undefined symbol: cublasGemmEx

[Sheng-T]

Hello, I’m trying to get Bonito running on an Ubuntu machine, but I’m encountering the following issue:

File "/opt/conda/lib/python3.8/site-packages/koi/lstm.py", line 2, in <module>
    from koi._runtime import lib
ImportError: /opt/conda/lib/python3.8/site-packages/koi/../ont_koi.libs/libkoi-c1217069.so: undefined symbol: cublasGemmEx

Could you please let me know if this issue is similar to issue #273, or if it might be caused by something else? (ont-koi==0.4.4)

Thank you very much in advance! :)

[davidnewman02]

This looks as if you have an incompatible version of koi/torch/cuda.

Could you please rebuild your environment from scratch and post the full log output of the pip install ont-bonito step and also the result of pip freeze.