diff --git a/src/fprime_gds/executables/cli.py b/src/fprime_gds/executables/cli.py
index ccb0b4f6..fc8118a5 100644
--- a/src/fprime_gds/executables/cli.py
+++ b/src/fprime_gds/executables/cli.py
@@ -541,6 +541,14 @@ def get_arguments(self) -> Dict[Tuple[str, ...], Dict[str, Any]]:
                 "required": False,
                 "type": str,
                 "help": "Directory to store uplink and downlink files. Default: %(default)s",
+            },
+            ("--remote-sequence-directory",): {
+                "dest": "remote_sequence_directory",
+                "action": "store",
+                "default": "/seq",
+                "required": False,
+                "type": str,
+                "help": "Directory to save command sequence binaries, on the remote FSW. Default: %(default)s",
             }
         }
 
diff --git a/src/fprime_gds/flask/app.py b/src/fprime_gds/flask/app.py
index 82cdcd31..4be06db7 100644
--- a/src/fprime_gds/flask/app.py
+++ b/src/fprime_gds/flask/app.py
@@ -148,7 +148,7 @@ def construct_app():
             args_ns.dictionary,
             pipeline.up_store,
             pipeline.files.uplinker,
-            app.config["REMOTE_SEQ_DIRECTORY"],
+            args_ns.remote_sequence_directory,
         ],
     )
     api.add_resource(
diff --git a/src/fprime_gds/flask/default_settings.py b/src/fprime_gds/flask/default_settings.py
index b1aea337..1d2cca0a 100644
--- a/src/fprime_gds/flask/default_settings.py
+++ b/src/fprime_gds/flask/default_settings.py
@@ -14,7 +14,6 @@
 
 SERVE_LOGS = os.environ.get("SERVE_LOGS", "YES") == "YES"
 
-REMOTE_SEQ_DIRECTORY = "/seq"
 MAX_CONTENT_LENGTH = 32 * 1024 * 1024  # Max length of request is 32MiB