2.9.1

• Avoid false positive in MKL testing environment.

v2.9.0

• VisualizeMatching() allows more control over output format, and returns the matching (#124).

• DistanceFromMedian(Average = median) allows calculation of MAD.

• SpectralEigens() returns correct eigenvalues (smallest was overlooked).

• SpectralEigens() handles values of nEig larger than the input.

• Anticipate new behaviour of unlist(use.names = TRUE) in R 4.5.

v2.8.0

• Islands() allows the identification of islands of trees.

• Internal implementation of path and SPR distances, removing dependency on phangorn (and thus R 4.4).

• Add progress bar within .MaxValue()

v2.7.1

• Documentation improvements.

• Fix KCDiameter.multiPhylo() for multiple trees.

v2.7.0

• Fix calculation error in StrainCol().

• App: Display strain in 3D tree space viewer.

• Support for distances between larger trees.

• Support unrooted trees in VisualizeMatching() (#103).

v2.6.3

• Fix bug when comparing a "multiPhylo" object containing a single tree.

• Documentation clarification: finding non-matching leaves.

v2.6.2

• Support non-square matrices in LAPJV().

v2.6.1

• StopParallel() gains quietly argument to suppress unnecessary messages.

• Use "PlotTools" package for spectrum legends.

• Minor documentation tweaks.

v2.6.0

• Support comparison of trees with different tips.

• Fix caching errors in MapDist() (#98).

• Update tests for compatibility with ape 5.7

v1.0.0

Initial release, building on some draft functions included in 'TreeSearch' 0.3.2.9005.