diff --git a/workflows/Dockerfile b/workflows/Dockerfile index d7a7acc..241e0bc 100644 --- a/workflows/Dockerfile +++ b/workflows/Dockerfile @@ -1,12 +1,13 @@ -FROM openjdk:8-jdk as buildContainer +FROM ubuntu:latest as buildContainer WORKDIR "/opt/stitcher" RUN apt update RUN apt-get update +RUN apt-get install -y openjdk-8-jdk RUN apt-get install sudo RUN apt-get install nano RUN sudo apt-get install graphviz -y -RUN sudo apt-get install zip +RUN sudo apt-get install -y zip RUN apt-get install apt-transport-https curl gnupg -yqq RUN echo "deb https://repo.scala-sbt.org/scalasbt/debian all main" | sudo tee /etc/apt/sources.list.d/sbt.list RUN echo "deb https://repo.scala-sbt.org/scalasbt/debian /" | sudo tee /etc/apt/sources.list.d/sbt_old.list @@ -32,5 +33,6 @@ RUN pip install snakemake RUN pip install pulp==2.7 RUN pip install xlrd +ENV SBT_OPTS="-Dsbt.rootdir=true" CMD export PATH=${HOME}/edirect:${PATH} && bash #CMD snakemake --cores=all