added feature_plot to the plotting options

nataliacp · Nov 3, 2022 · 4a2f2a3 · 4a2f2a3
1 parent 95f73ca
commit 4a2f2a3
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Showing 4 changed files with 218 additions and 97 deletions.
diff --git a/sbayes/config/config.py b/sbayes/config/config.py
@@ -395,7 +395,8 @@ def from_config_file(
         with open(path, "r") as f:
             path_str = str(path).lower()
             if path_str.endswith(".yaml"):
-                config_dict = yaml.load(f, Loader=yaml.Loader)
+                yaml_loader = yaml.YAML(typ='safe')
+                config_dict = yaml_loader.load(f)
             else:
                 config_dict = json.load(f)
 

diff --git a/sbayes/config/default_config_plot.json b/sbayes/config/default_config_plot.json
@@ -127,8 +127,8 @@
 			"labels": {
 				"add": true,
 				"names": [
-					"U",
 					"C",
+					"U",
 					"I"
 				],
 				"font_size": 6
@@ -178,6 +178,34 @@
 			"n_columns": 5
 		}
 	},
+	"feature_plot": {
+		"legend": {
+			"labels": {
+				"add": true,
+				"font_size": 8,
+				"names": [
+					"contact",
+					"universal",
+					"inheritance"
+				]
+			},
+			"title": {
+				"add": true,
+				"font_size": 6,
+				"position": [
+					0,
+					1
+				]
+			}
+		},
+		"output": {
+			"width_subplot": 3,
+			"height_subplot": 3,
+			"format": "pdf",
+			"resolution": 300,
+			"n_columns": 5
+		}
+	},
 	"dic_plot": {
 		"content": {
 			"model": [],