From f87bf5e9b2fb4d560535f47c55ab945204cce01c Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Mon, 29 Apr 2024 15:43:20 +0000
Subject: [PATCH] GitHub Action: convert *.model.csv to *.model.jsonld

---
 HTAN.model.jsonld | 102 ----------------------------------------------
 1 file changed, 102 deletions(-)

diff --git a/HTAN.model.jsonld b/HTAN.model.jsonld
index b1632854..04ba18cc 100644
--- a/HTAN.model.jsonld
+++ b/HTAN.model.jsonld
@@ -44125,57 +44125,6 @@
             "sms:required": "sms:true",
             "sms:validationRules": []
         },
-        {
-            "@id": "bts:PanelName",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "The human-readable panel name. This could be the Gene Panel name or Protein Panel name. In Xenium, this refers to the string entered as the name in panel specification (e.g. Xenium Human Immuno-Oncology Add-on B Gene Expression). In CosMx, this refers to the panel name as it appears in the CosMx catalog (e.g. CosMx Human Universal Cell Characterization Panel (1000-plex))",
-            "rdfs:label": "PanelName",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Panel Name",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
-        {
-            "@id": "bts:TotalNumberofCells",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "The total number of cells analyzed on the flow cell",
-            "rdfs:label": "TotalNumberofCells",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Total Number of Cells",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
-        {
-            "@id": "bts:TotalNumberofTargets",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "Refers to the target of an assay. Can be genes/transcripts or probes",
-            "rdfs:label": "TotalNumberofTargets",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Total Number of Targets",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
         {
             "@id": "bts:NumberofFOVs",
             "@type": "rdfs:Class",
@@ -44193,57 +44142,6 @@
             "sms:required": "sms:true",
             "sms:validationRules": []
         },
-        {
-            "@id": "bts:ExperimentIFChannels",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "A comma-separated list with any number of channels the user deems appropriate(Example: PanCK, CD45, CD3, DAPI)",
-            "rdfs:label": "ExperimentIFChannels",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Experiment IF Channels",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
-        {
-            "@id": "bts:TranscriptsperCell",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "Mean or Median transcript count per cell analyzed on the flow cell or slide",
-            "rdfs:label": "TranscriptsperCell",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Transcripts per Cell",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
-        {
-            "@id": "bts:PercentofTranscriptswithinCells",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "The percentage of transcripts assigned to assayed cells",
-            "rdfs:label": "PercentofTranscriptswithinCells",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Percent of Transcripts within Cells",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
         {
             "@id": "bts:MeanTotalTranscriptsperArea",
             "@type": "rdfs:Class",