From 568f30b24949ad6d9319c2bc422ffaa480ce8dce Mon Sep 17 00:00:00 2001
From: Martin Smith <martins@gmail.com>
Date: Thu, 17 Sep 2020 10:12:52 +0100
Subject: [PATCH] v1.2.1

---
 DESCRIPTION   | 8 ++++----
 NEWS.md       | 2 +-
 codemeta.json | 8 ++++----
 3 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index ba9d2ba6..34661ae5 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: TreeDist
 Type: Package
 Title: Distances Between Phylogenetic Trees
-Version: 1.2.0.9000
+Version: 1.2.1
 Authors@R: c(person("Martin R.", 'Smith',
                   email="martin.smith@durham.ac.uk", 
                   role=c("aut", "cre", "cph", "prg"), 
@@ -30,8 +30,8 @@ Description: Implements measures of tree similarity, including
   Calculates the median of a set of trees under any distance metric.
 Copyright: Incorporates Jonker-Volgenant Linear Assignment Problem 
   implementation by Roy Jonker, modified by Yong Yang after Yi Cao.
-URL: https://ms609.github.io/TreeDist/, https://github.com/ms609/TreeDist
-BugReports: https://github.com/ms609/TreeDist/issues
+URL: https://ms609.github.io/TreeDist/, https://github.com/ms609/TreeDist/
+BugReports: https://github.com/ms609/TreeDist/issues/
 Depends: 
   R (>= 3.4.0),
   stats
@@ -56,7 +56,7 @@ Suggests:
   TreeDistData (> 0.1.0),
   TreeSearch,
   vdiffr
-Additional_repositories: https://ms609.github.io/packages
+Additional_repositories: https://ms609.github.io/packages/
 RdMacros: Rdpack
 VignetteBuilder: knitr
 LinkingTo: Rcpp
diff --git a/NEWS.md b/NEWS.md
index 3d5339e6..dd2d0dc7 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,4 +1,4 @@
-# TreeDist 1.2.0.9000 (development)
+# TreeDist 1.2.1
 
 - Import RdMacros package 'RdPack'.
 
diff --git a/codemeta.json b/codemeta.json
index 37b2ea04..bae4d754 100644
--- a/codemeta.json
+++ b/codemeta.json
@@ -7,10 +7,10 @@
   "identifier": "TreeDist",
   "description": "Implements measures of tree similarity, including \n  information-based generalized Robinson-Foulds distances\n  (Phylogenetic Information Distance, Clustering Information Distance,\n  Matching Split Information Distance; Smith, 2020)\n  <doi:10.1093/bioinformatics/btaa614>; \n  Jaccard-Robinson-Foulds distances (Bocker et al. 2013)\n  <doi:10.1007/978-3-642-40453-5_13>, \n  including the Nye et al. (2006) metric <doi:10.1093/bioinformatics/bti720>;\n  the Matching Split Distance (Bogdanowicz & Giaro 2012)\n  <doi:10.1109/TCBB.2011.48>;\n  Maximum Agreement Subtree distances;\n  the Kendall-Colijn (2016) distance <doi:10.1093/molbev/msw124>, and the\n  Nearest Neighbour Interchange (NNI) distance, approximated per Li et al. \n  (1996) <doi:10.1007/3-540-61332-3_168>.\n  Calculates the median of a set of trees under any distance metric.",
   "name": "TreeDist: Distances Between Phylogenetic Trees",
-  "codeRepository": "https://github.com/ms609/TreeDist",
-  "issueTracker": "https://github.com/ms609/TreeDist/issues",
+  "codeRepository": "https://github.com/ms609/TreeDist/",
+  "issueTracker": "https://github.com/ms609/TreeDist/issues/",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "1.2.0.9000",
+  "version": "1.2.1",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -384,5 +384,5 @@
     "name": "Comprehensive R Archive Network (CRAN)",
     "url": "https://cran.r-project.org"
   },
-  "fileSize": "8346.313KB"
+  "fileSize": "8346.417KB"
 }