The given conda command will install v1.11.3 instead of 2.0

[gwl2]

Describe the bug
The command won't install medaka v2.0 but v 1.11.3
#mamba create -n medaka2 -c conda-forge -c nanoporetech -c bioconda medaka

Logging
Please attach any relevant logging messages. (Use ``` before and after code blocks).

mamba create -n medaka2 -c conda-forge -c nanoporetech -c bioconda medaka

Looking for: ['medaka']

conda-forge/linux-64                                        Using cache
conda-forge/noarch                                          Using cache
nanoporetech/linux-64                                       Using cache
nanoporetech/noarch                                         Using cache
bioconda/linux-64                                           Using cache
bioconda/noarch                                             Using cache
r/linux-64                                                  Using cache
r/noarch                                                    Using cache
pkgs/r/linux-64                                               No change
pkgs/r/noarch                                                 No change
pkgs/main/linux-64                                            No change
pkgs/main/noarch                                              No change

Transaction

  Prefix: /home/user/miniforge3/envs/medaka2

  Updating specs:

   - medaka



  Package                         Version  Build                    Channel           Size
────────────────────────────────────────────────────────────────────────────────────────────
  Install:
────────────────────────────────────────────────────────────────────────────────────────────

  + _libgcc_mutex                     0.1  conda_forge              conda-forge     Cached
  + libstdcxx-ng                   12.2.0  h46fd767_19              conda-forge     Cached
  + ld_impl_linux-64                 2.39  hc81fddc_0               conda-forge      778kB
  + ca-certificates             2022.9.24  ha878542_0               conda-forge      154kB
  + libgfortran5                   12.2.0  h337968e_19              conda-forge     Cached
  + libgomp                        12.2.0  h65d4601_19              conda-forge     Cached
  + libgfortran-ng                 12.2.0  h69a702a_19              conda-forge     Cached
  + _openmp_mutex                     4.5  2_gnu                    conda-forge     Cached
  + libgcc-ng                      12.2.0  h65d4601_19              conda-forge     Cached
  + libuuid                        2.32.1  h7f98852_1000            conda-forge     Cached
  + giflib                          5.2.1  h36c2ea0_2               conda-forge     Cached
  + libiconv                         1.17  h166bdaf_0               conda-forge     Cached
  + libev                            4.33  h516909a_1               conda-forge     Cached
  + libopenblas                    0.3.21  pthreads_h78a6416_3      conda-forge     Cached
  + libnsl                          2.0.0  h7f98852_0               conda-forge     Cached
  + libffi                          3.4.2  h7f98852_5               conda-forge     Cached
  + snappy                          1.1.9  hbd366e4_2               conda-forge     Cached
  + libabseil                  20220623.0  cxx17_h48a1fff_5         conda-forge        1MB
  + jpeg                               9e  h166bdaf_2               conda-forge     Cached
  + re2                        2022.06.01  h27087fc_0               conda-forge      220kB
  + flatbuffers                     2.0.7  h27087fc_0               conda-forge        2MB
  + cudatoolkit                    11.7.0  hd8887f6_10              conda-forge      872MB
  + libdeflate                       1.14  h166bdaf_0               conda-forge       83kB
  + bzip2                           1.0.8  h7f98852_4               conda-forge     Cached
  + xz                              5.2.6  h166bdaf_0               conda-forge     Cached
  + icu                              70.1  h27087fc_0               conda-forge     Cached
  + libzlib                        1.2.13  h166bdaf_4               conda-forge     Cached
  + tar                              1.34  hb2e2bae_1               conda-forge     Cached
  + libblas                         3.9.0  16_linux64_openblas      conda-forge     Cached
  + perl                           5.32.1  2_h7f98852_perl5         conda-forge     Cached
  + nccl                         2.14.3.1  h0800d71_0               conda-forge      152MB
  + zstd                            1.5.2  h6239696_4               conda-forge      459kB
  + tk                             8.6.12  h27826a3_0               conda-forge     Cached
  + libsqlite                      3.40.0  h753d276_0               conda-forge     Cached
  + libprotobuf                    3.21.9  h6239696_0               conda-forge        3MB
  + libpng                         1.6.38  h753d276_0               conda-forge      380kB
  + cudnn                        8.4.1.50  hed8a83a_0               conda-forge      648MB
  + zlib                           1.2.13  h166bdaf_4               conda-forge     Cached
  + libcblas                        3.9.0  16_linux64_openblas      conda-forge     Cached
  + liblapack                       3.9.0  16_linux64_openblas      conda-forge     Cached
  + gsl                               2.7  he838d99_0               conda-forge     Cached
  + tzdata                          2022f  h191b570_0               conda-forge      121kB
  + c-ares                         1.19.1  h5eee18b_0               pkgs/main        116kB
  + ncurses                           6.4  h6a678d5_0               pkgs/main          1MB
  + openssl                        1.1.1w  h7f8727e_0               pkgs/main          4MB
  + libedit                  3.1.20230828  h5eee18b_0               pkgs/main        196kB
  + libnghttp2                     1.52.0  ha637b67_1               pkgs/main        717kB
  + krb5                           1.20.1  h568e23c_1               pkgs/main          1MB
  + k8                              0.2.5  hdcf5f25_4               bioconda        Cached
  + minimap2                         2.28  he4a0461_3               bioconda           1MB
  + readline                        8.1.2  h0f457ee_0               conda-forge     Cached
  + libssh2                        1.10.0  haa6b8db_3               conda-forge     Cached
  + grpc-cpp                       1.47.1  h05bd8bd_7               conda-forge     Cached
  + python                         3.10.6  h582c2e5_0_cpython       conda-forge       30MB
  + libcurl                        7.88.1  h91b91d3_2               pkgs/main        373kB
  + wheel                          0.38.4  pyhd8ed1ab_0             conda-forge     Cached
  + setuptools                     65.5.1  pyhd8ed1ab_0             conda-forge      748kB
  + pip                            22.3.1  pyhd8ed1ab_0             conda-forge     Cached
  + blinker                           1.5  pyhd8ed1ab_0             conda-forge     Cached
  + pyjwt                           2.6.0  pyhd8ed1ab_0             conda-forge     Cached
  + pyasn1                          0.4.8  py_0                     conda-forge     Cached
  + attrs                          22.1.0  pyh71513ae_1             conda-forge       49kB
  + pycparser                        2.21  pyhd8ed1ab_0             conda-forge     Cached
  + cached_property                 1.5.2  pyha770c72_1             conda-forge     Cached
  + cachetools                      5.2.0  pyhd8ed1ab_0             conda-forge       13kB
  + click                           8.1.3  unix_pyhd8ed1ab_2        conda-forge     Cached
  + zipp                           3.10.0  pyhd8ed1ab_0             conda-forge       14kB
  + pyparsing                       3.0.9  pyhd8ed1ab_0             conda-forge     Cached
  + tensorboard-plugin-wit          1.8.1  pyhd8ed1ab_0             conda-forge     Cached
  + pysocks                         1.7.1  pyha2e5f31_6             conda-forge     Cached
  + python-flatbuffers                2.0  pyhd8ed1ab_0             conda-forge     Cached
  + keras                          2.10.0  pyhd8ed1ab_0             conda-forge     Cached
  + gast                            0.4.0  pyh9f0ad1d_0             conda-forge     Cached
  + absl-py                         1.3.0  pyhd8ed1ab_0             conda-forge       98kB
  + typing_extensions               4.4.0  pyha770c72_0             conda-forge     Cached
  + termcolor                       2.1.0  pyhd8ed1ab_0             conda-forge        9kB
  + six                            1.16.0  pyh6c4a22f_0             conda-forge     Cached
  + sortedcontainers                2.4.0  pyhd8ed1ab_0             conda-forge     Cached
  + charset-normalizer              2.1.1  pyhd8ed1ab_0             conda-forge     Cached
  + idna                              3.4  pyhd8ed1ab_0             conda-forge     Cached
  + certifi                     2022.9.24  pyhd8ed1ab_0             conda-forge      159kB
  + progressbar33                     2.4  py_0                     conda-forge     Cached
  + wurlitzer                       3.0.2  pyhd8ed1ab_2             conda-forge       11kB
  + pyasn1-modules                  0.2.7  py_0                     conda-forge     Cached
  + rsa                               4.9  pyhd8ed1ab_0             conda-forge     Cached
  + cached-property                 1.5.2  hd8ed1ab_1               conda-forge     Cached
  + importlib-metadata              5.0.0  pyha770c72_1             conda-forge       24kB
  + packaging                        21.3  pyhd8ed1ab_0             conda-forge       36kB
