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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(add_Label,neuron)
S3method(add_Label,neuronlist)
S3method(add_field,neuron)
S3method(add_field,neuronlist)
S3method(arbour_cable,neuprintneuron)
S3method(arbour_cable,neuron)
S3method(arbour_cable,neuronlist)
S3method(axonic_cable,neuprintneuron)
S3method(axonic_cable,neuron)
S3method(axonic_cable,neuronlist)
S3method(axonic_points,neuron)
S3method(axonic_points,neuronlist)
S3method(dendritic_cable,neuprintneuron)
S3method(dendritic_cable,neuron)
S3method(dendritic_cable,neuronlist)
S3method(dendritic_points,neuron)
S3method(dendritic_points,neuronlist)
S3method(flow_centrality,neuron)
S3method(flow_centrality,neuronlist)
S3method(flywire_reroot,neuron)
S3method(flywire_reroot,neuronlist)
S3method(geodesic_distance,neuron)
S3method(geodesic_distance,neuronlist)
S3method(hemibrain_clean_skeleton,neuron)
S3method(hemibrain_clean_skeleton,neuronlist)
S3method(hemibrain_connectivity_similarity,matrix)
S3method(hemibrain_connectivity_similarity,numeric)
S3method(hemibrain_flow_centrality,neuron)
S3method(hemibrain_flow_centrality,neuronlist)
S3method(hemibrain_prune_online,neuron)
S3method(hemibrain_prune_online,neuronlist)
S3method(hemibrain_reroot,neuron)
S3method(hemibrain_reroot,neuronlist)
S3method(hemibrain_seetags,neuron)
S3method(hemibrain_seetags,neuronlist)
S3method(hemibrain_settags,neuron)
S3method(hemibrain_settags,neuronlist)
S3method(hemibrain_use_splitpoints,neuron)
S3method(hemibrain_use_splitpoints,neuronlist)
S3method(manually_assign_labels,neuron)
S3method(manually_assign_labels,neuronlist)
S3method(mixed_points,neuron)
S3method(mixed_points,neuronlist)
S3method(primary_branchpoint,neuron)
S3method(primary_branchpoint,neuronlist)
S3method(primary_dendrite_cable,neuron)
S3method(primary_dendrite_cable,neuronlist)
S3method(primary_dendrite_points,neuron)
S3method(primary_dendrite_points,neuronlist)
S3method(primary_neurite,catmaidneuron)
S3method(primary_neurite,neuprintneuron)
S3method(primary_neurite,neuron)
S3method(primary_neurite,neuronlist)
S3method(primary_neurite_cable,neuron)
S3method(primary_neurite_cable,neuronlist)
S3method(primary_neurite_points,neuron)
S3method(primary_neurite_points,neuronlist)
S3method(remove_bad_synapses,neuron)
S3method(remove_bad_synapses,neuronlist)
S3method(scale_neurons,neuron)
S3method(scale_neurons,neuronlist)
S3method(soma_side,neuron)
S3method(soma_side,neuronlist)
S3method(synapse_side_index,neuron)
S3method(synapse_side_index,neuronlist)
S3method(tract_cable,neuron)
S3method(tract_cable,neuronlist)
S3method(unsure_cable,neuprintneuron)
S3method(unsure_cable,neuron)
S3method(unsure_cable,neuronlist)
export("%>%")
export("%do%")
export("%dopar%")
export(LR_matching)
export(add_Label)
export(add_field)
export(add_field_seq)
export(arbour_cable)
export(axonal_endings)
export(axonic_cable)
export(axonic_endings)
export(axonic_points)
export(class2ids)
export(dendritic_cable)
export(dendritic_endings)
export(dendritic_points)
export(fafb_hemibrain_annotate)
export(fafb_matching)
export(fafb_matching_rewrite)
export(fafb_set_hemilineage)
export(fafb_set_transmitter)
export(flow_centrality)
export(flycircuit_matching_rewrite)
export(flycircuit_neurons)
export(flywire_annotation_csv)
export(flywire_annotations_for_synapses)
export(flywire_ans)
export(flywire_basics)
export(flywire_connections)
export(flywire_contributions)
export(flywire_deploy_workflows)
export(flywire_dns)
export(flywire_elist)
export(flywire_failed)
export(flywire_gradient_scene)
export(flywire_hemibrain_scene)
export(flywire_ids)
export(flywire_ids_update)
export(flywire_in)
export(flywire_matching_gsheet_rewrite)
export(flywire_meta)
export(flywire_neurons)
export(flywire_request)
export(flywire_reroot)
export(flywire_synapse_simplify)
export(flywire_synapses)
export(flywire_tracing_sheet)
export(flywire_tracing_sheets)
export(flywire_tracing_standardise)
export(flywire_tracing_update)
export(flywire_verified_synapses)
export(geodesic_distance)
export(glomerulus)
export(grouped_adjacency)
export(hemibrain_adjust_saved_somas)
export(hemibrain_adjust_saved_split)
export(hemibrain_blender_colors)
export(hemibrain_blender_colours)
export(hemibrain_bright_colors)
export(hemibrain_bright_colour_ramp)
export(hemibrain_bright_colours)
export(hemibrain_carryover_tags)
export(hemibrain_cbf)
export(hemibrain_clean_skeleton)
export(hemibrain_colors)
export(hemibrain_colour_ramp)
export(hemibrain_colours)
export(hemibrain_compartment_metrics)
export(hemibrain_connections)
export(hemibrain_connectivity_similarity)
export(hemibrain_connectivity_similarity_distance)
export(hemibrain_connectivity_similarity_matrix)
export(hemibrain_correctsoma)
export(hemibrain_cut)
export(hemibrain_download_neurons)
export(hemibrain_elist)
export(hemibrain_extract_compartment_edgelist)
export(hemibrain_extract_connections)
export(hemibrain_extract_synapses)
export(hemibrain_fig_colors)
export(hemibrain_fig_colours)
export(hemibrain_flow_centrality)
export(hemibrain_get_meta)
export(hemibrain_matches)
export(hemibrain_matching)
export(hemibrain_matching_add)
export(hemibrain_matching_rewrite)
export(hemibrain_matching_transfers)
export(hemibrain_meta)
export(hemibrain_multi3d)
export(hemibrain_nblast)
export(hemibrain_neuron_bodyids)
export(hemibrain_neuron_meshes)
export(hemibrain_neurons)
export(hemibrain_overlap_locality)
export(hemibrain_prune_online)
export(hemibrain_read_neurons)
export(hemibrain_reroot)
export(hemibrain_roi_meshes)
export(hemibrain_seetags)
export(hemibrain_settags)
export(hemibrain_skeleton_check)
export(hemibrain_splitpoints)
export(hemibrain_synapses)
export(hemibrain_task_update)
export(hemibrain_type_plot)
export(hemibrain_use_splitpoints)
export(hemibrain_view)
export(hemibrainr_rclone)
export(hemibrainr_rclone_unmount)
export(hemibrainr_set_drive)
export(hemibrainr_team_drive)
export(lineage_clones)
export(lineage_converter)
export(lm_lhns)
export(lm_matches)
export(lm_matching)
export(manually_assign_labels)
export(matches_update)
export(metadata_add_tags)
export(mixed_points)
export(nlscan_split)
export(plot3d_somas)
export(plot3d_split)
export(plot_inspirobot)
export(primary_branchpoint)
export(primary_dendrite_cable)
export(primary_dendrite_endings)
export(primary_dendrite_points)
export(primary_neurite)
export(primary_neurite_cable)
export(primary_neurite_endings)
export(primary_neurite_points)
export(progress_natprogress)
export(prune_vertices.neuprintneuron)
export(randomwords)
export(remove_bad_synapses)
export(scale_neurons)
export(soma_side)
export(standard_compartments)
export(standard_lineages)
export(standard_statuses)
export(standard_transmitters)
export(standard_workflow)
export(standardise)
export(synapse_side_index)
export(tract_cable)
export(unsure_cable)
import(fafbseg)
importFrom(dplyr,case_when)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,select)
importFrom(foreach,"%do%")
importFrom(foreach,"%dopar%")
importFrom(googledrive,as_id)
importFrom(googledrive,drive_ls)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rainbow)
importFrom(httr,GET)
importFrom(httr,content)
importFrom(httr,status_code)
importFrom(jpeg,readJPEG)
importFrom(magrittr,"%>%")
importFrom(nat,as.neuron)
importFrom(nat,as.neuronlist)
importFrom(nat,as.ngraph)
importFrom(nat,endpoints)
importFrom(nat,is.neuron)
importFrom(nat,is.neuronlist)
importFrom(nat,neuronlist)
importFrom(nat,nlapply)
importFrom(nat,nopen3d)
importFrom(nat,progress_natprogress)
importFrom(nat,prune_vertices)
importFrom(nat,xyzmatrix)
importFrom(nat.templatebrains,regtemplate)
importFrom(nat.templatebrains,xform_brain)
importFrom(neuprintr,neuprint_fetch_custom)
importFrom(neuprintr,neuprint_get_adjacency_matrix)
importFrom(neuprintr,neuprint_get_meta)
importFrom(neuprintr,neuprint_ids)
importFrom(png,writePNG)
importFrom(rgl,clear3d)
importFrom(rgl,legend3d)
importFrom(rgl,plot3d)
importFrom(rgl,points3d)
importFrom(rgl,spheres3d)
importFrom(rlang,.data)
importFrom(stats,ave)
importFrom(stats,dist)
importFrom(stats,na.omit)
importFrom(stats,offset)
importFrom(stats,sd)
importFrom(utils,download.file)
importFrom(utils,installed.packages)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)