From 48cd39e83176895f2be69af5babd54a1193f964f Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Thu, 2 May 2024 11:47:22 -0400
Subject: [PATCH 01/11] Create codeql-sls.yml

---
 .github/workflows/codeql-sls.yml | 54 ++++++++++++++++++++++++++++++++
 1 file changed, 54 insertions(+)
 create mode 100644 .github/workflows/codeql-sls.yml

diff --git a/.github/workflows/codeql-sls.yml b/.github/workflows/codeql-sls.yml
new file mode 100644
index 0000000..a487356
--- /dev/null
+++ b/.github/workflows/codeql-sls.yml
@@ -0,0 +1,54 @@
+# Define the name of the workflow
+name: "CodeQL SLS"
+
+# Define when the workflow should be triggered (on push to a specific branch and pull requests to the master branch)
+on:
+  push:
+    branches:
+      - SLS
+
+# Define the jobs that will be executed as part of the workflow
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: [ncats-awsci-ln-githubrunner-dv-v-01, prod, ncats-aws-devops]
+
+    # Define the matrix strategy for parallel runs with different languages
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ 'javascript-typescript' ]
+
+    steps:
+    # Step 1: Checkout repository
+    - name: Checkout repository
+      uses: actions/checkout@v4
+
+    # Step 2: Initialize CodeQL for scanning
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v3
+      with:
+        languages: ${{ matrix.language }}
+    
+    # Step 3: Autobuild the code.
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v3
+
+    # Step 4: Analyzes the code using CodeQL, with the analysis category based on the matrix language.
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v3
+      with:
+        category: "/language:${{matrix.language}}"
+    
+    # Step 5: Generate Security Report
+    - name: Generate Security Report
+      uses: rsdmike/github-security-report-action@v3.0.4
+      with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+    
+    # Step 6: Uploads artifacts (PDF reports) generated during the workflow to download.
+    - name: Upload Artifacts
+      uses: actions/upload-artifact@v4
+      with: 
+          name: reports
+          path: ./*.pdf

From 60689fa1a9353b764b11aa144004325ee03ac6f4 Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Thu, 2 May 2024 11:50:33 -0400
Subject: [PATCH 02/11] Create synk-zap-sls.yml

---
 .github/workflows/synk-zap-sls.yml | 152 +++++++++++++++++++++++++++++
 1 file changed, 152 insertions(+)
 create mode 100644 .github/workflows/synk-zap-sls.yml

