Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Request for lexicon addition and additional taxonomic names. #255

Open
Lerato-nephali opened this issue Jul 21, 2022 · 2 comments
Open

Request for lexicon addition and additional taxonomic names. #255

Lerato-nephali opened this issue Jul 21, 2022 · 2 comments

Comments

@Lerato-nephali
Copy link

Hi Ming,

Can I kindly request for the addition of lexicons (NCBI Taxomony ID) of the following bacteria strains on the REDU sample information template?

  1. Xanthomonas campestris 8004 | 314565  
  2. Pseudomonas coronafaciens | 235275  
  3. Pseudomonas maculicola | 59511  
  4. Pseudomonas syringae pv. tabaci | 322
  5. Pseudomonas syringae pv. tomato DC3000 | 223283

I could not find the NCBI Taxomomy ID for the following strains, so I listed the closest/the umbrella ID of the species

  1. Bacillus licheniformis M017 |   | 1402
  2. Bacillus licheniformis 1001 |   | 1402
  3. Bacillus laterosporus CM3/33 |   | 1465
  4. Bacillus megaterium 3-76 |   | 1404
  5. Bacillus subtilis 10SI |   | 1423
  6. Bacillus amyloliquefaciens CM5 |   | 1390
  7. Bacilius pumilus 1875 |   | 1408

Thanking you in advance.

Kind regards,
Lerato Nephali

@alan-jarmusch
Copy link
Collaborator

to assist can you please reformat such that NCBI number is first followed by the name listed in NCBI. for example "27334|Penicillium expansum"

@Lerato-nephali
Copy link
Author

314565|Xanthomonas campestris 8004
235275|Pseudomonas coronafaciens
59511|Pseudomonas maculicola
322|Pseudomonas syringae pv. tabaci
223283|Pseudomonas syringae pv. tomato DC3000

I could not find the NCBI Taxomomy ID for the following strains, so I listed the closest/the umbrella ID of the species

1402|Bacillus licheniformis M017
1402|Bacillus licheniformis 1001
1465|Brevibacillus laterosporus CM3/33
1404|Bacillus megaterium 3-76
1423|Bacillus subtilis 10SI
1390|Bacillus amyloliquefaciens CM5
1408|Bacilius pumilus 1875

Thank you.

Kindly,
Lerato

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants