diff --git a/tests/nextflow.config b/tests/nextflow.config index 4817fd6d..2f029103 100644 --- a/tests/nextflow.config +++ b/tests/nextflow.config @@ -31,7 +31,10 @@ params { // Kraken DB - https://benlangmead.github.io/aws-indexes/k2 kraken_db = "https://genome-idx.s3.amazonaws.com/kraken/k2_viral_20240904.tar.gz" // Path to tarball containing Kraken reference DB blast_db_name = "nt_others" - ncbi_viral_params = "--section refseq --assembly-level complete" + + // Can't do Circovirus, Anellovirus + // Works Betacoronavirus + ncbi_viral_params = "--section refseq --assembly-level complete --genera 'Rhinovirus'" // Other input values virus_taxid = "10239"