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GenResAtoms.py should write a model_detail.dat file like v1 probe_freq_2pdb.py #16

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Jmller56 opened this issue Jun 1, 2022 · 3 comments

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@Jmller56
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Jmller56 commented Jun 1, 2022

The model_detail.dat file is very useful and should be written in v2.

@natedey
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natedey commented Sep 20, 2022

Have we abandoned model_detail?

@tsuhagia
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tsuhagia commented Sep 20, 2022

That was written by probe_freq_2pdb.py in V1, that script is abandoned, best idea would be fit in rinrus_trim2_pdb.py since it is used by all type of interaction type in RINRUS.

@natedey
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natedey commented Sep 21, 2022

Yep, but I liked how the model progression was shown in model_detail and wonder if we should bring it back. Probably we abandoned it because V2 adds SC and MC individually and we didn't discuss how that could be put into an improved model_detail output.
Maybe it would be more useful if it showed all the specific fragments added in each subsequent model? Like
"23:MC + 22:CAP"
if we added the res 23 main chain, but also a chunk of residue 22 to retain the amino chemistry.

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