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Orphaned Rancho nodes deserve review / manual curation #133

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southalln opened this issue Jul 23, 2020 · 3 comments
Open

Orphaned Rancho nodes deserve review / manual curation #133

southalln opened this issue Jul 23, 2020 · 3 comments

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@southalln
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Acetyl Ceramide
https://stitcher-dev.ncats.io/api/node/368395

Has markup by Rancho, but lives on its own stitch node at present. Can we prioritize likewise orphans with rich synonym list, lychi L3 links and target annotations for manual review?

@southalln
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source: "03635f758",
id: "ACETYL CERAMIDE",
COMPOUND_QCD: [
"false"
],
CompoundName: [
"ACETYL CERAMIDE"
],
CompoundSynonym: [
"C2 ceramide",
"N-[(2R,3S,4E)-1,3-Dihydroxy-4-octadecen-2-yl]acetamide",
"N-acetylsphingosine",
"C2-ceramide",
"N-(acetyl)-sphing-4-enine",
"C2 Ceramide (d18:1/2:0)",
"N-Acetyl-D-sphingosine"
],
CompoundSmiles: [
"CCCCCCCCCCCCCC=CC@HC@@HNC(C)=O"
],
created: 1595331923568,
ModifiedDateTime: [
"2018-08-16"
],
Targets: [
"eyJQcmltYXJ5UG90ZW5jeVR5cGUiOiJVbmtub3duIiwiUHJpbWFyeVRhcmdldFR5cGUiOiJPdGhlciIsIlByaW1hcnlUYXJnZXRVcmkiOiJodHRwczovL3d3dy5uY2JpLm5sbS5uaWguZ292L3B1Ym1lZC8yNDU2NjE1MyIsIlByaW1hcnlQb3RlbmN5VXJpIjoiVW5rbm93biIsIlByaW1hcnlUYXJnZXRJZCI6Im5lY3Jvc2lzIiwiVGFyZ2V0UGhhcm1hY29sb2d5IjoiQWN0aXZhdG9yIiwiUHJpbWFyeVRhcmdldENvbW1lbnQiOiJDMi1jZXJhbWlkZSBleGVydHMgYW50aS10dW1vciBlZmZlY3RzIGJ5IGluZHVjaW5nIHByb2dyYW1tZWQgYXBvcHRvc2lzIGFuZCBuZWNyb3NpcyIsImlkIjoiNjUzOTNkYTliMCJ9",
"eyJQcmltYXJ5UG90ZW5jeVR5cGUiOiJVbmtub3duIiwiUHJpbWFyeVRhcmdldFR5cGUiOiJPdGhlciIsIlByaW1hcnlUYXJnZXRVcmkiOiJodHRwczovL3d3dy5uY2JpLm5sbS5uaWguZ292L3B1Ym1lZC8yNDU2NjE1MyIsIlByaW1hcnlQb3RlbmN5VXJpIjoiVW5rbm93biIsIlByaW1hcnlUYXJnZXRJZCI6InByb2dyYW1tZWQgYXBvcHRvc2lzIiwiVGFyZ2V0UGhhcm1hY29sb2d5IjoiQWN0aXZhdG9yIiwiUHJpbWFyeVRhcmdldENvbW1lbnQiOiJDMi1jZXJhbWlkZSBleGVydHMgYW50aS10dW1vciBlZmZlY3RzIGJ5IGluZHVjaW5nIHByb2dyYW1tZWQgYXBvcHRvc2lzIGFuZCBuZWNyb3NpcyIsImlkIjoiZjhjMGM5NjU0MCJ9"
],
SMILES: "CCCCCCCCCCCCCC=CC@HC@@HNC(C)=O",

@southalln
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@grishagin
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Visual representation of the relationships in that cluster demonstrating why Rancho's ACETYL CERAMIDE is not stitched to any GSRS node.
image

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