and its requirements
- conda install -c bioconda -c R -yq pysam==$PYSAM # Install the version of pysam desired for testing
- conda remove cnvkit -y -q # Remove the conda cnvkit package but keep the dependencies installed
- python setup.py install # Install directly from source
- cd test/
# For codecov.io
- pip install codecov
script:
- coverage run test_cnvlib.py
after_success:
- coverage report
- codecov
os:
- osx
- linux
env:
- CONDA_PY=2.7 PYSAM=0.8.4
- CONDA_PY=2.7 PYSAM=0.9.0
- CONDA_PY=3.5 PYSAM=0.8.4
- CONDA_PY=3.5 PYSAM=0.9.0