From b20fa3ff37ae9c646188dcb6fcb118ea61efaaee Mon Sep 17 00:00:00 2001 From: devonleadman <98187057+devonleadman@users.noreply.github.com> Date: Fri, 21 Jun 2024 10:22:10 -0400 Subject: [PATCH] get_node_counts edit (#67) * Grant Pipeline-New GARD Mapping Process * Change get_node_counts --------- Co-authored-by: Devon Joseph Leadman --- RDAS_GARD/methods.py | 2 +- RDAS_PAKG/update.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/RDAS_GARD/methods.py b/RDAS_GARD/methods.py index 1adc4fb..3fe5280 100755 --- a/RDAS_GARD/methods.py +++ b/RDAS_GARD/methods.py @@ -384,7 +384,7 @@ def populate_node_counts(db,data,prop_name): res1 = db.run('MATCH (x:GARD)--(y:Phenotype) WITH COUNT(DISTINCT y) AS cnt,x SET x.COUNT_PHENOTYPES = cnt').data() res2 = db.run('MATCH (x:GARD)--(y:Gene) WITH COUNT(DISTINCT y) AS cnt,x SET x.COUNT_GENES = cnt').data() - res3 = ct_db.run('MATCH (x:GARD)--(y:Annotation)--(z:Condition)--(ct:ClinicalTrial) WITH COUNT(DISTINCT ct) AS cnt,x RETURN cnt AS cnt,x.GardId AS gard_id').data() + res3 = ct_db.run('MATCH (x:GARD)--(y:ConditionAnnotation)--(z:Condition)--(ct:ClinicalTrial) WITH COUNT(DISTINCT ct) AS cnt,x RETURN cnt AS cnt,x.GardId AS gard_id').data() res4 = pm_db.run('MATCH (x:GARD)--(y:Article) WITH COUNT(DISTINCT y) AS cnt,x RETURN cnt AS cnt, x.GardId AS gard_id').data() res5 = gnt_db.run('MATCH (x:GARD)--(y:Project)--(z:CoreProject) WITH COUNT(DISTINCT z) AS cnt,x RETURN cnt AS cnt, x.GardId as gard_id').data() diff --git a/RDAS_PAKG/update.py b/RDAS_PAKG/update.py index a7df451..a0290bd 100644 --- a/RDAS_PAKG/update.py +++ b/RDAS_PAKG/update.py @@ -25,5 +25,5 @@ def main (update_from=False, update_to=False): RDAS_PAKG.init.main(update_from=update_from, update_to=update_to) -main() #TEST +#main() #TEST #get_node_counts()