New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Error: no Snakefile found #12

Open

dieunelderilus opened this issue Jul 28, 2021 · 1 comment

dieunelderilus commented Jul 28, 2021 •

edited

Loading

Hello- I am getting a strange error when trying to run snakemake >

Command line used:
snakemake -j 30 reads --config input_fastq=barcode01/ reference_fasta=cds.fa

error message:
Error: no Snakefile found, tried Snakefile, snakefile, workflow/Snakefile, workflow/snakefile.

Please any help?

Cheers,
~DD

The text was updated successfully, but these errors were encountered:

rob234king commented Jul 4, 2022

if run from the folder location of the installation then it will find the snakefile and put the output into the same folder too.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment