From 6c7d2c76512620a3a91f4319cd82f740f1aeee7f Mon Sep 17 00:00:00 2001
From: Mitch Miller <mitch.miller@thinkscience.us>
Date: Tue, 25 Jun 2024 18:45:00 -0400
Subject: [PATCH] updated dependencies to remove security risks

---
 pom.xml                                       |  6 ++--
 .../cdk/writer/AbstractMdlWriterFactory.java  | 32 +++++--------------
 2 files changed, 11 insertions(+), 27 deletions(-)

diff --git a/pom.xml b/pom.xml
index 82e6e98..9dfcd23 100644
--- a/pom.xml
+++ b/pom.xml
@@ -6,7 +6,7 @@
 
     <groupId>gov.nih.ncats</groupId>
     <artifactId>molwitch-cdk</artifactId>
-    <version>1.0.18</version>
+    <version>1.0.19</version>
     <name>molwitch-cdk</name>
 
     <url>https://github.com/ncats/molwitch-cdk/</url>
@@ -247,7 +247,7 @@
         <dependency>
             <groupId>gov.nih.ncats</groupId>
             <artifactId>smsd-core</artifactId>
-            <version>2.2.3</version>
+            <version>2.2.4</version>
             <exclusions>
                 <exclusion>
                     <groupId>org.apache.logging.log4j</groupId>
@@ -258,7 +258,7 @@
         <dependency>
             <groupId>gov.nih.ncats</groupId>
             <artifactId>smsd-exec</artifactId>
-            <version>2.2.3</version>
+            <version>2.2.4</version>
         </dependency>
     </dependencies>
 
diff --git a/src/main/java/gov/nih/ncats/molwitch/cdk/writer/AbstractMdlWriterFactory.java b/src/main/java/gov/nih/ncats/molwitch/cdk/writer/AbstractMdlWriterFactory.java
index 289f95f..29c5d96 100644
--- a/src/main/java/gov/nih/ncats/molwitch/cdk/writer/AbstractMdlWriterFactory.java
+++ b/src/main/java/gov/nih/ncats/molwitch/cdk/writer/AbstractMdlWriterFactory.java
@@ -21,35 +21,19 @@
 
 package gov.nih.ncats.molwitch.cdk.writer;
 
-import java.io.IOException;
-import java.io.OutputStream;
-import java.util.Arrays;
-import java.util.Properties;
-import java.util.function.Function;
-
-import javax.vecmath.Point2d;
-import javax.vecmath.Point3d;
-
-import gov.nih.ncats.molwitch.cdk.CdkUtil;
-import org.apache.xpath.operations.Bool;
-import org.openscience.cdk.aromaticity.Aromaticity;
-import org.openscience.cdk.aromaticity.ElectronDonation;
-import org.openscience.cdk.exception.CDKException;
-import org.openscience.cdk.graph.Cycles;
-import org.openscience.cdk.interfaces.IAtom;
-import org.openscience.cdk.interfaces.IAtomContainer;
-import org.openscience.cdk.interfaces.IBond;
-import org.openscience.cdk.io.IChemObjectWriter;
-import org.openscience.cdk.io.listener.PropertiesListener;
-
-import gov.nih.ncats.molwitch.io.ChemFormat.AromaticAwareChemFormatWriterSpecification;
 import gov.nih.ncats.molwitch.io.ChemFormat.ChemFormatWriterSpecification;
-import gov.nih.ncats.molwitch.io.ChemFormat.KekulizationEncoding;
 import gov.nih.ncats.molwitch.io.ChemFormat.MolFormatSpecification;
 import gov.nih.ncats.molwitch.io.ChemFormat.MolFormatSpecification.Version;
 import gov.nih.ncats.molwitch.spi.ChemicalWriterImpl;
 import gov.nih.ncats.molwitch.spi.ChemicalWriterImplFactory;
-import org.openscience.cdk.io.setting.IOSetting;
+import org.openscience.cdk.interfaces.IAtomContainer;
+import org.openscience.cdk.io.IChemObjectWriter;
+import org.openscience.cdk.io.listener.PropertiesListener;
+
+import java.io.IOException;
+import java.io.OutputStream;
+import java.util.Properties;
+import java.util.function.Function;
 
 public abstract class AbstractMdlWriterFactory implements ChemicalWriterImplFactory{