diff --git a/.github/workflows/synk-zap-sls.yml b/.github/workflows/synk-zap-sls.yml
new file mode 100644
index 0000000..44b9755
--- /dev/null
+++ b/.github/workflows/synk-zap-sls.yml
@@ -0,0 +1,152 @@
+# Define the name of the workflow
+name: snyk-zap
+
+# Define when the workflow should be triggered (on push to a specific branch and pull requests to the master branch)
+on:
+  push:
+    branches:
+      - SLS
+  pull_request:
+    branches:
+      - SLS
+  workflow_dispatch:
+
+# Define the jobs that will be executed as part of the workflow 
+jobs:
+  # Job to build and push the ZAP Docker image to Docker Hub
+  Snyk-Docker-Image:
+    runs-on: [ncats-awsci-ln-githubrunner-dv-v-01, prod, ncats-aws-devops]
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+      issues: write
+    
+    outputs:
+      build_version: ${{ steps.get_build_version.outputs.build_version }}
+
+    steps:
+      # Step 1: Checkout repository
+      - name: Checkout code
+        uses: actions/checkout@v4
+      
+      # Step 2: Generate Build Version Number
+      - name: Generate Build Version Number
+        id: GET_BUILD_VERSION
+        run: |
+          # Get the last recorded date from the environment variable
+          LAST_DATE=$(date -d "$LAST_BUILD_DATE" +'%Y-%m-%d' 2>/dev/null || echo "")
+      
+          # Get the current date
+          CURRENT_DATE=$(date +'%Y-%m-%d')
+          echo "Last recorded date: $LAST_DATE"
+          echo "Current date: $CURRENT_DATE"
+      
+          # Check if it's a new day
+          if [ "$LAST_DATE" != "$CURRENT_DATE" ]; then
+            # Reset BUILDS_TODAY to 0 for the new day
+            BUILDS_TODAY=0
+            echo "Resetting BUILDS_TODAY to 0 for the new day"
+          else
+            # Calculate the number of builds today
+            BUILDS_TODAY=$(seq -f v$GITHUB_RUN_NUMBER.%g $(($GITHUB_RUN_NUMBER - 1)) | wc -l)
+            echo "Incrementing BUILDS_TODAY"
+          fi
+    
+          # Store the current date for the next run
+          echo "LAST_BUILD_DATE=$CURRENT_DATE" >> $GITHUB_ENV
+        
+          # Generate the build version with the number of builds today
+          BUILD_VERSION_GENERATED=$(date +v%Y.%m%d.$BUILDS_TODAY)
+          echo "Generated Build Version: $BUILD_VERSION_GENERATED"
+          echo "BUILD_VERSION=$BUILD_VERSION_GENERATED" >> $GITHUB_ENV
+          echo "BUILD=true" >> $GITHUB_ENV
+          echo "::set-output name=build_version::$BUILD_VERSION_GENERATED"
+
+      # Step 3: Login to Dockerhub
+      - name: Login to Dockerhub
+        run: docker login -u "${{ secrets.DKRHUB_NCATSSVCDVOPS_USERNAME }}" -p "${{ secrets.DKRHUB_NCATSSVCDVOPS_TOKEN_WRITE }}"
+    
+      # Step 4: Build a Docker image
+      - name: Build a Docker image
+        run: docker build --no-cache -f ./Dockerfile --build-arg NPM_TOKEN=${{ secrets.NPM_INSTALL_TOKEN }} --build-arg BUILD_VERSION=$BUILD_VERSION -t ncats/smartgraph_frontend:$BUILD_VERSION .
+
+       # Step 5: Run Snyk to check Docker image for vulnerabilities
+      - name: Run Snyk to check Docker image for vulnerabilities
+        continue-on-error: true
+        uses: snyk/actions/docker@master
+        id: docker-image-scan
+        env:
+          SNYK_TOKEN: ${{ secrets.SNYK_CLI }}
+        with:
+          image: ncats/smartgraph_api:$BUILD_VERSION
+          args: --sarif-file-output=snyk.sarif --file=Dockerfile
+      
+      - name: Replace security-severity undefined for license-related findings 
+        run: |
+         sed -i 's/"security-severity": "undefined"/"security-severity": "0"/g' snyk.sarif
+         sed -i 's/"security-severity": "null"/"security-severity": "0"/g' snyk.sarif
+
+      # Step 6: Upload result to GitHub Code Scanning
+      - name: Upload result to GitHub Code Scanning
+        # continue-on-error: true
+        uses: github/codeql-action/upload-sarif@v3
+        with:
+          sarif_file: snyk.sarif 
+
+      # Step 7: Generate Security Report
+      - name: Generate Security Report
+        uses: rsdmike/github-security-report-action@v3.0.4
+        with:
+            token: ${{ secrets.GITHUB_TOKEN }}
+      
+      # Step 8: Uploads artifacts (PDF reports) generated during the workflow to download.
+      - name: Upload Artifacts
+        uses: actions/upload-artifact@v4
+        with: 
+            name: reports
+            path: ./*.pdf
+
+  ZAP-Docker-Scan:
+    needs: Snyk-Docker-Image
+    runs-on: [ncats-awsci-ln-githubrunner-dv-v-01, prod, ncats-aws-devops]
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+      issues: write
+    
+    steps:
+      # Step 1: Get BUILD_VERSION from Snyk-Docker-Image job
+      - name: Get BUILD_VERSION from Snyk-Docker-Image job
+        id: get_runner_ip
+        run: |
+          echo "BUILD_VERSION=${{ needs.Snyk-Docker-Image.outputs.build_version }}" >> $GITHUB_ENV
+          echo "::set-output name=runner_ip::$(hostname -I | cut -d' ' -f1)"
+
+      # Step 2: Add the command to start Docker image on port 4200
+      - name: Start Docker image on port 4200
+        run: docker run -d -p 4200:4200 ncats/smartgraph_frontend:${{ needs.Snyk-Docker-Image.outputs.build_version }}
+      
+      # Step 3: ZAP BASELINE SCAN
+      - name: ZAP base Scan
+        uses: zaproxy/action-baseline@v0.11.0
+        with:
+          target: 'http://${{ steps.get_runner_ip.outputs.runner_ip }}:4200' # ip address of the runner
+          docker_name: 'ghcr.io/zaproxy/zaproxy:stable'
+          token: ${{ secrets.GITHUB_TOKEN }}
+          fail_action: false
+      
+      # Step 4: Create SARIF file from ZAP results
+      - name: Create SARIF file from ZAP results
+        uses: SvanBoxel/zaproxy-to-ghas@main
+
+      # Step 5: Upload SARIF file to GitHub Code Scanning
+      - name: Upload SARIF file
+        uses: github/codeql-action/upload-sarif@v3
+        with:
+          sarif_file: results.sarif
+
+      # Step 6: Stop and remove the Docker container
+      - name: Stop and remove Docker container
+        run: docker stop $(docker ps -q --filter ancestor=ncats/smartgraph_frontend:$BUILD_VERSION) && docker rm $(docker ps -a -q --filter ancestor=ncats/smartgraph_frontend:$BUILD_VERSION) || true

