diff --git a/codemeta.json b/codemeta.json index 6ff4d1f8..11a24624 100644 --- a/codemeta.json +++ b/codemeta.json @@ -2,10 +2,10 @@ "@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "identifier": "TreeDist", - "description": "Implements measures of tree similarity, including information-based generalized Robinson-Foulds distances (Phylogenetic Information Distance, Clustering Information Distance, Matching Split Information Distance; Smith, 2020) ; Jaccard-Robinson-Foulds distances (Bocker et al. 2013) , including the Nye et al. (2006) metric ; the Matching Split Distance (Bogdanowicz & Giaro 2012) ; Maximum Agreement Subtree distances; the Kendall-Colijn (2016) distance , and the Nearest Neighbour Interchange (NNI) distance, approximated per Li et al. (1996) . Includes tools for visualizing mappings of tree space, for calculating the median of sets of trees, and for computing the information content of trees and splits.", + "description": "Implements measures of tree similarity, including information-based generalized Robinson-Foulds distances (Phylogenetic Information Distance, Clustering Information Distance, Matching Split Information Distance; Smith 2020) ; Jaccard-Robinson-Foulds distances (Bocker et al. 2013) , including the Nye et al. (2006) metric ; the Matching Split Distance (Bogdanowicz & Giaro 2012) ; Maximum Agreement Subtree distances; the Kendall-Colijn (2016) distance , and the Nearest Neighbour Interchange (NNI) distance, approximated per Li et al. (1996) . Includes tools for visualizing mappings of tree space (Smith 2022) , for calculating the median of sets of trees, and for computing the information content of trees and splits.", "name": "TreeDist: Calculate and Map Distances Between Phylogenetic Trees", - "codeRepository": "https://github.com/ms609/TreeDist/", "relatedLink": "https://ms609.github.io/TreeDist/", + "codeRepository": "https://github.com/ms609/TreeDist/", "issueTracker": "https://github.com/ms609/TreeDist/issues/", "license": "https://spdx.org/licenses/GPL-3.0", "version": "2.2.0.9001", @@ -14,7 +14,7 @@ "name": "R", "url": "https://r-project.org" }, - "runtimePlatform": "R Under development (unstable) (2021-10-05 r81008)", + "runtimePlatform": "R version 4.1.2 (2021-11-01)", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -450,7 +450,7 @@ "SystemRequirements": "C++14" }, "keywords": ["phylogenetics", "tree-distance"], - "fileSize": "1788.913KB", + "fileSize": "1074.462KB", "citation": [ { "@type": "ScholarlyArticle", @@ -478,6 +478,30 @@ } } }, + { + "@type": "ScholarlyArticle", + "datePublished": "2022", + "author": [ + { + "@type": "Person", + "givenName": ["Martin", "R."], + "familyName": "Smith" + } + ], + "name": "Robust analysis of phylogenetic tree space", + "identifier": "10.1093/sysbio/syab100", + "pagination": "syab100", + "@id": "https://doi.org/10.1093/sysbio/syab100", + "sameAs": "https://doi.org/10.1093/sysbio/syab100", + "isPartOf": { + "@type": "PublicationIssue", + "datePublished": "2022", + "isPartOf": { + "@type": ["PublicationVolume", "Periodical"], + "name": "Systematic Biology" + } + } + }, { "@type": "SoftwareSourceCode", "datePublished": "2020",