From 236992d55da83684e77ab3ec3937ccf679bc988e Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Thu, 14 Nov 2024 10:42:36 -0500
Subject: [PATCH 1/4] Create codeql.yml

---
 .github/workflows/codeql.yml | 57 ++++++++++++++++++++++++++++++++++++
 1 file changed, 57 insertions(+)
 create mode 100644 .github/workflows/codeql.yml

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
new file mode 100644
index 0000000..57bb803
--- /dev/null
+++ b/.github/workflows/codeql.yml
@@ -0,0 +1,57 @@
+# Define the name of the workflow
+name: "CodeQL-Advanced"
+
+# Define when the workflow should be triggered (on push to a specific branch and pull requests to the master branch)
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+# Define the jobs that will be executed as part of the workflow
+jobs:
+  analyze:
+    name: Analyze
+    runs-on:
+      group: ncats-awsci-runners
+
+    # Define the matrix strategy for parallel runs with different languages
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ 'javascript-typescript' ]
+
+    steps:
+    # Step 1: Checkout repository
+    - name: Checkout repository
+      uses: actions/checkout@v4
+
+    # Step 2: Initialize CodeQL for scanning
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v3
+      with:
+        languages: ${{ matrix.language }}
+    
+    # Step 3: Autobuild the code.
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v3
+
+    # Step 4: Analyzes the code using CodeQL, with the analysis category based on the matrix language.
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v3
+      with:
+        category: "/language:${{matrix.language}}"
+    
+    # Step 5: Generate Security Report
+    - name: Generate Security Report
+      uses: rsdmike/github-security-report-action@v3.0.4
+      with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+    
+    # Step 6: Uploads artifacts (PDF reports) generated during the workflow to download.
+    - name: Upload Artifacts
+      uses: actions/upload-artifact@v4
+      with: 
+          name: codeql-reports
+          path: ./*.pdf

From 7e73e293ead450d63edde17c3d46bea7eda6e3dc Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Thu, 14 Nov 2024 10:44:28 -0500
Subject: [PATCH 2/4] Create snyk.yml

---
 .github/workflows/snyk.yml | 86 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 86 insertions(+)
 create mode 100644 .github/workflows/snyk.yml

diff --git a/.github/workflows/snyk.yml b/.github/workflows/snyk.yml
new file mode 100644
index 0000000..63fa11d
--- /dev/null
+++ b/.github/workflows/snyk.yml
@@ -0,0 +1,86 @@
+# Define the name of the workflow
+name: snyk-zap
+
+# Define when the workflow should be triggered (on push to a specific branch and pull requests to the master branch)
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+  workflow_dispatch:
+
+# Define the jobs that will be executed as part of the workflow 
+jobs:
+  # Job to build and push the ZAP Docker image to Docker Hub
+  Snyk-Docker-Image:
+    runs-on:
+      group: ncats-awsci-runners
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+      issues: write
+    
+    outputs:
+      build_version: ${{ steps.get_build_version.outputs.build_version }}
+
+    steps:
+      # Step 1: Checkout repository
+      - name: Checkout code
+        uses: actions/checkout@v4
+      
+      # Step 2: Generate Build Version Number
+      - name: Generate Build Version Number
+        id: GET_BUILD_VERSION
+        run: |
+          # Get the last recorded date from the environment variable
+          LAST_DATE=$(date -d "$LAST_BUILD_DATE" +'%Y-%m-%d' 2>/dev/null || echo "")
+      
+          # Get the current date
+          CURRENT_DATE=$(date +'%Y-%m-%d')
+          echo "Last recorded date: $LAST_DATE"
+          echo "Current date: $CURRENT_DATE"
+      
+          # Check if it's a new day
+          if [ "$LAST_DATE" != "$CURRENT_DATE" ]; then
+            # Reset BUILDS_TODAY to 0 for the new day
+            BUILDS_TODAY=0
+            echo "Resetting BUILDS_TODAY to 0 for the new day"
+          else
+            # Calculate the number of builds today
+            BUILDS_TODAY=$(seq -f v$GITHUB_RUN_NUMBER.%g $(($GITHUB_RUN_NUMBER - 1)) | wc -l)
+            echo "Incrementing BUILDS_TODAY"
+          fi
+    
+          # Store the current date for the next run
+          echo "LAST_BUILD_DATE=$CURRENT_DATE" >> $GITHUB_ENV
+        
+          # Generate the build version with the number of builds today
+          BUILD_VERSION_GENERATED=$(date +v%Y.%m%d.$BUILDS_TODAY)
+          echo "Generated Build Version: $BUILD_VERSION_GENERATED"
+          echo "BUILD_VERSION=$BUILD_VERSION_GENERATED" >> $GITHUB_ENV
+          echo "BUILD=true" >> $GITHUB_ENV
+          echo "::set-output name=build_version::$BUILD_VERSION_GENERATED"
+
+      # # Step 3: Login to Dockerhub
+      # - name: Login to Dockerhub
+      #   run: docker login -u "${{ secrets.DKRHUB_NCATSSVCDVOPS_USERNAME }}" -p "${{ secrets.DKRHUB_NCATSSVCDVOPS_TOKEN_WRITE }}"
+    
+      # Step 4: Build a Docker image
+      - name: Build a Docker image
+        run: docker build --no-cache -f ./Dockerfile --build-arg NPM_TOKEN=${{ secrets.NPM_INSTALL_TOKEN }} --build-arg BUILD_VERSION=$BUILD_VERSION -t ncats/smartgraph_frontend:$BUILD_VERSION .
+
+      # Step 5: Run Snyk to check Docker image for vulnerabilities
+      - name: Run Snyk to check Docker image for vulnerabilities
+        continue-on-error: true
+        uses: snyk/actions/docker@master
+        id: docker-image-scan
+        env:
+          SNYK_TOKEN: ${{ secrets.SNYK_CLI }}
+          ACTIONS_STEP_DEBUG: true
+        with:
+          command: monitor
+          image: ncats/smartgraph_frontend:$BUILD_VERSION
+          args: --file=Dockerfile

From fa24736a2d5d31d53117b99eaed34751baddd851 Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Thu, 14 Nov 2024 10:45:01 -0500
Subject: [PATCH 3/4] Update codeql.yml

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 57bb803..3058212 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -5,10 +5,10 @@ name: "CodeQL-Advanced"
 on:
   push:
     branches:
-      - main
+      - master
   pull_request:
     branches:
-      - main
+      - master
 # Define the jobs that will be executed as part of the workflow
 jobs:
   analyze:

From 18eba8221f7b772560754d255ac89ccff5ccb16c Mon Sep 17 00:00:00 2001
From: venkatadhatri <80774439+venkatadhatri@users.noreply.github.com>
Date: Thu, 14 Nov 2024 12:04:10 -0500
Subject: [PATCH 4/4] Update snyk.yml

---
 .github/workflows/snyk.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/snyk.yml b/.github/workflows/snyk.yml
index 63fa11d..23da014 100644
--- a/.github/workflows/snyk.yml
+++ b/.github/workflows/snyk.yml
@@ -5,10 +5,10 @@ name: snyk-zap
 on:
   push:
     branches:
-      - master
+      - development
   pull_request:
     branches:
-      - master
+      - development
   workflow_dispatch:
 
 # Define the jobs that will be executed as part of the workflow