pyproject.toml

[tool.poetry]
name = "pydesigner"
version = "2.0.0"
description = "A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline"
license = "Proprietary"
authors = ["MUSC Brain Imaging Diffusion Group (BRIDGE) Lab <bridge@musc.edu>"]
maintainers = [
    "Siddhartha Dhiman <sid.kill3r@gmail.com>",
    "Ryn Thorn <keithka@musc.edu>",
    "Hunter Moss <mossh@musc.edu>"
]
readme = "README.rst"
homepage = "https://pypi.org/project/PyDesigner-DWI/"
repository = "https://github.com/muscbridge/PyDesigner"
documentation = "https://pydesigner.readthedocs.io/en/latest/"
keywords = ["python", "mrtrix", "dipy", "diffusion", "imaging", "dti", "dki", "fbi", "fbwm"]
classifiers = [
    "Programming Language :: Python",
    "License :: Free To Use But Restricted",
    "Operating System :: OS Independent",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Information Analysis",
    "Topic :: Scientific/Engineering :: Mathematics",
    "Topic :: Scientific/Engineering :: Physics",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
    "Topic :: Software Development :: Libraries :: Python Modules"
]

[tool.poetry.dependencies]
python = ">=3.11, <4.0"
numpy = ">=1.20.0, <1.26.0"
scipy = ">=1.5.0, <2.0.0"
joblib = ">=1.2.0, <2.0.0"
tqdm = ">=4.65.0, <5.0.0"
multiprocess = ">=0.70.00, <0.80.00"
nibabel = ">=5.0.0, <6.0.0"
dipy = ">=1.7.0, <2.0.0"
cvxpy = ">1.3.0, <2.0.0"
matplotlib = ">=3.7.0, <4.0.0"

[tool.poetry.scripts]
pydesigner = "pydesigner.main:main"

[tool.poetry.group.dev.dependencies]
pytest = ">=7.4.0, <8.0.0"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

[tool.black]
line-length = 120
target-version = ["py311", "py312"]
exclude = "docs/"

[tool.ruff]
# Enable the pycodestyle (`E`) and Pyflakes (`F`) rules by default.
# Unlike Flake8, Ruff doesn't enable pycodestyle warnings (`W`) or
# McCabe complexity (`C901`) by default.
select = ["E", "F", "I"]
ignore = []

# Allow fix for all enabled rules (when `--fix`) is provided.
fixable = ["ALL"]
unfixable = []

# Exclude a variety of commonly ignored directories.
exclude = [
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".git-rewrite",
    ".hg",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".pytype",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "venv",
    "docs",
    "setup.py",
]

# Same as Black
line-length = 120

# Allow unused variables when underscore-prefixed.
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"

# Assume Python 3.11
target-version = "py311"

[tool.ruff.per-file-ignores]
"pydesigner/fitting/__init__.py" = ["F401"]
"pydesigner/plotting/__init__.py" = ["F401"]
"pydesigner/postprocessing/__init__.py" = ["F401"]
"pydesigner/preprocessing/__init__.py" = ["F401"]
"pydesigner/system/__init__.py" = ["F401"]
"pydesigner/tractography/__init__.py" = ["F401"]
"tests/test_preprocessing_mrinfoutil.py" = ["E501"]