Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

twixread: VD starVIBE data #247

Open
mckib2 opened this issue Feb 16, 2021 · 2 comments
Open

twixread: VD starVIBE data #247

mckib2 opened this issue Feb 16, 2021 · 2 comments

Comments

@mckib2
Copy link

mckib2 commented Feb 16, 2021

Does twixread support reading VD radial data? I have starVIBE raw data that I am unable to get twixread to handle. Could be related to #186

On latest master:

./bart twixread -A meas_MID00026_FID08491_t1_starvibe_60spokes_benz.dat test
WARN: BART version is not reproducible.
VD Header. MeasID: 26 FileID: 8491 Scans: 2
Patient: xxxxxxxxxxxxxxx
Protocol: t1_starvibe_60spokes_benz
VD Header. MeasID: 26 FileID: 8491 Scans: 2
Patient: xxxxxxxxxxxxxxx
Protocol: t1_starvibe_60spokes_benz
ERROR: shared cfl test.cfl
Aborted (core dumped)

Specifying -x384 -r60 -c12 also does not help -- it appears to be reading the header incorrectly:

./bart twixread -x384 -c12 -r60 meas_MID00026_FID08491_t1_starvibe_60spokes_benz.dat test
WARN: BART version is not reproducible.
VD Header. MeasID: 26 FileID: 8491 Scans: 2
Patient: xxxxxxxxxxxxxxx
Protocol: t1_starvibe_60spokes_benz
WARN: Wrong number of samples: 384 != 24912.
WARN: Stopping.

Any clarification or help would be appreciated. I've never had issues with reading Cartesian VB data, but VD seems to encounter numerous issues.

@mscipio
Copy link

mscipio commented Feb 15, 2022

I have been trying to use twixread to decode both spiral and radial VD twix files, and I still get the same type of error.

Has any progress been made (or planned) in this direction?

@uecker
Copy link
Member

uecker commented Jun 23, 2022

There were some improvements on the master branch.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants