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Not getting the same results as the vignette #150

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SaraBSalazar opened this issue Dec 3, 2024 · 0 comments
Open

Not getting the same results as the vignette #150

SaraBSalazar opened this issue Dec 3, 2024 · 0 comments

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@SaraBSalazar
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SaraBSalazar commented Dec 3, 2024

At the step:
pathwaydfids <- getPathwayFromAnalyte(db = rampDB, c("ensembl:ENSG00000135679", "hmdb:HMDB0000064",
"hmdb:HMDB0000148", "ensembl:ENSG00000141510"))
datatable(pathwaydfids)

[1] "Starting getPathwayFromAnalyte()"
[1] "Working on ID List..."
[1] "finished getPathwayFromAnalyte()"
[1] "Found 386 associated pathways."

I only get 386 entries, not the "Found 866 associated pathways"

I get
Kegg: 10/32.
Reactome: 173/476
wiki: 195/358

Is it an issue of limitation of data taken?

RaMP-DB version 2.5.4

thanks

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