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At the step: pathwaydfids <- getPathwayFromAnalyte(db = rampDB, c("ensembl:ENSG00000135679", "hmdb:HMDB0000064", "hmdb:HMDB0000148", "ensembl:ENSG00000141510")) datatable(pathwaydfids)
[1] "Starting getPathwayFromAnalyte()" [1] "Working on ID List..." [1] "finished getPathwayFromAnalyte()" [1] "Found 386 associated pathways."
I only get 386 entries, not the "Found 866 associated pathways"
I get Kegg: 10/32. Reactome: 173/476 wiki: 195/358
Is it an issue of limitation of data taken?
RaMP-DB version 2.5.4
thanks
The text was updated successfully, but these errors were encountered:
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At the step:
pathwaydfids <- getPathwayFromAnalyte(db = rampDB, c("ensembl:ENSG00000135679", "hmdb:HMDB0000064",
"hmdb:HMDB0000148", "ensembl:ENSG00000141510"))
datatable(pathwaydfids)
[1] "Starting getPathwayFromAnalyte()"
[1] "Working on ID List..."
[1] "finished getPathwayFromAnalyte()"
[1] "Found 386 associated pathways."
I only get 386 entries, not the "Found 866 associated pathways"
I get
Kegg: 10/32.
Reactome: 173/476
wiki: 195/358
Is it an issue of limitation of data taken?
RaMP-DB version 2.5.4
thanks
The text was updated successfully, but these errors were encountered: