How to annotate bedmethyl file with cpg name instead of chr name and position and How can I find the pvalue for association of the cpg with the phenotype?

[ralanany]

No description provided.

[ArtRand]

Hello @ralanany,

Are you looking to join the chrom name, start, stop coordinates with a table of CpG "names"? Modkit doesn't have that exact functionality, but most dataframe and spreadsheet programs should be able to handle it. We're actively working on "phenotype" scores, but I don't have a solution for you right now.