From 167ac4c964733aeb2df43e40a0f430211819e73f Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Fri, 3 May 2024 12:53:59 -0400
Subject: [PATCH 03/11] Update synk-zap-sls.yml

---
 .github/workflows/synk-zap-sls.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/synk-zap-sls.yml b/.github/workflows/synk-zap-sls.yml
index 44b9755..c3b04e7 100644
--- a/.github/workflows/synk-zap-sls.yml
+++ b/.github/workflows/synk-zap-sls.yml
@@ -132,7 +132,7 @@ jobs:
       - name: ZAP base Scan
         uses: zaproxy/action-baseline@v0.11.0
         with:
-          target: 'http://${{ steps.get_runner_ip.outputs.runner_ip }}:4200' # ip address of the runner
+          target: 'http://${{ steps.get_runner_ip.outputs.runner_ip }}:8000' # ip address of the runner
           docker_name: 'ghcr.io/zaproxy/zaproxy:stable'
           token: ${{ secrets.GITHUB_TOKEN }}
           fail_action: false

From e10503a5d121077cf8d81df819d42d5401e74404 Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Fri, 3 May 2024 12:59:08 -0400
Subject: [PATCH 04/11] Update synk-zap-sls.yml

---
 .github/workflows/synk-zap-sls.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/synk-zap-sls.yml b/.github/workflows/synk-zap-sls.yml
index c3b04e7..f68454b 100644
--- a/.github/workflows/synk-zap-sls.yml
+++ b/.github/workflows/synk-zap-sls.yml
@@ -63,9 +63,9 @@ jobs:
           echo "BUILD=true" >> $GITHUB_ENV
           echo "::set-output name=build_version::$BUILD_VERSION_GENERATED"
 
-      # Step 3: Login to Dockerhub
-      - name: Login to Dockerhub
-        run: docker login -u "${{ secrets.DKRHUB_NCATSSVCDVOPS_USERNAME }}" -p "${{ secrets.DKRHUB_NCATSSVCDVOPS_TOKEN_WRITE }}"
+      # # Step 3: Login to Dockerhub
+      # - name: Login to Dockerhub
+      #   run: docker login -u "${{ secrets.DKRHUB_NCATSSVCDVOPS_USERNAME }}" -p "${{ secrets.DKRHUB_NCATSSVCDVOPS_TOKEN_WRITE }}"
     
       # Step 4: Build a Docker image
       - name: Build a Docker image
@@ -104,7 +104,7 @@ jobs:
       - name: Upload Artifacts
         uses: actions/upload-artifact@v4
         with: 
-            name: reports
+            name: snyk-reports
             path: ./*.pdf
 
   ZAP-Docker-Scan:

From 4831f0e4df7c2b67cc00c5a2a1e6202d505bad79 Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Fri, 3 May 2024 13:00:31 -0400
Subject: [PATCH 05/11] Update codeql-sls.yml

---
 .github/workflows/codeql-sls.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql-sls.yml b/.github/workflows/codeql-sls.yml
index a487356..5bba4c4 100644
--- a/.github/workflows/codeql-sls.yml
+++ b/.github/workflows/codeql-sls.yml
@@ -50,5 +50,5 @@ jobs:
     - name: Upload Artifacts
       uses: actions/upload-artifact@v4
       with: 
-          name: reports
+          name: codeql-reports
           path: ./*.pdf

From 974e3495aa459a2b1407a9a2f6303b20903b8cb4 Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Fri, 3 May 2024 13:15:58 -0400
Subject: [PATCH 06/11] Update synk-zap-sls.yml

---
 .github/workflows/synk-zap-sls.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/synk-zap-sls.yml b/.github/workflows/synk-zap-sls.yml
index f68454b..af52fed 100644
--- a/.github/workflows/synk-zap-sls.yml
+++ b/.github/workflows/synk-zap-sls.yml
@@ -79,7 +79,7 @@ jobs:
         env:
           SNYK_TOKEN: ${{ secrets.SNYK_CLI }}
         with:
-          image: ncats/smartgraph_api:$BUILD_VERSION
+          image: ncats/smartgraph_frontend:$BUILD_VERSION
           args: --sarif-file-output=snyk.sarif --file=Dockerfile
       
       - name: Replace security-severity undefined for license-related findings 

From 5d11b3a404ce9c4041847cb76c4a268b27723a7b Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Fri, 3 May 2024 13:24:24 -0400
Subject: [PATCH 07/11] Update synk-zap-sls.yml

---
 .github/workflows/synk-zap-sls.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/synk-zap-sls.yml b/.github/workflows/synk-zap-sls.yml
index af52fed..ea0c98a 100644
--- a/.github/workflows/synk-zap-sls.yml
+++ b/.github/workflows/synk-zap-sls.yml
@@ -132,7 +132,7 @@ jobs:
       - name: ZAP base Scan
         uses: zaproxy/action-baseline@v0.11.0
         with:
-          target: 'http://${{ steps.get_runner_ip.outputs.runner_ip }}:8000' # ip address of the runner
+          target: 'http://${{ steps.get_runner_ip.outputs.runner_ip }}:4201' # ip address of the runner
           docker_name: 'ghcr.io/zaproxy/zaproxy:stable'
           token: ${{ secrets.GITHUB_TOKEN }}
           fail_action: false

From 3da76416d83226498261fbb842507920638a80bb Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Fri, 3 May 2024 13:36:50 -0400
Subject: [PATCH 08/11] Update synk-zap-sls.yml

---
 .github/workflows/synk-zap-sls.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/synk-zap-sls.yml b/.github/workflows/synk-zap-sls.yml
index ea0c98a..b5413fd 100644
--- a/.github/workflows/synk-zap-sls.yml
+++ b/.github/workflows/synk-zap-sls.yml
@@ -125,14 +125,14 @@ jobs:
           echo "::set-output name=runner_ip::$(hostname -I | cut -d' ' -f1)"
 
