diff --git a/workflow/envs/env.yaml b/workflow/envs/env.yaml index d2aa52b..afe87b2 100644 --- a/workflow/envs/env.yaml +++ b/workflow/envs/env.yaml @@ -12,7 +12,7 @@ dependencies: - bedtools - samtools>=1.9 - pysam - - snakemake>=7.8 + - snakemake>=7.25.0 - snakefmt - bwa - pigz diff --git a/workflow/scripts/ntn_bam_to_contacts.py b/workflow/scripts/ntn_bam_to_contacts.py index f668949..5e26b29 100755 --- a/workflow/scripts/ntn_bam_to_contacts.py +++ b/workflow/scripts/ntn_bam_to_contacts.py @@ -100,7 +100,7 @@ def main(): # print('extra field:', extra_field, file=sys.stderr) alignments += parse_extra_alignments(extra_field) - for (mapped_seq, mapped_pos) in alignments: + for mapped_seq, mapped_pos in alignments: print( "{}\t{}\t{}\t{}\t{}\t{}\t1".format( original_location[0],