From b38b93d28f52a2ec05fe35d5af4f299a4620afa7 Mon Sep 17 00:00:00 2001 From: simonleandergrimm Date: Mon, 9 Dec 2024 00:53:26 +0000 Subject: [PATCH] Updated comments in main.nf to represent the posiblity of not not alaysing read pairs! --- subworkflows/local/qc/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/subworkflows/local/qc/main.nf b/subworkflows/local/qc/main.nf index 2c4b89a..8823136 100644 --- a/subworkflows/local/qc/main.nf +++ b/subworkflows/local/qc/main.nf @@ -22,11 +22,11 @@ workflow QC { stage_label single_end main: - // 1. Run FASTQC on each pair of read files + // 1. Run FASTQC on each read file / pair of read files fastqc_ch = FASTQC_LABELED(reads, fastqc_cpus, fastqc_mem) - // 2. Extract data with MultiQC for each pair of read files + // 2. Extract data with MultiQC for each read file / pair of read files multiqc_ch = MULTIQC_LABELED(stage_label, fastqc_ch.zip) - // 3. Summarize MultiQC information for each pair of read files + // 3. Summarize MultiQC information for each read file / pair of read files process_ch = SUMMARIZE_MULTIQC_PAIR(multiqc_ch.data, single_end) // 4. Collate MultiQC outputs multiqc_basic_ch = process_ch.map{ it[0] }.collect().ifEmpty([])