From a5034d154d17cedacf1806816ebfa6d126974465 Mon Sep 17 00:00:00 2001 From: Suleyman Vural Date: Mon, 3 Jun 2024 14:06:00 -0400 Subject: [PATCH 1/2] Goliath update, adding cnv purity --- Goliath | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Goliath b/Goliath index d4b4f1b..f6e3db8 160000 --- a/Goliath +++ b/Goliath @@ -1 +1 @@ -Subproject commit d4b4f1befcb121e9af9965963ef74f4aa1174ad8 +Subproject commit f6e3db8ff32e672762a4d032296776fa6754659f From 7b93dcdeb6cdca0dbf8571dc10299ed2115c133f Mon Sep 17 00:00:00 2001 From: Suleyman Vural Date: Mon, 3 Jun 2024 14:07:49 -0400 Subject: [PATCH 2/2] update container to added purity --- container/build.sh | 2 +- cwl/project_level_report.cwl | 2 +- cwl/report.cwl | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/container/build.sh b/container/build.sh index f55db7d..6821485 100755 --- a/container/build.sh +++ b/container/build.sh @@ -3,4 +3,4 @@ [ -e report ] && rm -rf report mkdir report cp -r ../* report/ -docker build -t "mskcc/argos_report:1.0.5" . +docker build -t "mskcc/argos_report:1.0.6" . diff --git a/cwl/project_level_report.cwl b/cwl/project_level_report.cwl index 4edc58e..b320163 100644 --- a/cwl/project_level_report.cwl +++ b/cwl/project_level_report.cwl @@ -10,7 +10,7 @@ requirements: StepInputExpressionRequirement: {} InlineJavascriptRequirement: {} DockerRequirement: - dockerPull: mskcc/argos_report:1.0.5 + dockerPull: mskcc/argos_report:1.0.6 inputs: request_id: diff --git a/cwl/report.cwl b/cwl/report.cwl index 560a8f7..b50e0fd 100644 --- a/cwl/report.cwl +++ b/cwl/report.cwl @@ -5,7 +5,7 @@ class: CommandLineTool baseCommand: [ "compile_sample_level.R" ] requirements: DockerRequirement: - dockerPull: mskcc/argos_report:1.0.5 + dockerPull: mskcc/argos_report:1.0.6 inputs: request_id: