Can't capitalize custom variables in cloneCall

[chloetu-dfci]

Hi @ncborcherding!

I noticed that using a capitalized variable name in combineExpression's cloneCall doesn't work! ie: combineExpression(input, sc.obj, cloneCall="vdjaa") works, but combineExpression(input, sc.obj, cloneCall="VDJaa") won't.

I think this happens in the function .theCall– the cloneCall variable is converted to lowercase via .convertClonecall before there's a check for the variable in the inputs columns.

Thanks!

[ncborcherding]

Thanks will get it updated in the next commit!

Nick

[ncborcherding]

Got the fix up and running in the dev version, need to do more testing before I get it into the main branch and bioconductor.

Thanks again

Nick