## one two
-## 0.7080825 0.7803401
TreeDistance(twoTrees, threeTrees)## a b c
-## one 0.8344474 0.7402443 0.7804603
-## two 0.6643748 0.8351871 0.6800334(Use the mouse to reorient)
+ +(Use the mouse to reorient)
Smith, M.R. (2020b). TreeDist: Distances between Phylogenetic Trees. R package version 2.6.2.9001. Comprehensive R Archive Network. doi:10.5281/zenodo.3528124
+Smith, M.R. (2020b). TreeDist: Distances between Phylogenetic Trees. R package version 2.6.3.9000. Comprehensive R Archive Network. doi:10.5281/zenodo.3528124
@Manual{TreeDist,
- title = {TreeDist: Distances between Phylogenetic Trees. R package version 2.6.2.9001},
+ title = {TreeDist: Distances between Phylogenetic Trees. R package version 2.6.3.9000},
author = {Martin R. Smith},
doi = {10.5281/zenodo.3528124},
journal = {Comprehensive R Archive Network},
diff --git a/dev/index.html b/dev/index.html
index bfd0d674..eb5a3dcd 100644
--- a/dev/index.html
+++ b/dev/index.html
@@ -59,7 +59,7 @@
diff --git a/dev/news/index.html b/dev/news/index.html
index 47e7c3b0..6f9ccee9 100644
--- a/dev/news/index.html
+++ b/dev/news/index.html
@@ -23,7 +23,7 @@
@@ -108,9 +108,13 @@ Changelog
-TreeDist 2.6.2.9001 (development)
-- Fix bug when comparing a “multiPhylo” object containing a single tree.
-- Documentation clarification: finding non-matching leaves.
+TreeDist 2.6.3.9000 (development)
+- Support unrooted trees in
VisualizeMatching() (#103).
+
+
+TreeDist 2.6.3 (2023-08-25)2023-08-25
+Fix bug when comparing a “multiPhylo” object containing a single tree.
Documentation clarification: finding non-matching leaves.
TreeDist 2.6.2 (2023-06-28)2023-06-29
diff --git a/dev/pkgdown.yml b/dev/pkgdown.yml
index c5f48912..14e66989 100644
--- a/dev/pkgdown.yml
+++ b/dev/pkgdown.yml
@@ -11,7 +11,7 @@ articles:
landscapes: landscapes.html
treespace: treespace.html
using-distances: using-distances.html
-last_built: 2023-07-14T13:10Z
+last_built: 2023-09-07T07:20Z
urls:
reference: https://ms609.github.io/TreeDist/reference
article: https://ms609.github.io/TreeDist/articles
diff --git a/dev/reference/AllSplitPairings.html b/dev/reference/AllSplitPairings.html
index a0b670bc..f429fb96 100644
--- a/dev/reference/AllSplitPairings.html
+++ b/dev/reference/AllSplitPairings.html
@@ -28,7 +28,7 @@
diff --git a/dev/reference/CalculateTreeDistance.html b/dev/reference/CalculateTreeDistance.html
index ea637ed1..6f50c62a 100644
--- a/dev/reference/CalculateTreeDistance.html
+++ b/dev/reference/CalculateTreeDistance.html
@@ -23,7 +23,7 @@
diff --git a/dev/reference/CompareAll.html b/dev/reference/CompareAll.html
index 3e717ac0..319a5d61 100644
--- a/dev/reference/CompareAll.html
+++ b/dev/reference/CompareAll.html
@@ -24,7 +24,7 @@
diff --git a/dev/reference/Entropy.html b/dev/reference/Entropy.html
index 7c937845..d413d304 100644
--- a/dev/reference/Entropy.html
+++ b/dev/reference/Entropy.html
@@ -25,7 +25,7 @@
diff --git a/dev/reference/GeneralizedRF.html b/dev/reference/GeneralizedRF.html
index ff36c38f..47446bdb 100644
--- a/dev/reference/GeneralizedRF.html
+++ b/dev/reference/GeneralizedRF.html
@@ -24,7 +24,7 @@
diff --git a/dev/reference/JaccardRobinsonFoulds.html b/dev/reference/JaccardRobinsonFoulds.html
index 2cc8a415..4fe875c1 100644
--- a/dev/reference/JaccardRobinsonFoulds.html
+++ b/dev/reference/JaccardRobinsonFoulds.html
@@ -27,7 +27,7 @@
diff --git a/dev/reference/KendallColijn.html b/dev/reference/KendallColijn.html
index b670d638..46e2a14b 100644
--- a/dev/reference/KendallColijn.html
+++ b/dev/reference/KendallColijn.html
@@ -24,7 +24,7 @@
diff --git a/dev/reference/LAPJV.html b/dev/reference/LAPJV.html
index 5d8aa6b9..192b1589 100644
--- a/dev/reference/LAPJV.html
+++ b/dev/reference/LAPJV.html
@@ -25,7 +25,7 @@
diff --git a/dev/reference/MASTSize.html b/dev/reference/MASTSize.html
index 7c5f72d9..20a0638e 100644
--- a/dev/reference/MASTSize.html
+++ b/dev/reference/MASTSize.html
@@ -30,7 +30,7 @@
diff --git a/dev/reference/MSTSegments.html b/dev/reference/MSTSegments.html
index 47364a5d..2c238686 100644
--- a/dev/reference/MSTSegments.html
+++ b/dev/reference/MSTSegments.html
@@ -28,7 +28,7 @@
diff --git a/dev/reference/MapTrees.html b/dev/reference/MapTrees.html
index 11879562..2abb026c 100644
--- a/dev/reference/MapTrees.html
+++ b/dev/reference/MapTrees.html
@@ -26,7 +26,7 @@
diff --git a/dev/reference/MappingQuality.html b/dev/reference/MappingQuality.html
index aa38d9cf..62a5a9ed 100644
--- a/dev/reference/MappingQuality.html
+++ b/dev/reference/MappingQuality.html
@@ -29,7 +29,7 @@
diff --git a/dev/reference/MatchingSplitDistance.html b/dev/reference/MatchingSplitDistance.html
index 9f46fdbb..f5efbf29 100644
--- a/dev/reference/MatchingSplitDistance.html
+++ b/dev/reference/MatchingSplitDistance.html
@@ -26,7 +26,7 @@
diff --git a/dev/reference/MeilaVariationOfInformation.html b/dev/reference/MeilaVariationOfInformation.html
index 7b8f8591..229a74aa 100644
--- a/dev/reference/MeilaVariationOfInformation.html
+++ b/dev/reference/MeilaVariationOfInformation.html
@@ -25,7 +25,7 @@
diff --git a/dev/reference/NNIDist.html b/dev/reference/NNIDist.html
index d3c8dc81..adc63b53 100644
--- a/dev/reference/NNIDist.html
+++ b/dev/reference/NNIDist.html
@@ -27,7 +27,7 @@
diff --git a/dev/reference/NormalizeInfo.html b/dev/reference/NormalizeInfo.html
index 76a30036..6754ba40 100644
--- a/dev/reference/NormalizeInfo.html
+++ b/dev/reference/NormalizeInfo.html
@@ -23,7 +23,7 @@
@@ -151,11 +151,6 @@ Arguments
Additional parameters to InfoInTree() or how.
Function that takes as inputs tree1Info and tree2Info, and
-returns a normalizing constant against which to divide unnormalized.
Logical matrices with columns specifying membership of each corresponding matched clade.