diff --git a/dev/CONTRIBUTING.html b/dev/CONTRIBUTING.html index 10a14cf77..1b59341c8 100644 --- a/dev/CONTRIBUTING.html +++ b/dev/CONTRIBUTING.html @@ -126,11 +126,16 @@

Pull request processroxygen2 to build documentation.
-
  • We use testthat. Contributions with test cases included are easier to accept.
    • +
  • We use roxygen2 to build documentation.
    • +
  • We use testthat. Contributions with test cases included are easier to accept.
    • +
  • We use semantic versioning.
  • For user-facing changes, add a bullet to the top of NEWS.md below the current development version header describing the changes made followed by your GitHub username, and links to relevant issue(s)/PR(s).
    • +

    Contributor license agreement

    +

    Contributors agree to reassign the copyright of their contributions to the maintainers of the package.

    +
    +

    Code of Conduct

    Please note that the project is released with a Contributor Code of Conduct. By contributing to this project you agree to abide by its terms.

    diff --git a/dev/articles/Using-TreeDist.html b/dev/articles/Using-TreeDist.html index 16d1478d4..a53d260b6 100644 --- a/dev/articles/Using-TreeDist.html +++ b/dev/articles/Using-TreeDist.html @@ -204,12 +204,12 @@

    Multiple comparisonsTreeDistance(oneTree, twoTrees) 
    ##       one       two 
-## 0.8660070 0.7573221
    +## 0.8390473 0.8386626 
     TreeDistance(twoTrees, threeTrees)
    ##             a         b         c
-## one 0.7696682 0.8310256 0.7282568
-## two 0.6641291 0.8385883 0.4734767
    +## one 0.8277881 0.6278379 0.7178329 +## two 0.8094458 0.7718845 0.7914965
    diff --git a/dev/articles/different-leaves_files/figure-html/full-list-1.png b/dev/articles/different-leaves_files/figure-html/full-list-1.png index 08a027755..40590763c 100644 Binary files a/dev/articles/different-leaves_files/figure-html/full-list-1.png and b/dev/articles/different-leaves_files/figure-html/full-list-1.png differ diff --git a/dev/articles/different-leaves_files/figure-html/full-list-2.png b/dev/articles/different-leaves_files/figure-html/full-list-2.png index 9a1a223d6..04349d42a 100644 Binary files a/dev/articles/different-leaves_files/figure-html/full-list-2.png and b/dev/articles/different-leaves_files/figure-html/full-list-2.png differ diff --git a/dev/articles/information_files/figure-html/mackay-8-1-1.png b/dev/articles/information_files/figure-html/mackay-8-1-1.png index a25dc2d16..b5a1550d0 100644 Binary files a/dev/articles/information_files/figure-html/mackay-8-1-1.png and b/dev/articles/information_files/figure-html/mackay-8-1-1.png differ diff --git a/dev/articles/landscapes.html b/dev/articles/landscapes.html index e1fc1a7a3..033d8ffa6 100644 --- a/dev/articles/landscapes.html +++ b/dev/articles/landscapes.html @@ -132,7 +132,8 @@ - + +
    @@ -254,8 +255,8 @@

    } else { print("Run `install.packages('plotly')` to view this output") }

    -
    -

    (Use the mouse to reorient)

    +
    +

    (Use the mouse to reorient)

    References

    diff --git a/dev/articles/landscapes_files/htmltools-fill-0.5.8/fill.css b/dev/articles/landscapes_files/htmltools-fill-0.5.8/fill.css new file mode 100644 index 000000000..841ea9d59 --- /dev/null +++ b/dev/articles/landscapes_files/htmltools-fill-0.5.8/fill.css @@ -0,0 +1,21 @@ +@layer htmltools { + .html-fill-container { + display: flex; + flex-direction: column; + /* Prevent the container from expanding vertically or horizontally beyond its + parent's constraints. */ + min-height: 0; + min-width: 0; + } + .html-fill-container > .html-fill-item { + /* Fill items can grow and shrink freely within + available vertical space in fillable container */ + flex: 1 1 auto; + min-height: 0; + min-width: 0; + } + .html-fill-container > :not(.html-fill-item) { + /* Prevent shrinking or growing of non-fill items */ + flex: 0 0 auto; + } +} diff --git a/dev/articles/treespace_files/figure-html/umatrix-1.png b/dev/articles/treespace_files/figure-html/umatrix-1.png index 60d1f9350..ae1807aa8 100644 Binary files a/dev/articles/treespace_files/figure-html/umatrix-1.png and b/dev/articles/treespace_files/figure-html/umatrix-1.png differ diff --git a/dev/pkgdown.yml b/dev/pkgdown.yml index a469adf62..42685138d 100644 --- a/dev/pkgdown.yml +++ b/dev/pkgdown.yml @@ -11,7 +11,7 @@ articles: landscapes: landscapes.html treespace: treespace.html using-distances: using-distances.html -last_built: 2024-02-29T08:21Z +last_built: 2024-04-03T13:44Z urls: reference: https://ms609.github.io/TreeDist/reference article: https://ms609.github.io/TreeDist/articles