From 7f16761f1809638d28fe2694cece9ce6a6f5dbac Mon Sep 17 00:00:00 2001 From: huyu335 <51341407+huyu335@users.noreply.github.com> Date: Mon, 26 Aug 2024 17:38:54 -0400 Subject: [PATCH] Update test bam locations --- modules/msk/ppflagfixer/tests/main.nf.test | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/modules/msk/ppflagfixer/tests/main.nf.test b/modules/msk/ppflagfixer/tests/main.nf.test index 59925080..514b1d36 100644 --- a/modules/msk/ppflagfixer/tests/main.nf.test +++ b/modules/msk/ppflagfixer/tests/main.nf.test @@ -18,8 +18,8 @@ nextflow_process { meta = [ id:'test' ] // meta map input[0] = [ meta, - file(params.test_data_mskcc['bam_files']['test_argos_sample_1_normal_bam'], checkIfExists: true), - file(params.test_data_mskcc['bam_files']['test_argos_sample_1_normal_bam_bai'], checkIfExists: true) + file(params.test_data_mskcc['argos']['test_argos_sample_1_normal_bam'], checkIfExists: true), + file(params.test_data_mskcc['argos']['test_argos_sample_1_normal_bam_bai'], checkIfExists: true) ] """ } @@ -42,8 +42,8 @@ nextflow_process { meta = [ id:'test' ] // meta map input[0] = [ meta, - file(params.test_data_mskcc['bam_files']['test_argos_sample_1_tumor_bam'], checkIfExists: true), - file(params.test_data_mskcc['bam_files']['test_argos_sample_1_tumor_bam_bai'], checkIfExists: true) + file(params.test_data_mskcc['argos']['test_argos_sample_1_tumor_bam'], checkIfExists: true), + file(params.test_data_mskcc['argos']['test_argos_sample_1_tumor_bam_bai'], checkIfExists: true) ] """ }