NAMESPACE

# Generated by roxygen2: do not edit by hand

export(StartracDiversity)
export(addVariable)
export(alluvialClones)
export(clonalAbundance)
export(clonalBias)
export(clonalCluster)
export(clonalCompare)
export(clonalDiversity)
export(clonalHomeostasis)
export(clonalLength)
export(clonalNetwork)
export(clonalOccupy)
export(clonalOverlap)
export(clonalOverlay)
export(clonalProportion)
export(clonalQuant)
export(clonalRarefaction)
export(clonalScatter)
export(clonalSizeDistribution)
export(combineBCR)
export(combineExpression)
export(combineTCR)
export(createHTOContigList)
export(exportClones)
export(getCirclize)
export(getContigDoublets)
export(highlightClones)
export(loadContigs)
export(percentAA)
export(percentGenes)
export(percentKmer)
export(percentVJ)
export(positionalEntropy)
export(positionalProperty)
export(subsetClones)
export(vizGenes)
import(ggplot2)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,DataFrame)
importFrom(SeuratObject,Embeddings)
importFrom(SeuratObject,Idents)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,colData)
importFrom(VGAM,dpareto)
importFrom(assertthat,assert_that)
importFrom(assertthat,is.count)
importFrom(assertthat,is.flag)
importFrom(assertthat,is.string)
importFrom(cubature,adaptIntegrate)
importFrom(dplyr,"%>%")
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,coalesce)
importFrom(dplyr,count)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_at)
importFrom(dplyr,mutate_if)
importFrom(dplyr,n)
importFrom(dplyr,sample_n)
importFrom(dplyr,select)
importFrom(dplyr,slice_max)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,summarize_all)
importFrom(dplyr,transmute)
importFrom(dplyr,ungroup)
importFrom(evmix,dgpd)
importFrom(evmix,fgpd)
importFrom(evmix,pgpd)
importFrom(evmix,qgpd)
importFrom(evmix,rgpd)
importFrom(ggalluvial,StatStratum)
importFrom(ggalluvial,geom_alluvium)
importFrom(ggalluvial,geom_flow)
importFrom(ggalluvial,geom_stratum)
importFrom(ggalluvial,to_lodes_form)
importFrom(ggdendro,dendro_data)
importFrom(ggdendro,label)
importFrom(ggdendro,segment)
importFrom(ggplot2,ggplot)
importFrom(ggraph,circle)
importFrom(ggraph,geom_edge_bend)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,ggraph)
importFrom(ggraph,guide_edge_colourbar)
importFrom(ggraph,scale_edge_colour_gradientn)
importFrom(grDevices,hcl.colors)
importFrom(iNEXT,ggiNEXT)
importFrom(iNEXT,iNEXT)
importFrom(igraph,V)
importFrom(igraph,`V<-`)
importFrom(igraph,components)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,graph_from_edgelist)
importFrom(igraph,set_vertex_attr)
importFrom(igraph,union)
importFrom(lifecycle,deprecated)
importFrom(methods,slot)
importFrom(plyr,join)
importFrom(plyr,llply)
importFrom(quantreg,rqss)
importFrom(reshape2,melt)
importFrom(rjson,fromJSON)
importFrom(rlang,"!!")
importFrom(rlang,"%||%")
importFrom(rlang,":=")
importFrom(rlang,ensym)
importFrom(rlang,sym)
importFrom(stats,as.dist)
importFrom(stats,hclust)
importFrom(stats,mad)
importFrom(stats,na.omit)
importFrom(stats,optim)
importFrom(stats,pgamma)
importFrom(stats,qt)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stringdist,stringdist)
importFrom(stringr,str_c)
importFrom(stringr,str_remove_all)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_replace_na)
importFrom(stringr,str_sort)
importFrom(stringr,str_split)
importFrom(stringr,str_to_title)
importFrom(tidygraph,activate)
importFrom(tidygraph,as_tbl_graph)
importFrom(truncdist,qtrunc)
importFrom(truncdist,rtrunc)
importFrom(utils,read.csv)
importFrom(utils,read.delim)
importFrom(utils,write.csv)
useDynLib(scRepertoire, .registration = TRUE)