From 74b4e820745ddcc6b86d3ba768b2a9c5218c2e3c Mon Sep 17 00:00:00 2001 From: Anne Marie Noronha Date: Tue, 22 Aug 2023 10:09:08 -0400 Subject: [PATCH] removed unnecessary lines --- agfusion/parsers.py | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/agfusion/parsers.py b/agfusion/parsers.py index 0a609df..7e90399 100644 --- a/agfusion/parsers.py +++ b/agfusion/parsers.py @@ -778,9 +778,6 @@ class _CommonFusionFormatBasic(_Parser): Defined here: https://github.com/ccmbioinfo/MetaFusion/wiki/metafusion-file-formats#cff-fields """ - def __init__(self,logger): - super().__init__(logger) - def _load_data_indices(self,infile,data_indices): fin = open(infile, "r") n = 0 @@ -825,7 +822,7 @@ def __init__(self, infile, logger): "gene3prime_junction": 4, } - self._load_data_indices(infile,data_indices) + self._load_data_indices(infile, data_indices) class CommonFusionFormatReann(_CommonFusionFormatBasic): """ @@ -843,7 +840,7 @@ def __init__(self, infile, logger): "gene3prime_junction": 4, } - self._load_data_indices(infile,data_indices) + self._load_data_indices(infile, data_indices) class CommonFusionFormatTranscript(_CommonFusionFormatBasic): """