- move general purpose functions to nat. See #50.
prune_twigs
distal_to
stitch_neuron
stitch_neurons
tpsreg
plot3d.ngraph
- switch repo to natverse github organisation
- new
prune_twigs()
function that removes twigs less than a threshold length. Useful thing to do as part of preparingdotprops()
objects fornblast()
. - Fix strange arrows in
plot3d.ngraph()
(#45) - Allow
open_fafb()
to specify a different CATMAID server (including via acatmaid_connection()
object) (#44) - Teach
nblast_fafb()
to prune twigs by default - fix hitherto silent bugs revealed by R 3.6
- teach
open_fafb()
to make many URLs at once e.g. for results of tagged_details (#41)
- add
plot3d.ngraph()
(shows directed graph in 3d) - fix
simplify_neuron()
when spine has 1 branch only (#40) - vignette tweaks
- teach
simplify_neuron()
to handle the inverse as well (#38) - change IVLP -> WED in FAFBNP surfaces as well as FAFB14NP (#35)
- teach fetchn_fafb to work even if FAFB is given as the reference brain (#39)
- teach
simplify_neuron()
to handle arbitrary number of branch points (#37) - minor doc fixes
- teach
distal_to()
to handle multiple input nodes - add
simplify_neuron function()
to make neuron with just one branchpoint - fix
summarise_contributions()
for 'synapses' (#34) - change IVLP -> WED in FAFBNP surfaces (#35)
- fix
stitch_neurons()
for latest nat 1.9 prerelease (#36)
- switch to FAFB14 as the default EM assembly
- provide default objects (FAFB, FAFB.surf, FAFBNP.surf) that will always point to current assembly.
- fix bug in
distal_to()
(#31) - doc improvements for
distal_to()
- update to 170303_ELM_landmarks_v14 landmarks (including transforming surfaces)
- first version of
unspike()
function - new vignette - making meshes programmatically
- insist on nat >= 1.8.8
fetchn_fafb()
/nblast_fafb()
can take pre-downloaded neuronlist- teach
unspike()
to keep connectors/soma (#29)
- Add functions to summarise tracer effort
- switch FAFB13-JFRC2013 transform to 170211_new_ELM_landmarks_v7.csv (71 landmarks more evenly spaced on both sides of the brain)
- update FAFB13 and FAFB13NP surface objects accordingly
- fix
open_fafb()
after change in stack id handling - add landmarks vignette
- make
nblast_fafb()
parallelised by default - give
open_fafb()
arguments for selecting neuron/nodes (#24) - add FAFB13 brain and neuropil surface objects
- complete switch to FAFB13 assembly (vignettes etc)
- fix
open_fafb()
for v13 (#23)
- teach
nblast_fafb()
to cope with db length <100 (#22)
- switch to FAFB13 as default template brain
- much new functionality including transforming between template brains via
xform_brain()
nblast_fafb()
for searches
- first version