       # Step 2: Add the command to start Docker image on port 4200
-      - name: Start Docker image on port 4200
-        run: docker run -d -p 4200:4200 ncats/smartgraph_frontend:${{ needs.Snyk-Docker-Image.outputs.build_version }}
+      - name: Start Docker image on port 80
+        run: docker run -d -p 80:80 ncats/smartgraph_frontend:${{ needs.Snyk-Docker-Image.outputs.build_version }}
       
       # Step 3: ZAP BASELINE SCAN
       - name: ZAP base Scan
         uses: zaproxy/action-baseline@v0.11.0
         with:
-          target: 'http://${{ steps.get_runner_ip.outputs.runner_ip }}:4201' # ip address of the runner
+          target: 'http://${{ steps.get_runner_ip.outputs.runner_ip }}:8023' # ip address of the runner
           docker_name: 'ghcr.io/zaproxy/zaproxy:stable'
           token: ${{ secrets.GITHUB_TOKEN }}
           fail_action: false

From 8e6c0b70608bdf80865e5a2212d1bfa16300d980 Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Fri, 3 May 2024 13:48:57 -0400
Subject: [PATCH 09/11] Update synk-zap-sls.yml

---
 .github/workflows/synk-zap-sls.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/synk-zap-sls.yml b/.github/workflows/synk-zap-sls.yml
index b5413fd..a80c055 100644
--- a/.github/workflows/synk-zap-sls.yml
+++ b/.github/workflows/synk-zap-sls.yml
@@ -125,14 +125,14 @@ jobs:
           echo "::set-output name=runner_ip::$(hostname -I | cut -d' ' -f1)"
 
       # Step 2: Add the command to start Docker image on port 4200
-      - name: Start Docker image on port 80
-        run: docker run -d -p 80:80 ncats/smartgraph_frontend:${{ needs.Snyk-Docker-Image.outputs.build_version }}
+      - name: Start Docker image on port 4200
+        run: docker run -d -p 4200:4200 ncats/smartgraph_frontend:${{ needs.Snyk-Docker-Image.outputs.build_version }}
       
       # Step 3: ZAP BASELINE SCAN
       - name: ZAP base Scan
         uses: zaproxy/action-baseline@v0.11.0
         with:
-          target: 'http://${{ steps.get_runner_ip.outputs.runner_ip }}:8023' # ip address of the runner
+          target: 'http://${{ steps.get_runner_ip.outputs.runner_ip }}:4200' # ip address of the runner
           docker_name: 'ghcr.io/zaproxy/zaproxy:stable'
           token: ${{ secrets.GITHUB_TOKEN }}
           fail_action: false

From 32f0ca2e977e5138dec4bc9b35a0c5449b0281d9 Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Fri, 3 May 2024 13:59:06 -0400
Subject: [PATCH 10/11] Update codeql-sls.yml

---
 .github/workflows/codeql-sls.yml | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql-sls.yml b/.github/workflows/codeql-sls.yml
index 5bba4c4..b1215fc 100644
--- a/.github/workflows/codeql-sls.yml
+++ b/.github/workflows/codeql-sls.yml
@@ -5,8 +5,12 @@ name: "CodeQL SLS"
 on:
   push:
     branches:
-      - SLS
-
+      - development
+  pull_request:
+    branches:
+      - development
+  workflow_dispatch:
+  
 # Define the jobs that will be executed as part of the workflow
 jobs:
   analyze:

From a7450357fce44da7ab3d559af34d56ee16a222ff Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Fri, 3 May 2024 13:59:27 -0400
Subject: [PATCH 11/11] Update synk-zap-sls.yml

---
 .github/workflows/synk-zap-sls.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/synk-zap-sls.yml b/.github/workflows/synk-zap-sls.yml
index a80c055..6919139 100644
--- a/.github/workflows/synk-zap-sls.yml
+++ b/.github/workflows/synk-zap-sls.yml
@@ -5,10 +5,10 @@ name: snyk-zap
 on:
   push:
     branches:
-      - SLS
+      - development
   pull_request:
     branches:
-      - SLS
+      - development
   workflow_dispatch:
 
 # Define the jobs that will be executed as part of the workflow