  + typing-extensions               4.4.0  hd8ed1ab_0               conda-forge        9kB
  + pyu2f                           0.1.5  pyhd8ed1ab_0             conda-forge     Cached
  + google-pasta                    0.2.0  pyh8c360ce_0             conda-forge     Cached
  + astunparse                      1.6.3  pyhd8ed1ab_0             conda-forge     Cached
  + intervaltree                    3.0.2  py_0                     conda-forge     Cached
  + markdown                        3.4.1  pyhd8ed1ab_0             conda-forge     Cached
  + async-timeout                   4.0.2  pyhd8ed1ab_0             conda-forge     Cached
  + hdf5                           1.12.2  nompi_h2386368_100       conda-forge        4MB
  + python_abi                       3.10  2_cp310                  conda-forge        4kB
  + markupsafe                      2.1.1  py310h5764c6d_2          conda-forge       23kB
  + multidict                       6.0.2  py310h5764c6d_2          conda-forge       53kB
  + frozenlist                      1.3.3  py310h5764c6d_0          conda-forge       45kB
  + tensorboard-data-server         0.6.0  py310h597c629_3          conda-forge        3MB
  + cffi                           1.15.1  py310h255011f_2          conda-forge      237kB
  + wrapt                          1.14.1  py310h5764c6d_1          conda-forge     Cached
  + protobuf                       4.21.9  py310hd8f1fbe_0          conda-forge      349kB
  + grpcio                         1.47.1  py310h5b20944_7          conda-forge     Cached
  + numpy                          1.23.4  py310h53a5b5f_1          conda-forge        7MB
  + yarl                            1.8.1  py310h5764c6d_0          conda-forge       93kB
  + cryptography                   38.0.3  py310h597c629_0          conda-forge        2MB
  + brotlipy                        0.7.0  py310h5764c6d_1005       conda-forge     Cached
  + scipy                           1.9.3  py310hdfbd76f_2          conda-forge       27MB
  + h5py                            3.7.0  nompi_py310h416281c_102  conda-forge        1MB
  + htslib                           1.17  h6bc39ce_1               bioconda        Cached
  + pyabpoa                         1.5.2  py310h1af8fb7_1          bioconda         210kB
  + python-edlib                    1.3.9  py310h84f13bb_8          bioconda          84kB
  + pyspoa                          0.2.1  py310ha025fb0_3          bioconda         133kB
  + pysam                          0.21.0  py310hff46b53_0          bioconda        Cached
  + mappy                            2.28  py310h1af8fb7_2          bioconda         177kB
  + parasail-python                 1.3.4  py310hdf79db3_2          bioconda           3MB
  + samtools                         1.18  hd87286a_0               bioconda        Cached
  + bcftools                         1.17  h3cc50cf_1               bioconda        Cached
  + werkzeug                        2.2.2  pyhd8ed1ab_0             conda-forge     Cached
  + aiosignal                       1.3.1  pyhd8ed1ab_0             conda-forge     Cached
  + opt_einsum                      3.3.0  pyhd8ed1ab_1             conda-forge     Cached
  + oauthlib                        3.2.2  pyhd8ed1ab_0             conda-forge     Cached
  + pyopenssl                      22.1.0  pyhd8ed1ab_0             conda-forge      125kB
  + keras-preprocessing             1.1.2  pyhd8ed1ab_0             conda-forge     Cached
  + urllib3                       1.26.11  pyhd8ed1ab_0             conda-forge      104kB
  + requests                       2.28.1  pyhd8ed1ab_1             conda-forge       55kB
  + requests-oauthlib               1.3.1  pyhd8ed1ab_0             conda-forge     Cached
  + ont-fast5-api                   4.1.3  pyhdfd78af_0             bioconda        Cached
  + aiohttp                         3.8.3  py310h5764c6d_1          conda-forge      459kB
  + google-auth                    2.14.1  pyh1a96a4e_0             conda-forge       96kB
  + google-auth-oauthlib            0.4.6  pyhd8ed1ab_0             conda-forge     Cached
  + tensorboard                    2.10.1  pyhd8ed1ab_0             conda-forge     Cached
  + tensorflow-base                2.10.0  cuda112py310hf679b68_0   conda-forge      420MB
  + tensorflow-estimator           2.10.0  cuda112py310h2fa73eb_0   conda-forge      638kB
  + tensorflow                     2.10.0  cuda112py310he87a039_0   conda-forge       30kB
  + medaka                         1.11.3  py310h87e71ce_0          bioconda        Cached

Environment (if you do not have a GPU, write No GPU):

• Installation method: conda/mamba
• OS: Ubuntu 22.04.4 LTS
• medaka version (can be found by running medaka --version): medaka 1.11.3

[cjw85]

I would imagine this is a conda channel order issue as your log suggests that medaka is being pulled from bioconda not the nanoporetech channel.