From 9be7dba7d76c165633dc94a87855f592f34f04ba Mon Sep 17 00:00:00 2001 From: "Martin R. Smith" <1695515+ms609@users.noreply.github.com> Date: Thu, 8 Feb 2024 10:31:27 +0000 Subject: [PATCH] Update ape URL --- R/TreeDist-package.R | 4 ++-- man/TreeDist-package.Rd | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/R/TreeDist-package.R b/R/TreeDist-package.R index b1a1b4c7..5446f97d 100644 --- a/R/TreeDist-package.R +++ b/R/TreeDist-package.R @@ -98,7 +98,7 @@ #' #' Other R packages implementing tree distance functions include: #' -#' * [ape](http://ape-package.ird.fr/): +#' * [ape](https://emmanuelparadis.github.io/): #' - `cophenetic.phylo()`: Cophenetic distance #' - `dist.topo()`: Path (topological) distance, Robinson–Foulds distance. #' * [phangorn](https://cran.r-project.org/package=phangorn) @@ -106,7 +106,7 @@ #' * [Quartet](https://ms609.github.io/Quartet/): Triplet and Quartet distances, #' using the tqDist algorithm. #' * [TBRDist](https://ms609.github.io/TBRDist/): TBR and SPR distances on -#' unrooted trees, using the 'uspr; C library. +#' unrooted trees, using the 'uspr' C library. #' * [distory](https://cran.r-project.org/package=distory) (unmaintained): #' Geodesic distance #' diff --git a/man/TreeDist-package.Rd b/man/TreeDist-package.Rd index 59a89b1f..0cdc1ab5 100644 --- a/man/TreeDist-package.Rd +++ b/man/TreeDist-package.Rd @@ -114,7 +114,7 @@ R using \code{vignette(package = "TreeDist")}. Other R packages implementing tree distance functions include: \itemize{ -\item \href{http://ape-package.ird.fr/}{ape}: +\item \href{https://emmanuelparadis.github.io/}{ape}: \itemize{ \item \code{cophenetic.phylo()}: Cophenetic distance \item \code{dist.topo()}: Path (topological) distance, Robinson–Foulds distance. @@ -126,7 +126,7 @@ Other R packages implementing tree distance functions include: \item \href{https://ms609.github.io/Quartet/}{Quartet}: Triplet and Quartet distances, using the tqDist algorithm. \item \href{https://ms609.github.io/TBRDist/}{TBRDist}: TBR and SPR distances on -unrooted trees, using the 'uspr; C library. +unrooted trees, using the 'uspr' C library. \item \href{https://cran.r-project.org/package=distory}{distory} (unmaintained): Geodesic distance }